Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46740 * 2 1 4 4 C 1.50696 * 109.47446 * 119.99774 * 2 1 3 5 5 C 1.38243 * 119.99987 * 119.99969 * 4 2 1 6 6 C 1.38233 * 120.00371 * 180.02562 * 5 4 2 7 7 C 1.38238 * 119.99560 * 359.96130 * 6 5 4 8 8 S 1.76196 * 119.99645 * 180.02562 * 7 6 5 9 9 O 1.42099 * 106.40635 * 336.45913 * 8 7 6 10 10 O 1.42107 * 106.40197 * 203.53594 * 8 7 6 11 11 N 1.65603 * 107.21773 * 89.99854 * 8 7 6 12 12 C 1.47075 * 120.88164 * 269.71954 * 11 8 7 13 13 C 1.53699 * 108.27767 * 128.75679 * 12 11 8 14 14 N 1.46895 * 109.25696 * 54.08278 * 13 12 11 15 15 C 1.46902 * 111.00126 * 172.60858 * 14 13 12 16 16 C 1.50698 * 109.47038 * 59.38259 * 15 14 13 17 17 H 1.08005 * 119.99741 * 5.01542 * 16 15 14 18 18 C 1.37870 * 119.99943 * 185.01923 * 16 15 14 19 19 N 1.31513 * 120.00012 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00003 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47305 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47280 * 119.99979 * 20 18 16 23 23 H 1.48507 * 109.47311 * 240.00042 * 20 18 16 24 24 C 1.46904 * 111.26928 * 296.75813 * 14 13 12 25 25 C 1.47084 * 120.88118 * 90.00419 * 11 8 7 26 26 C 1.38233 * 120.00413 * 0.27157 * 7 6 5 27 27 C 1.38231 * 120.00362 * 299.98410 * 4 2 1 28 28 H 1.08997 * 109.46996 * 299.99192 * 1 2 3 29 29 H 1.08993 * 109.47555 * 60.00293 * 1 2 3 30 30 H 1.09003 * 109.46619 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47472 * 240.00579 * 2 1 3 32 32 H 1.09000 * 109.47221 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47492 * 300.00044 * 3 2 1 34 34 H 1.09005 * 109.47026 * 60.00559 * 3 2 1 35 35 H 1.08006 * 119.99342 * 359.97438 * 5 4 2 36 36 H 1.07998 * 119.99923 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.62941 * 248.52651 * 12 11 8 38 38 H 1.09000 * 109.62952 * 9.10139 * 12 11 8 39 39 H 1.08998 * 109.64409 * 294.07599 * 13 12 11 40 40 H 1.08999 * 109.41751 * 173.94844 * 13 12 11 41 41 H 1.08997 * 109.46893 * 179.38081 * 15 14 13 42 42 H 1.09005 * 109.46667 * 299.38377 * 15 14 13 43 43 H 0.97009 * 119.99894 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.49251 * 303.14940 * 24 14 13 45 45 H 1.09000 * 109.49354 * 183.06402 * 24 14 13 46 46 H 1.08997 * 109.62627 * 350.89021 * 25 11 8 47 47 H 1.08996 * 109.62987 * 111.47803 * 25 11 8 48 48 H 1.07998 * 120.00084 * 179.73130 * 26 7 6 49 49 H 1.07998 * 120.00100 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.8272 -1.8343 1.1036 6 6 3.2877 -2.4862 2.2322 7 6 2.9540 -2.0138 3.4878 8 16 3.5414 -2.8443 4.9263 9 8 3.8195 -4.1811 4.5326 10 8 2.6418 -2.5143 5.9757 11 7 4.9966 -2.1624 5.3262 12 6 6.2551 -2.6970 4.7845 13 6 7.0507 -1.5321 4.1745 14 7 7.2083 -0.4736 5.1807 15 6 8.1101 0.5811 4.6986 16 6 7.5519 1.1796 3.4331 17 1 6.5822 0.8705 3.0717 18 6 8.2790 2.1215 2.7369 19 7 9.4601 2.4974 3.1767 20 14 7.5868 2.8638 1.1687 21 1 6.2514 2.2767 0.8906 22 1 7.4574 4.3341 1.3321 23 1 8.5015 2.5702 0.0362 24 6 5.9080 0.0850 5.5747 25 6 5.0652 -1.0098 6.2374 26 6 2.1553 -0.8927 3.6147 27 6 1.6988 -0.2379 2.4860 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 3.0877 -2.2035 0.1226 36 1 3.9082 -3.3646 2.1330 37 1 6.8320 -3.1584 5.5861 38 1 6.0372 -3.4366 4.0140 39 1 6.5167 -1.1362 3.3107 40 1 8.0331 -1.8877 3.8636 41 1 8.2004 1.3573 5.4585 42 1 9.0926 0.1546 4.4962 43 1 9.9715 3.1604 2.6870 44 1 5.3899 0.4583 4.6915 45 1 6.0617 0.9023 6.2794 46 1 4.0602 -0.6334 6.4278 47 1 5.5300 -1.3121 7.1758 48 1 1.8910 -0.5261 4.5956 49 1 1.0785 0.6406 2.5851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023641406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = -49.720657 kcal Electronic energy + Delta-G solvation = -30634.156587 eV Core-core repulsion = 26687.731915 eV Total energy + Delta-G solvation = -3946.424672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.72304 -38.34232 -37.22542 -35.82522 -35.63155 -34.47236 -32.26499 -31.18633 -30.66645 -30.17686 -27.70172 -27.38447 -25.02157 -23.98892 -23.28041 -22.91029 -22.05506 -20.46342 -19.98901 -18.76702 -18.03046 -17.31763 -16.36139 -16.27628 -15.78543 -15.26165 -14.90276 -14.78023 -14.40585 -14.29360 -14.10989 -14.05253 -13.92925 -13.81382 -13.55256 -13.35476 -13.07029 -12.78387 -12.43260 -12.39643 -12.30145 -12.03477 -11.78947 -11.69901 -11.66200 -11.44085 -11.42052 -11.21053 -11.08179 -11.01758 -10.91661 -10.73468 -10.66079 -10.49261 -10.26423 -9.89937 -9.69248 -9.21869 -9.10287 -8.80464 -8.50989 -7.26353 -6.10232 -4.19441 0.41038 0.79104 1.23977 2.96618 3.18604 3.27352 3.29435 3.44011 3.84027 4.28390 4.32926 4.35858 4.51675 4.78944 4.83602 4.87066 4.91701 4.99708 5.13737 5.18791 5.20151 5.29086 5.37884 5.47081 5.54383 5.58864 5.61189 5.64608 5.70673 5.79969 5.82016 5.83826 5.87836 5.91301 5.99927 6.05444 6.10619 6.13365 6.22017 6.37990 6.48867 6.59565 6.70280 6.75639 6.78198 7.18978 7.45383 7.82372 7.95384 8.19121 8.21333 8.91082 9.47801 10.94764 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.007371 B = 0.005419 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.994790 B = 5166.110448 C = 8115.190823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.148 4.148 4 C -0.022 4.022 5 C -0.139 4.139 6 C -0.014 4.014 7 C -0.679 4.679 8 S 2.692 3.308 9 O -0.961 6.961 10 O -0.962 6.962 11 N -0.992 5.992 12 C 0.124 3.876 13 C 0.051 3.949 14 N -0.538 5.538 15 C 0.187 3.813 16 C -0.548 4.548 17 H 0.056 0.944 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.885 3.115 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.049 3.951 25 C 0.125 3.875 26 C -0.015 4.015 27 C -0.136 4.136 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.262 0.738 44 H 0.041 0.959 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.138 0.862 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.181 -6.907 -2.821 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.205 4.205 4 C -0.023 4.023 5 C -0.158 4.158 6 C -0.033 4.033 7 C -0.765 4.765 8 S 2.783 3.217 9 O -0.952 6.952 10 O -0.952 6.952 11 N -0.832 5.832 12 C -0.001 4.001 13 C -0.079 4.079 14 N -0.262 5.262 15 C 0.062 3.938 16 C -0.588 4.588 17 H 0.074 0.926 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.713 3.287 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.081 4.081 25 C 0.000 4.000 26 C -0.035 4.035 27 C -0.155 4.155 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.156 0.844 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.229 -7.675 -1.993 17.170 hybrid contribution -0.516 1.582 -2.391 2.913 sum -15.745 -6.093 -4.384 17.442 Atomic orbital electron populations 1.21859 0.93895 1.02107 1.02244 1.20278 0.96234 0.96564 0.95203 1.21887 1.01956 0.94466 1.02202 1.20203 0.93455 0.93617 0.94993 1.21171 0.99393 0.96309 0.98919 1.20869 0.94369 0.97204 0.90899 1.31032 1.14725 1.12607 1.18169 1.01916 0.72521 0.73601 0.73654 1.93553 1.84561 1.33077 1.83984 1.93553 1.63153 1.84876 1.53611 1.57649 1.20870 1.45676 1.58986 1.21791 0.83722 0.96061 0.98522 1.22307 0.99586 0.91970 0.94035 1.62408 1.10876 1.13433 1.39453 1.19777 0.91821 0.88372 0.93875 1.21765 1.03964 1.23466 1.09565 0.92553 1.24938 0.94738 0.96482 0.97477 1.69946 1.11719 1.31672 1.39425 0.86651 0.79140 0.79156 0.83753 1.19902 1.20931 1.20933 1.22250 0.91185 0.95270 0.99439 1.21673 1.00500 0.85321 0.92487 1.20865 0.91656 0.91318 0.99628 1.21069 1.01884 1.00665 0.91881 0.92234 0.92072 0.92459 0.90037 0.92018 0.92062 0.92162 0.85243 0.84408 0.90458 0.89909 0.93828 0.90407 0.95322 0.94586 0.92826 0.94071 0.90450 0.89938 0.90462 0.84435 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.01 37.16 0.33 -0.82 16 2 C -0.06 -0.62 3.09 -91.77 -0.28 -0.91 16 3 C -0.15 -1.51 9.01 37.16 0.33 -1.18 16 4 C -0.02 -0.27 4.78 -104.62 -0.50 -0.77 16 5 C -0.14 -1.71 9.67 -39.58 -0.38 -2.09 16 6 C -0.01 -0.19 9.52 -39.58 -0.38 -0.57 16 7 C -0.68 -9.55 5.97 -39.58 -0.24 -9.79 16 8 S 2.69 39.78 5.70 -107.50 -0.61 39.17 16 9 O -0.96 -15.68 16.05 -57.17 -0.92 -16.59 16 10 O -0.96 -15.63 16.06 -57.17 -0.92 -16.55 16 11 N -0.99 -14.70 3.32 -112.97 -0.38 -15.07 16 12 C 0.12 1.84 6.56 -3.37 -0.02 1.81 16 13 C 0.05 0.92 5.17 -3.46 -0.02 0.90 16 14 N -0.54 -10.71 4.83 -235.46 -1.14 -11.85 16 15 C 0.19 4.56 5.11 -4.98 -0.03 4.53 16 16 C -0.55 -14.35 7.75 -34.44 -0.27 -14.62 16 17 H 0.06 1.48 5.88 -52.48 -0.31 1.17 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 20 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.05 0.87 5.24 -3.70 -0.02 0.85 16 25 C 0.13 1.84 6.53 -3.60 -0.02 1.81 16 26 C -0.02 -0.20 9.52 -39.58 -0.38 -0.58 16 27 C -0.14 -1.66 8.71 -39.58 -0.34 -2.00 16 28 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.72 7.88 -51.93 -0.41 0.31 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16 35 H 0.13 1.29 7.95 -52.48 -0.42 0.87 16 36 H 0.14 1.64 7.62 -52.49 -0.40 1.24 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.09 7.21 -51.93 -0.37 0.71 16 39 H 0.04 0.86 6.79 -51.93 -0.35 0.51 16 40 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 41 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.04 0.80 6.92 -51.93 -0.36 0.44 16 45 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 46 H 0.08 1.07 7.22 -51.93 -0.37 0.70 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.14 1.62 7.61 -52.49 -0.40 1.22 16 49 H 0.13 1.29 7.10 -52.49 -0.37 0.92 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -31.75 397.71 -12.44 -44.19 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.89 Total: 1.25 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -2.31 Total: -21.69 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.78 Total: -51.54 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -1.84 Total: -33.14 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 39.78 SS G_CDS: -0.61 Total: 39.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.75 -12.44 -44.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023641406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.528 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds