Wall clock time and date at job start Tue Mar 31 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48504 * 109.47056 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47078 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.46938 * 150.00478 * 3 2 1 7 7 C 1.38638 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99422 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.35777 * 116.99483 * 185.40363 * 9 7 2 11 11 C 1.38915 * 119.99026 * 186.20327 * 10 9 7 12 12 C 1.38001 * 120.00136 * 180.25206 * 11 10 9 13 13 C 1.38940 * 119.99407 * 359.45111 * 12 11 10 14 14 N 1.39914 * 120.00581 * 180.30261 * 13 12 11 15 15 C 1.34776 * 120.00059 * 33.68700 * 14 13 12 16 16 O 1.21600 * 119.99865 * 5.23205 * 15 14 13 17 17 C 1.47619 * 120.00205 * 185.22612 * 15 14 13 18 18 C 1.39714 * 120.12192 * 0.02562 * 17 15 14 19 19 C 1.37965 * 119.86691 * 179.97438 * 18 17 15 20 20 F 1.35106 * 119.94617 * 180.02562 * 19 18 17 21 21 C 1.38919 * 120.11160 * 359.97438 * 19 18 17 22 22 F 1.35100 * 119.87858 * 179.97438 * 21 19 18 23 23 C 1.38502 * 120.24213 * 359.97438 * 21 19 18 24 24 C 1.38060 * 120.13651 * 359.74571 * 23 21 19 25 25 Cl 1.73604 * 120.05526 * 180.27600 * 24 23 21 26 26 C 1.38940 * 119.99464 * 0.27206 * 13 12 11 27 27 C 1.38001 * 119.99413 * 0.02562 * 26 13 12 28 28 H 0.96998 * 119.99710 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00030 * 0.02562 * 11 10 9 30 30 H 1.07991 * 120.00536 * 179.72443 * 12 11 10 31 31 H 0.97002 * 120.00039 * 213.69932 * 14 13 12 32 32 H 1.08004 * 120.06841 * 359.95073 * 18 17 15 33 33 H 1.08006 * 119.93301 * 179.97438 * 23 21 19 34 34 H 1.07996 * 120.00422 * 180.02562 * 26 13 12 35 35 H 1.08005 * 119.99533 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7000 6 1 3.5474 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3682 -0.0016 10 6 2.0695 -3.5043 0.1119 11 6 1.4549 -4.7439 -0.0115 12 6 2.2007 -5.8989 0.1090 13 6 3.5682 -5.8215 0.3423 14 7 4.3255 -6.9922 0.4581 15 6 3.9986 -8.0808 -0.2662 16 8 3.1060 -8.0176 -1.0895 17 6 4.7241 -9.3497 -0.0600 18 6 5.7498 -9.4253 0.8856 19 6 6.4241 -10.6141 1.0743 20 9 7.4159 -10.6891 1.9887 21 6 6.0843 -11.7344 0.3265 22 9 6.7480 -12.8960 0.5148 23 6 5.0675 -11.6649 -0.6114 24 6 4.3822 -10.4820 -0.8044 25 17 3.1033 -10.3992 -1.9755 26 6 4.1837 -4.5814 0.4599 27 6 3.4365 -3.4268 0.3455 28 1 -0.4849 0.8401 0.0004 29 1 0.3929 -4.8040 -0.1980 30 1 1.7222 -6.8626 0.0175 31 1 5.0858 -7.0204 1.0599 32 1 6.0147 -8.5548 1.4674 33 1 4.8077 -12.5389 -1.1904 34 1 5.2466 -4.5211 0.6408 35 1 3.9151 -2.4628 0.4365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:35 Heat of formation + Delta-G solvation = -84.794152 kcal Electronic energy + Delta-G solvation = -26691.161710 eV Core-core repulsion = 22124.866969 eV Total energy + Delta-G solvation = -4566.294741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 353.042 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.09280 -49.15866 -40.77040 -39.26213 -38.39992 -36.79888 -36.51052 -34.23318 -32.32550 -31.77608 -30.89703 -30.28460 -27.97463 -25.50097 -24.69414 -23.75559 -22.39905 -21.72555 -20.50272 -19.08076 -18.25984 -18.06788 -17.88878 -17.20067 -16.96259 -16.95245 -16.20898 -15.55510 -15.35008 -15.21914 -15.08876 -14.64632 -14.57972 -14.28161 -14.02717 -13.65175 -13.62333 -13.43301 -13.21829 -12.86340 -12.58655 -12.26396 -11.93359 -11.70210 -11.61158 -11.58048 -11.38182 -11.04789 -10.80512 -10.48668 -9.81744 -9.80689 -9.62054 -9.37149 -9.21815 -8.75395 -8.27128 -6.99979 -6.48871 -4.06649 -0.18247 0.16339 1.58084 1.92858 2.13635 2.34539 2.89893 3.07505 3.08703 3.11168 3.15997 3.18403 3.58767 3.77033 3.93452 4.07438 4.34349 4.51604 4.62337 4.86417 4.94071 5.00520 5.06742 5.24046 5.25779 5.48947 5.70749 5.85142 6.03271 6.14160 6.18388 6.72709 6.76358 6.88355 7.07101 7.16174 7.34358 7.52917 7.69384 7.95302 8.12928 8.96343 9.65994 10.68860 Molecular weight = 353.04amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.002076 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.738971 B =13486.821012 C =14493.211752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.148 3.852 11 C -0.177 4.177 12 C -0.064 4.064 13 C 0.032 3.968 14 N -0.650 5.650 15 C 0.544 3.456 16 O -0.492 6.492 17 C -0.102 4.102 18 C -0.084 4.084 19 C 0.068 3.932 20 F -0.119 7.119 21 C 0.104 3.896 22 F -0.117 7.117 23 C -0.128 4.128 24 C 0.027 3.973 25 Cl -0.001 7.001 26 C -0.086 4.086 27 C -0.219 4.219 28 H 0.271 0.729 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.400 0.600 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.111 0.889 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.078 -21.979 1.676 25.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.094 3.906 11 C -0.197 4.197 12 C -0.083 4.083 13 C -0.060 4.060 14 N -0.295 5.295 15 C 0.330 3.670 16 O -0.366 6.366 17 C -0.107 4.107 18 C -0.104 4.104 19 C 0.047 3.953 20 F -0.098 7.098 21 C 0.083 3.917 22 F -0.095 7.095 23 C -0.147 4.147 24 C -0.001 4.001 25 Cl 0.029 6.971 26 C -0.107 4.107 27 C -0.239 4.239 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.235 0.765 32 H 0.177 0.823 33 H 0.182 0.818 34 H 0.129 0.871 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.923 -21.761 0.996 24.833 hybrid contribution 1.288 0.518 0.511 1.479 sum 13.211 -21.243 1.507 25.061 Atomic orbital electron populations 1.70046 1.05970 1.27765 1.45669 1.25307 0.95858 0.98890 0.96502 0.85706 0.78882 0.80045 0.78759 1.19844 1.20244 1.19193 1.21315 0.91777 0.80840 1.52834 0.89046 1.84004 1.34219 1.11452 1.78035 1.19440 0.90393 0.88062 0.92696 1.20122 1.00161 0.89521 1.09906 1.20589 0.91493 0.97980 0.98288 1.17155 0.90691 0.84168 1.13960 1.43072 1.32164 1.11117 1.43136 1.17782 0.84331 0.83018 0.81870 1.90932 1.29792 1.83540 1.32352 1.19743 0.98089 0.94818 0.98022 1.21205 0.94276 0.97196 0.97680 1.17454 0.91272 0.93967 0.92578 1.91591 1.58011 1.96730 1.63435 1.17618 0.94446 0.81730 0.97924 1.91589 1.78696 1.45198 1.93998 1.20925 0.95472 0.99053 0.99276 1.20755 0.92991 0.92730 0.93647 1.98475 1.46255 1.98232 1.54106 1.20464 0.98310 0.90724 1.01152 1.20977 0.94218 0.98379 1.10328 0.91942 0.86034 0.85666 0.76480 0.82256 0.81831 0.87093 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.07 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.39 -10.67 9.44 30.88 0.29 -10.37 16 8 H 0.09 2.28 5.29 -52.49 -0.28 2.00 16 9 O -0.17 -4.86 9.75 0.02 0.00 -4.86 16 10 C 0.15 3.49 6.65 -39.09 -0.26 3.23 16 11 C -0.18 -3.74 9.98 -39.42 -0.39 -4.14 16 12 C -0.06 -1.18 8.64 -39.41 -0.34 -1.52 16 13 C 0.03 0.53 6.27 -83.65 -0.52 0.01 16 14 N -0.65 -8.00 5.28 -10.74 -0.06 -8.06 16 15 C 0.54 7.00 7.49 -12.43 -0.09 6.91 16 16 O -0.49 -7.96 11.66 5.28 0.06 -7.90 16 17 C -0.10 -0.99 5.88 -104.95 -0.62 -1.60 16 18 C -0.08 -0.61 9.51 -39.13 -0.37 -0.98 16 19 C 0.07 0.53 7.30 -39.43 -0.29 0.24 16 20 F -0.12 -1.02 17.17 2.25 0.04 -0.98 16 21 C 0.10 0.80 7.31 -39.23 -0.29 0.51 16 22 F -0.12 -0.97 17.17 2.25 0.04 -0.93 16 23 C -0.13 -0.92 9.79 -39.55 -0.39 -1.30 16 24 C 0.03 0.26 6.35 -39.08 -0.25 0.01 16 25 Cl 0.00 -0.01 26.01 -51.86 -1.35 -1.35 16 26 C -0.09 -1.46 9.96 -39.41 -0.39 -1.85 16 27 C -0.22 -4.51 9.12 -39.42 -0.36 -4.87 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 30 H 0.13 2.23 6.43 -52.49 -0.34 1.89 16 31 H 0.40 3.39 6.86 -40.82 -0.28 3.11 16 32 H 0.16 0.76 6.41 -52.48 -0.34 0.42 16 33 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 2.69 5.71 -52.48 -0.30 2.39 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -31.64 333.99 -6.80 -38.45 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -1.93 Total: 4.44 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -4.37 Total: -14.78 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.70 Total: -32.15 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.06 Total: -12.76 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.08 Total: -1.91 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.35 Total: -1.35 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.64 -6.80 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.349 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds