Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47053 * 2 1 4 4 O 1.21294 * 120.00082 * 359.97438 * 3 2 1 5 5 C 1.46854 * 120.00155 * 180.02562 * 3 2 1 6 6 C 1.40039 * 120.11737 * 180.02562 * 5 3 2 7 7 C 1.37113 * 119.88292 * 180.02562 * 6 5 3 8 8 C 1.39080 * 120.12215 * 0.02562 * 7 6 5 9 9 O 1.35652 * 119.88840 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99939 * 184.98665 * 9 8 7 11 11 C 1.50706 * 109.47216 * 184.57517 * 10 9 8 12 12 O 1.21275 * 119.99776 * 4.98333 * 11 10 9 13 13 N 1.34775 * 120.00034 * 184.98673 * 11 10 9 14 14 C 1.37141 * 120.00092 * 3.74346 * 13 11 10 15 15 H 1.08002 * 119.99857 * 308.22989 * 14 13 11 16 16 C 1.38888 * 119.99893 * 128.22554 * 14 13 11 17 17 N 1.31421 * 119.99782 * 173.07707 * 16 14 13 18 18 Si 1.86800 * 120.00203 * 353.08521 * 16 14 13 19 19 H 1.48497 * 109.47425 * 95.34196 * 18 16 14 20 20 H 1.48498 * 109.47086 * 215.34413 * 18 16 14 21 21 H 1.48508 * 109.46836 * 335.34140 * 18 16 14 22 22 C 1.39794 * 119.99893 * 183.74623 * 13 11 10 23 23 C 1.38956 * 120.07470 * 171.68766 * 22 13 11 24 24 C 1.38087 * 119.91756 * 179.97438 * 23 22 13 25 25 C 1.38303 * 120.07703 * 359.97438 * 24 23 22 26 26 C 1.38304 * 120.16116 * 0.03404 * 25 24 23 27 27 C 1.38086 * 120.07288 * 359.96354 * 26 25 24 28 28 C 1.39080 * 120.22160 * 0.25162 * 8 7 6 29 29 C 1.37119 * 120.11890 * 359.44910 * 28 8 7 30 30 H 1.08994 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47000 * 299.99751 * 1 2 3 32 32 H 1.09000 * 109.47282 * 59.99980 * 1 2 3 33 33 H 1.08998 * 109.47000 * 240.00249 * 2 1 3 34 34 H 1.09000 * 109.47282 * 120.00020 * 2 1 3 35 35 H 1.07996 * 120.05578 * 359.97438 * 6 5 3 36 36 H 1.08006 * 119.93993 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47677 * 64.57633 * 10 9 8 38 38 H 1.09004 * 109.47260 * 304.57419 * 10 9 8 39 39 H 0.97000 * 120.00003 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.04381 * 359.70315 * 23 22 13 41 41 H 1.08000 * 119.95825 * 179.97438 * 24 23 22 42 42 H 1.08010 * 119.91908 * 180.02562 * 25 24 23 43 43 H 1.07996 * 119.96709 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.03543 * 179.97438 * 27 26 25 45 45 H 1.08005 * 119.94024 * 179.72935 * 28 8 7 46 46 H 1.08002 * 120.05974 * 180.27314 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4762 1.6893 -0.0006 6 6 3.9456 3.0086 0.0000 7 6 5.2947 3.2537 -0.0011 8 6 6.1964 2.1949 -0.0032 9 8 7.5301 2.4428 -0.0048 10 6 8.3995 1.3144 -0.1177 11 6 9.8309 1.7682 0.0107 12 8 10.0787 2.9263 0.2718 13 7 10.8355 0.8871 -0.1647 14 6 10.5585 -0.4039 -0.5353 15 1 9.8378 -0.9831 0.0228 16 6 11.2047 -0.9664 -1.6285 17 7 11.0434 -2.2416 -1.9024 18 14 12.3032 0.0894 -2.7092 19 1 13.7134 -0.0461 -2.2638 20 1 12.1849 -0.3565 -4.1207 21 1 11.8846 1.5102 -2.6021 22 6 12.1600 1.2892 0.0311 23 6 13.1822 0.3480 0.0210 24 6 14.4894 0.7488 0.2142 25 6 14.7818 2.0852 0.4172 26 6 13.7669 3.0247 0.4281 27 6 12.4575 2.6310 0.2354 28 6 5.7354 0.8827 -0.0096 29 6 4.3883 0.6267 -0.0024 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2463 3.8316 0.0004 36 1 5.6577 4.2709 -0.0011 37 1 8.2547 0.8395 -1.0880 38 1 8.1725 0.6001 0.6738 39 1 11.4950 -2.6346 -2.6657 40 1 12.9542 -0.6963 -0.1335 41 1 15.2844 0.0177 0.2069 42 1 15.8052 2.3960 0.5677 43 1 13.9987 4.0674 0.5873 44 1 11.6653 3.3652 0.2445 45 1 6.4397 0.0639 -0.0157 46 1 4.0314 -0.3926 -0.0029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023866871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -32.261172 kcal Electronic energy + Delta-G solvation = -29986.709036 eV Core-core repulsion = 25807.878850 eV Total energy + Delta-G solvation = -4178.830185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62646 -40.14059 -39.29585 -37.73615 -36.82576 -35.31008 -33.21175 -32.41015 -31.33710 -30.62737 -30.20477 -29.77415 -27.61100 -25.47549 -25.16355 -23.15690 -22.65277 -21.89401 -21.35941 -19.74354 -19.58343 -18.47556 -18.20507 -16.88575 -16.37452 -16.29585 -16.04464 -15.74760 -15.59365 -15.49147 -15.03925 -14.55863 -14.31532 -14.07107 -13.89250 -13.63971 -13.45003 -13.38423 -13.21016 -12.93907 -12.74811 -12.64725 -12.48977 -12.40684 -12.15134 -12.09559 -11.93403 -11.49461 -11.40795 -11.12170 -10.97825 -10.85977 -10.77457 -10.41655 -10.24658 -9.80089 -9.65262 -9.21978 -9.11195 -8.57614 -8.27357 -8.13963 -7.25402 -6.75193 -4.69303 0.63817 1.27521 1.90496 2.07045 2.33617 2.88846 3.03440 3.13852 3.22403 3.29794 3.71208 3.88576 3.94462 4.18387 4.44094 4.58204 4.70931 4.76156 4.80723 4.87107 4.97929 5.12013 5.19817 5.29390 5.41860 5.45034 5.53088 5.55487 5.58694 5.60817 5.66439 5.67677 5.80696 5.87713 5.93312 6.08771 6.18564 6.21123 6.28153 6.30010 6.41901 6.58087 6.69465 7.04433 7.10231 7.18152 7.23909 7.36239 7.44224 7.56802 7.76241 7.99962 8.55701 8.85968 9.12753 10.27254 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.002325 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.176584 B =12040.078115 C =13132.614991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.172 4.172 3 C 0.402 3.598 4 O -0.465 6.465 5 C -0.227 4.227 6 C -0.020 4.020 7 C -0.169 4.169 8 C 0.177 3.823 9 O -0.289 6.289 10 C 0.057 3.943 11 C 0.499 3.501 12 O -0.539 6.539 13 N -0.401 5.401 14 C -0.381 4.381 15 H 0.111 0.889 16 C 0.087 3.913 17 N -0.850 5.850 18 Si 0.868 3.132 19 H -0.250 1.250 20 H -0.286 1.286 21 H -0.259 1.259 22 C 0.154 3.846 23 C -0.151 4.151 24 C -0.107 4.107 25 C -0.167 4.167 26 C -0.110 4.110 27 C -0.182 4.182 28 C -0.225 4.225 29 C -0.027 4.027 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.282 0.718 40 H 0.140 0.860 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.179 0.821 45 H 0.142 0.858 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 1.669 2.470 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.209 4.209 3 C 0.281 3.719 4 O -0.342 6.342 5 C -0.228 4.228 6 C -0.039 4.039 7 C -0.188 4.188 8 C 0.129 3.871 9 O -0.200 6.200 10 C -0.020 4.020 11 C 0.290 3.710 12 O -0.420 6.420 13 N -0.112 5.112 14 C -0.507 4.507 15 H 0.128 0.872 16 C -0.124 4.124 17 N -0.482 5.482 18 Si 0.693 3.307 19 H -0.175 1.175 20 H -0.213 1.213 21 H -0.182 1.182 22 C 0.058 3.942 23 C -0.171 4.171 24 C -0.126 4.126 25 C -0.186 4.186 26 C -0.129 4.129 27 C -0.202 4.202 28 C -0.244 4.244 29 C -0.045 4.045 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.158 0.842 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.195 0.805 45 H 0.160 0.840 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.786 2.678 2.476 10.444 hybrid contribution 0.934 -0.331 -0.680 1.202 sum -8.852 2.347 1.796 9.332 Atomic orbital electron populations 1.21584 0.93792 1.01690 1.02987 1.21999 0.98219 0.96045 1.04681 1.22335 0.87817 0.91033 0.70721 1.90503 1.58471 1.47793 1.37418 1.20322 0.94776 0.94324 1.13382 1.21030 0.94492 0.96218 0.92123 1.20321 0.91586 0.98728 1.08117 1.19502 0.83396 0.93553 0.90601 1.86074 1.12937 1.34896 1.86075 1.22469 0.87782 0.87001 1.04737 1.20136 0.86672 0.84879 0.79347 1.90272 1.83266 1.18362 1.50149 1.41214 1.01769 1.10855 1.57335 1.19054 1.30356 0.87003 1.14283 0.87153 1.25436 0.95865 0.95402 0.95680 1.69649 1.40249 1.10687 1.27660 0.87006 0.82459 0.81838 0.79417 1.17461 1.21259 1.18250 1.18408 0.85298 0.93162 0.97284 1.21082 0.91809 1.00580 1.03660 1.20834 0.95734 0.95776 1.00217 1.20952 0.98549 0.93591 1.05504 1.21025 0.92853 0.98723 1.00250 1.22774 0.98701 0.96343 1.02366 1.21306 0.97233 0.96128 1.09738 1.21089 0.92092 0.98645 0.92667 0.92120 0.92209 0.92185 0.88305 0.88346 0.84510 0.84445 0.87642 0.88824 0.90764 0.84194 0.86742 0.87236 0.86813 0.80493 0.84009 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 2 C -0.17 -1.32 5.02 -27.88 -0.14 -1.46 16 3 C 0.40 4.43 7.11 -30.82 -0.22 4.21 16 4 O -0.47 -6.43 15.97 5.55 0.09 -6.34 16 5 C -0.23 -2.62 5.87 -105.06 -0.62 -3.24 16 6 C -0.02 -0.25 9.57 -39.32 -0.38 -0.62 16 7 C -0.17 -2.21 9.95 -39.68 -0.39 -2.61 16 8 C 0.18 2.57 6.69 -38.96 -0.26 2.31 16 9 O -0.29 -5.00 9.66 -38.52 -0.37 -5.37 16 10 C 0.06 1.01 4.09 36.01 0.15 1.15 16 11 C 0.50 10.74 7.65 -10.98 -0.08 10.66 16 12 O -0.54 -12.43 12.92 -14.30 -0.18 -12.61 16 13 N -0.40 -9.11 2.26 -58.98 -0.13 -9.24 16 14 C -0.38 -8.90 7.96 -14.94 -0.12 -9.02 16 15 H 0.11 2.60 7.90 -52.49 -0.41 2.19 16 16 C 0.09 2.11 4.29 -17.49 -0.08 2.03 16 17 N -0.85 -21.20 13.96 55.49 0.77 -20.43 16 18 Si 0.87 19.79 24.16 -169.99 -4.11 15.69 16 19 H -0.25 -5.54 6.05 56.52 0.34 -5.20 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.26 -6.27 6.90 56.52 0.39 -5.88 16 22 C 0.15 3.48 4.40 -83.70 -0.37 3.11 16 23 C -0.15 -3.24 5.77 -39.37 -0.23 -3.47 16 24 C -0.11 -1.99 9.77 -39.61 -0.39 -2.38 16 25 C -0.17 -2.89 10.04 -39.53 -0.40 -3.29 16 26 C -0.11 -2.01 10.04 -39.61 -0.40 -2.41 16 27 C -0.18 -3.90 9.03 -39.37 -0.36 -4.25 16 28 C -0.23 -2.82 9.02 -39.68 -0.36 -3.18 16 29 C -0.03 -0.28 9.44 -39.31 -0.37 -0.65 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.14 1.53 7.64 -52.49 -0.40 1.13 16 36 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.11 1.78 7.83 -51.93 -0.41 1.37 16 38 H 0.09 1.45 7.13 -51.93 -0.37 1.08 16 39 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 40 H 0.14 3.15 5.70 -52.49 -0.30 2.85 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.18 3.96 4.58 -56.01 -0.26 3.70 16 45 H 0.14 1.67 6.25 -52.48 -0.33 1.34 16 46 H 0.13 1.01 7.04 -52.49 -0.37 0.64 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -28.74 379.01 -8.73 -37.46 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.85 Total: 9.01 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -4.66 Total: -13.87 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.64 Total: -29.67 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.47 Total: -24.33 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.11 Total: 15.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.74 -8.73 -37.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023866871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.203 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds