Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86796 * 119.99977 * 2 1 4 4 H 1.48506 * 109.47017 * 239.99780 * 3 2 1 5 5 H 1.48502 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47322 * 119.99651 * 3 2 1 7 7 C 1.38760 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99737 * 180.02562 * 7 2 1 9 9 O 1.34920 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00199 * 180.02562 * 9 7 2 11 11 O 1.21206 * 119.99560 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00072 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.49873 * 59.93581 * 12 10 9 14 14 C 1.53042 * 109.49774 * 180.02562 * 12 10 9 15 15 C 1.53036 * 109.53979 * 181.31993 * 14 12 10 16 16 C 1.53195 * 109.31072 * 298.63513 * 15 14 12 17 17 N 1.46923 * 108.77697 * 54.63620 * 16 15 14 18 18 C 1.34781 * 120.63291 * 126.36699 * 17 16 15 19 19 O 1.21598 * 119.99838 * 185.68337 * 18 17 16 20 20 C 1.47458 * 119.99759 * 5.68987 * 18 17 16 21 21 C 1.38716 * 120.37925 * 54.16915 * 20 18 17 22 22 C 1.38905 * 120.64561 * 180.02562 * 21 20 18 23 23 C 1.36289 * 121.18186 * 359.97438 * 22 21 20 24 24 C 1.40551 * 120.12511 * 359.97438 * 23 22 21 25 25 C 1.40588 * 121.17374 * 180.02562 * 24 23 22 26 26 C 1.36127 * 119.65329 * 180.28033 * 25 24 23 27 27 C 1.39304 * 120.95338 * 359.49455 * 26 25 24 28 28 C 1.36252 * 120.93196 * 0.50712 * 27 26 25 29 29 C 1.40148 * 119.68949 * 359.75672 * 28 27 26 30 30 C 1.46924 * 118.73829 * 306.64266 * 17 16 15 31 31 H 0.96998 * 119.99992 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.46073 * 61.29899 * 14 12 10 33 33 H 1.09006 * 109.45814 * 301.33784 * 14 12 10 34 34 H 1.08994 * 109.50227 * 178.68472 * 15 14 12 35 35 H 1.09008 * 109.50042 * 58.58297 * 15 14 12 36 36 H 1.08996 * 109.58607 * 294.84570 * 16 15 14 37 37 H 1.09010 * 109.70491 * 174.49065 * 16 15 14 38 38 H 1.07997 * 119.67633 * 0.04498 * 21 20 18 39 39 H 1.07999 * 119.40938 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.93634 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.17189 * 0.02562 * 25 24 23 42 42 H 1.08000 * 119.52220 * 179.74772 * 26 25 24 43 43 H 1.07998 * 119.53636 * 180.28345 * 27 26 25 44 44 H 1.07997 * 120.15873 * 179.72845 * 28 27 26 45 45 H 1.08996 * 109.58876 * 173.14670 * 30 17 16 46 46 H 1.09001 * 109.58531 * 293.57114 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6963 -1.2125 5 1 1.2834 2.7464 -0.0006 6 1 3.1020 1.6965 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4966 0.0016 11 8 3.2755 -3.4331 0.0030 12 6 1.3810 -4.8393 0.0023 13 1 0.7575 -4.9304 -0.8872 14 6 2.4345 -5.9494 0.0041 15 6 1.7410 -7.3132 -0.0285 16 6 0.8717 -7.4695 1.2232 17 7 -0.0480 -6.3268 1.3060 18 6 -1.3762 -6.5215 1.4267 19 8 -2.1356 -5.5725 1.3903 20 6 -1.9084 -7.8854 1.6029 21 6 -1.4369 -8.6957 2.6254 22 6 -1.9339 -9.9815 2.7961 23 6 -2.8945 -10.4824 1.9691 24 6 -3.4022 -9.6964 0.9203 25 6 -4.3935 -10.1906 0.0546 26 6 -4.8591 -9.4047 -0.9547 27 6 -4.3750 -8.1113 -1.1372 28 6 -3.4145 -7.6007 -0.3167 29 6 -2.9078 -8.3832 0.7298 30 6 0.5070 -4.9676 1.2486 31 1 -0.4850 0.8400 -0.0004 32 1 3.0417 -5.8722 0.9059 33 1 3.0729 -5.8456 -0.8734 34 1 2.4920 -8.1028 -0.0507 35 1 1.1141 -7.3815 -0.9176 36 1 1.5069 -7.4923 2.1087 37 1 0.2995 -8.3952 1.1601 38 1 -0.6763 -8.3231 3.2954 39 1 -1.5523 -10.5954 3.5985 40 1 -3.2668 -11.4848 2.1205 41 1 -4.7807 -11.1901 0.1870 42 1 -5.6177 -9.7880 -1.6210 43 1 -4.7639 -7.5060 -1.9426 44 1 -3.0450 -6.5979 -0.4723 45 1 -0.3055 -4.2428 1.1997 46 1 1.1119 -4.7822 2.1363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025309796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = -69.788176 kcal Electronic energy + Delta-G solvation = -30892.686581 eV Core-core repulsion = 26712.229103 eV Total energy + Delta-G solvation = -4180.457478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07294 -39.82361 -38.87567 -37.11949 -36.64299 -35.15155 -33.23590 -32.50114 -32.15544 -31.25390 -30.56960 -29.48116 -25.81773 -25.66884 -24.10543 -23.69416 -23.13299 -22.59258 -21.45309 -19.60491 -19.11506 -17.99892 -17.70284 -17.30239 -16.91582 -16.41064 -16.23019 -15.93369 -15.22132 -14.89626 -14.68223 -14.42325 -14.34429 -14.19841 -13.87637 -13.77305 -13.72064 -13.52464 -13.33439 -13.05747 -12.85334 -12.64718 -12.33425 -12.21278 -11.70663 -11.54863 -11.42359 -11.30910 -11.22848 -11.09498 -10.88429 -10.79451 -10.47511 -10.42056 -10.35881 -10.20518 -9.79284 -9.73604 -9.02498 -8.87731 -8.60299 -8.54766 -8.10374 -6.37445 -4.06233 0.12661 0.76239 1.66176 2.56572 2.74316 2.99197 3.15486 3.20491 3.24727 3.53837 3.87201 3.94491 4.22946 4.45649 4.49507 4.55551 4.66121 4.79670 4.85308 4.90649 4.92702 4.97582 5.09412 5.10071 5.13537 5.22644 5.30717 5.35959 5.44104 5.51231 5.63597 5.67339 5.80945 5.82442 5.88115 5.89871 5.96266 6.02904 6.08352 6.16164 6.30644 6.33237 6.37798 6.45348 6.49457 6.54796 6.74166 6.85068 7.38029 7.41416 7.97295 8.14232 8.71646 9.10197 9.87317 10.79764 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.002597 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.142395 B =10777.428467 C =11704.504991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.385 4.385 8 H 0.095 0.905 9 O -0.209 6.209 10 C 0.401 3.599 11 O -0.554 6.554 12 C -0.082 4.082 13 H 0.097 0.903 14 C -0.100 4.100 15 C -0.133 4.133 16 C 0.101 3.899 17 N -0.602 5.602 18 C 0.558 3.442 19 O -0.520 6.520 20 C -0.104 4.104 21 C -0.083 4.083 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.055 4.055 25 C -0.111 4.111 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.098 4.098 29 C -0.019 4.019 30 C 0.123 3.877 31 H 0.270 0.730 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.111 0.889 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.511 -24.711 2.392 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.112 0.888 9 O -0.116 6.116 10 C 0.247 3.753 11 O -0.452 6.452 12 C -0.103 4.103 13 H 0.115 0.885 14 C -0.138 4.138 15 C -0.171 4.171 16 C -0.022 4.022 17 N -0.336 5.336 18 C 0.346 3.654 19 O -0.396 6.396 20 C -0.108 4.108 21 C -0.102 4.102 22 C -0.140 4.140 23 C -0.107 4.107 24 C -0.055 4.055 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.115 4.115 29 C -0.019 4.019 30 C 0.001 3.999 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.154 0.846 45 H 0.129 0.871 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.806 -23.980 2.381 25.041 hybrid contribution 0.477 0.814 -0.024 0.943 sum -6.330 -23.166 2.357 24.131 Atomic orbital electron populations 1.69994 1.05957 1.27826 1.45899 1.25341 0.95786 0.98850 0.96173 0.85762 0.78641 0.79560 0.79300 1.19517 1.20372 1.19489 1.21162 0.92292 0.79884 1.52777 0.88769 1.83893 1.39309 1.13342 1.75028 1.22846 0.86527 0.86863 0.79089 1.90546 1.15576 1.87947 1.51109 1.21017 0.97498 0.91251 1.00494 0.88526 1.21358 0.96759 0.91706 1.03975 1.21945 0.99143 0.98089 0.97967 1.21933 0.92448 0.88994 0.98835 1.48081 1.05641 1.07718 1.72114 1.18215 0.81997 0.88370 0.76837 1.90871 1.56819 1.42575 1.49309 1.19953 0.98397 0.94168 0.98233 1.21298 0.98768 0.93402 0.96703 1.20745 0.97749 0.95482 0.99984 1.21153 0.96237 0.99387 0.93939 1.18022 0.97452 0.93274 0.96714 1.20999 0.96699 0.99943 0.95231 1.20903 0.99845 0.94301 0.97985 1.20961 0.97005 0.95656 0.99551 1.21271 0.96511 1.00064 0.93693 1.17806 0.95326 0.93441 0.95355 1.21530 0.98595 0.82939 0.96826 0.91970 0.90915 0.90676 0.90248 0.91354 0.90970 0.89454 0.85150 0.85271 0.85259 0.85433 0.85831 0.85612 0.84626 0.87051 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.74 13.67 55.48 0.76 -24.99 16 2 C 0.04 1.23 5.49 -17.53 -0.10 1.14 16 3 Si 0.94 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.38 -11.50 9.65 30.93 0.30 -11.20 16 8 H 0.09 2.82 6.86 -52.49 -0.36 2.46 16 9 O -0.21 -6.04 9.68 -20.71 -0.20 -6.24 16 10 C 0.40 9.85 7.21 36.00 0.26 10.11 16 11 O -0.55 -14.68 15.22 -19.05 -0.29 -14.97 16 12 C -0.08 -1.52 2.76 -91.87 -0.25 -1.77 16 13 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 14 C -0.10 -1.48 4.46 -26.69 -0.12 -1.60 16 15 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 16 C 0.10 1.07 5.59 -3.71 -0.02 1.05 16 17 N -0.60 -8.69 2.98 -174.29 -0.52 -9.21 16 18 C 0.56 8.80 6.44 -12.50 -0.08 8.72 16 19 O -0.52 -10.36 15.13 5.28 0.08 -10.28 16 20 C -0.10 -1.34 4.63 -104.63 -0.48 -1.82 16 21 C -0.08 -0.82 7.75 -39.16 -0.30 -1.12 16 22 C -0.12 -0.95 9.92 -40.04 -0.40 -1.35 16 23 C -0.09 -0.72 9.75 -39.41 -0.38 -1.10 16 24 C -0.05 -0.57 5.74 -106.85 -0.61 -1.18 16 25 C -0.11 -0.96 9.77 -39.45 -0.39 -1.35 16 26 C -0.11 -1.00 9.95 -39.94 -0.40 -1.40 16 27 C -0.11 -1.22 9.95 -39.90 -0.40 -1.62 16 28 C -0.10 -1.29 9.21 -39.58 -0.36 -1.65 16 29 C -0.02 -0.24 5.76 -106.56 -0.61 -0.85 16 30 C 0.12 2.17 5.63 -3.93 -0.02 2.14 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 33 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.80 5.38 -51.92 -0.28 0.53 16 38 H 0.13 1.09 7.75 -52.49 -0.41 0.69 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.14 2.04 6.41 -52.49 -0.34 1.71 16 45 H 0.11 2.33 6.99 -51.93 -0.36 1.96 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -36.15 382.18 -9.92 -46.07 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.95 Total: 3.73 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -4.54 Total: -6.47 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.24 Total: -34.20 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.41 Total: -31.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.15 -9.92 -46.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025309796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.714 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds