Wall clock time and date at job start Tue Mar 31 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86796 * 120.00362 * 2 1 4 4 H 1.48507 * 109.47212 * 240.00579 * 3 2 1 5 5 H 1.48503 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47474 * 120.00448 * 3 2 1 7 7 C 1.38891 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00365 * 163.62189 * 7 2 1 9 9 N 1.37139 * 120.00086 * 343.62134 * 7 2 1 10 10 C 1.34779 * 120.00379 * 164.73826 * 9 7 2 11 11 O 1.21280 * 120.00066 * 174.95690 * 10 9 7 12 12 C 1.50703 * 119.99644 * 354.95697 * 10 9 7 13 13 S 1.81407 * 109.46764 * 179.97438 * 12 10 9 14 14 C 1.76195 * 102.99709 * 180.02562 * 13 12 10 15 15 N 1.31490 * 125.46166 * 359.97438 * 14 13 12 16 16 C 1.33769 * 109.88618 * 180.02562 * 15 14 13 17 17 C 1.37599 * 107.74182 * 0.02562 * 16 15 14 18 18 C 1.41089 * 133.74165 * 179.97438 * 17 16 15 19 19 C 1.35782 * 119.19877 * 179.70005 * 18 17 16 20 20 C 1.41032 * 119.92060 * 0.57411 * 19 18 17 21 21 C 1.34503 * 120.69604 * 359.45411 * 20 19 18 22 22 N 1.35898 * 125.45679 * 180.02562 * 14 13 12 23 23 C 1.39789 * 119.99867 * 344.74434 * 9 7 2 24 24 C 1.38958 * 120.07522 * 281.20650 * 23 9 7 25 25 C 1.38092 * 119.92209 * 179.79028 * 24 23 9 26 26 C 1.38304 * 120.07332 * 0.46232 * 25 24 23 27 27 C 1.38310 * 120.15998 * 359.79375 * 26 25 24 28 28 C 1.38086 * 120.07703 * 359.97212 * 27 26 25 29 29 H 0.97000 * 119.99246 * 5.01269 * 1 2 3 30 30 H 1.09003 * 109.46816 * 59.99950 * 12 10 9 31 31 H 1.08997 * 109.47371 * 299.99743 * 12 10 9 32 32 H 1.08008 * 126.12585 * 180.02562 * 16 15 14 33 33 H 1.08001 * 120.40189 * 0.04522 * 18 17 16 34 34 H 1.08002 * 120.03999 * 180.30905 * 19 18 17 35 35 H 1.08003 * 119.65509 * 179.74008 * 20 19 18 36 36 H 1.08000 * 119.75780 * 180.25923 * 21 20 19 37 37 H 1.08001 * 120.04092 * 0.02562 * 24 23 9 38 38 H 1.07995 * 119.96329 * 180.25344 * 25 24 23 39 39 H 1.08005 * 119.92271 * 179.76600 * 26 25 24 40 40 H 1.07999 * 119.95934 * 179.97438 * 27 26 25 41 41 H 1.07995 * 120.03493 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6963 -1.2126 5 1 1.2834 2.7465 -0.0006 6 1 3.1022 1.6963 1.2124 7 6 2.0087 -1.2028 -0.0005 8 1 3.0558 -1.2218 -0.2643 9 7 1.3647 -2.3666 0.3338 10 6 1.9286 -3.5560 0.0444 11 8 1.4046 -4.5831 0.4205 12 6 3.2102 -3.6097 -0.7467 13 16 3.7113 -5.3389 -0.9693 14 6 5.2021 -5.2029 -1.8986 15 7 5.7528 -4.0773 -2.2969 16 6 6.8745 -4.3357 -2.9784 17 6 7.0396 -5.7013 -3.0119 18 6 8.0147 -6.5525 -3.5733 19 6 7.8887 -7.8958 -3.4202 20 6 6.7858 -8.4232 -2.7170 21 6 5.8580 -7.6084 -2.1839 22 7 5.9665 -6.2448 -2.3195 23 6 0.1234 -2.3191 0.9748 24 6 0.0531 -2.0603 2.3383 25 6 -1.1751 -2.0098 2.9675 26 6 -2.3338 -2.2260 2.2440 27 6 -2.2673 -2.4892 0.8878 28 6 -1.0429 -2.5363 0.2512 29 1 -0.4849 0.8369 -0.0734 30 1 3.9914 -3.0716 -0.2097 31 1 3.0551 -3.1476 -1.7216 32 1 7.5326 -3.6035 -3.4227 33 1 8.8543 -6.1404 -4.1135 34 1 8.6299 -8.5597 -3.8400 35 1 6.6876 -9.4926 -2.6014 36 1 5.0217 -8.0285 -1.6449 37 1 0.9578 -1.8950 2.9045 38 1 -1.2307 -1.8046 4.0263 39 1 -3.2929 -2.1897 2.7393 40 1 -3.1742 -2.6579 0.3260 41 1 -0.9917 -2.7423 -0.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024457069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:42 Heat of formation + Delta-G solvation = 101.673395 kcal Electronic energy + Delta-G solvation = -27152.120522 eV Core-core repulsion = 23318.310703 eV Total energy + Delta-G solvation = -3833.809819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 353.094 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.54073 -39.42836 -37.41266 -37.30483 -34.85055 -33.41368 -31.77552 -30.97365 -30.10064 -29.91467 -28.27873 -27.83656 -25.02492 -23.92459 -22.79780 -21.92825 -21.76115 -21.54767 -19.45904 -18.56399 -17.69841 -16.87745 -16.32010 -16.04628 -15.93120 -15.59435 -15.36933 -14.96144 -14.80708 -14.65444 -14.38724 -13.92145 -13.74826 -13.49419 -13.09462 -12.66857 -12.47208 -12.41785 -12.24905 -11.83812 -11.81086 -11.65641 -11.55321 -11.16810 -11.03011 -10.88922 -10.57543 -10.45092 -10.32539 -10.29044 -10.11742 -9.53580 -9.48435 -8.83821 -8.41192 -8.22003 -7.89705 -7.61986 -6.86875 -6.32738 -4.11136 0.69326 1.12408 1.30443 2.41931 2.48118 2.52754 2.74140 2.95444 3.06187 3.16580 3.17748 3.31354 3.56983 3.97592 4.34103 4.49938 4.57092 4.70114 4.80912 4.86337 4.92280 5.00120 5.17126 5.57170 5.64359 5.72938 5.75394 5.77985 5.86520 5.88321 5.99356 6.04537 6.09930 6.38835 6.40247 6.50985 6.53567 6.76235 6.95696 7.01400 7.24805 7.30908 7.42688 7.54426 7.70761 7.74155 7.92743 8.30943 8.87696 9.19833 9.62054 10.51997 Molecular weight = 353.09amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.002793 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.110102 B =10021.113651 C =11559.081206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.049 3.951 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.359 4.359 8 H 0.106 0.894 9 N -0.399 5.399 10 C 0.475 3.525 11 O -0.585 6.585 12 C -0.096 4.096 13 S 0.033 5.967 14 C 0.153 3.847 15 N -0.452 5.452 16 C -0.005 4.005 17 C -0.007 4.007 18 C -0.069 4.069 19 C -0.131 4.131 20 C -0.139 4.139 21 C 0.062 3.938 22 N -0.359 5.359 23 C 0.237 3.763 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.144 4.144 27 C -0.121 4.121 28 C -0.065 4.065 29 H 0.274 0.726 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.182 0.818 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 -10.134 -4.489 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.160 4.160 3 Si 0.748 3.252 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.485 4.485 8 H 0.123 0.877 9 N -0.115 5.115 10 C 0.263 3.737 11 O -0.470 6.470 12 C -0.247 4.247 13 S 0.263 5.737 14 C -0.210 4.210 15 N -0.169 5.169 16 C -0.161 4.161 17 C -0.117 4.117 18 C -0.089 4.089 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.058 4.058 22 N -0.033 5.033 23 C 0.146 3.854 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.162 4.162 27 C -0.140 4.140 28 C -0.085 4.085 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.199 0.801 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.543 -10.594 -3.606 14.079 hybrid contribution 1.495 1.626 -0.828 2.359 sum 10.038 -8.968 -4.434 14.172 Atomic orbital electron populations 1.69931 1.05815 1.28287 1.43733 1.25280 0.95461 0.99826 0.95427 0.86063 0.79190 0.80679 0.79285 1.19556 1.20723 1.19613 1.19640 0.95527 0.83123 1.50239 0.87660 1.41172 1.16115 1.05109 1.49132 1.19117 0.86543 0.83648 0.84372 1.90614 1.65677 1.33018 1.57735 1.23436 1.00809 0.94547 1.05934 1.85712 1.13945 1.11490 1.62545 1.25587 1.02890 0.83061 1.09445 1.70608 1.08754 1.24092 1.13454 1.22590 0.97398 0.91654 1.04473 1.19728 0.92622 0.94639 1.04758 1.20481 0.97179 0.92552 0.98727 1.21009 0.98562 0.95112 1.00493 1.20780 0.94761 1.00255 1.00281 1.21762 1.01811 0.80115 1.02126 1.42841 1.18360 1.05568 1.36532 1.17064 0.84859 0.93504 0.89963 1.20975 0.97188 1.01786 0.94097 1.20663 0.92502 1.02368 0.98621 1.20753 0.97187 1.03735 0.94521 1.20687 0.96625 1.02149 0.94556 1.20797 0.91593 0.97607 0.98463 0.91446 0.87025 0.86594 0.80135 0.83808 0.84832 0.83534 0.81776 0.87421 0.87533 0.87707 0.87504 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.36 10.34 55.49 0.57 -20.78 16 2 C 0.05 1.19 5.24 -17.49 -0.09 1.10 16 3 Si 0.92 19.24 29.59 -169.99 -5.03 14.21 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.36 -8.83 9.19 -14.94 -0.14 -8.97 16 8 H 0.11 2.45 6.46 -52.49 -0.34 2.11 16 9 N -0.40 -9.90 2.66 -58.98 -0.16 -10.05 16 10 C 0.48 11.28 7.60 -10.98 -0.08 11.20 16 11 O -0.58 -15.01 15.84 5.56 0.09 -14.93 16 12 C -0.10 -1.93 4.58 36.01 0.16 -1.77 16 13 S 0.03 0.60 21.18 -107.50 -2.28 -1.68 16 14 C 0.15 2.63 8.10 -88.76 -0.72 1.91 16 15 N -0.45 -7.96 10.76 -12.83 -0.14 -8.10 16 16 C 0.00 -0.06 11.99 -16.94 -0.20 -0.27 16 17 C -0.01 -0.10 6.81 -83.86 -0.57 -0.67 16 18 C -0.07 -0.67 10.11 -39.38 -0.40 -1.06 16 19 C -0.13 -1.07 10.07 -39.40 -0.40 -1.47 16 20 C -0.14 -1.21 9.97 -39.84 -0.40 -1.60 16 21 C 0.06 0.70 10.89 -16.35 -0.18 0.53 16 22 N -0.36 -5.24 3.00 -60.99 -0.18 -5.43 16 23 C 0.24 5.80 2.29 -83.70 -0.19 5.61 16 24 C -0.12 -2.77 9.95 -39.37 -0.39 -3.16 16 25 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 26 C -0.14 -2.75 10.04 -39.53 -0.40 -3.15 16 27 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 28 C -0.07 -1.53 8.66 -39.37 -0.34 -1.87 16 29 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 30 H 0.11 2.19 7.53 -51.92 -0.39 1.80 16 31 H 0.12 2.34 8.14 -51.93 -0.42 1.92 16 32 H 0.18 1.97 8.06 -52.48 -0.42 1.55 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 38 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 371.27 15.07 5.60 5.60 Total: -1.00 -31.04 371.27 -11.17 -42.21 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.52 Total: 8.32 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -5.13 Total: -9.37 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.10 Total: -44.36 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.93 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.28 Total: -1.68 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.04 -11.17 -42.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024457069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.887 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds