Wall clock time and date at job start Tue Mar 31 2020 05:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.34784 * 120.00075 * 85.00024 * 4 2 1 6 6 O 1.21555 * 119.99717 * 0.02562 * 5 4 2 7 7 C 1.47842 * 120.00255 * 180.02562 * 5 4 2 8 8 C 1.39574 * 120.14460 * 359.72215 * 7 5 4 9 9 C 1.37961 * 119.85134 * 179.74294 * 8 7 5 10 10 C 1.38355 * 120.14374 * 0.53652 * 9 8 7 11 11 S 1.76204 * 119.85252 * 179.76197 * 10 9 8 12 12 O 1.42090 * 106.40293 * 23.51838 * 11 10 9 13 13 O 1.42106 * 106.40055 * 156.44210 * 11 10 9 14 14 N 1.65603 * 107.21958 * 269.97540 * 11 10 9 15 15 C 1.46502 * 119.99547 * 64.99777 * 14 11 10 16 16 C 1.50705 * 109.46965 * 164.99843 * 15 14 11 17 17 H 1.07998 * 119.99710 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99900 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99947 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00140 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47132 * 89.99439 * 20 18 16 22 22 H 1.48495 * 109.47263 * 209.99469 * 20 18 16 23 23 H 1.48502 * 109.47076 * 329.99973 * 20 18 16 24 24 C 1.38367 * 120.29427 * 359.74299 * 10 9 8 25 25 C 1.37953 * 120.14357 * 359.97117 * 24 10 9 26 26 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 27 27 C 1.53001 * 117.49866 * 8.61877 * 26 2 1 28 28 C 1.53000 * 117.49497 * 299.99468 * 26 2 1 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 33 33 H 1.07997 * 120.07275 * 0.02562 * 8 7 5 34 34 H 1.07997 * 119.92649 * 180.27444 * 9 8 7 35 35 H 0.96990 * 120.00485 * 245.00650 * 14 11 10 36 36 H 1.08997 * 109.47751 * 285.00120 * 15 14 11 37 37 H 1.09009 * 109.47066 * 45.00346 * 15 14 11 38 38 H 0.96996 * 119.99996 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.92670 * 180.02562 * 24 10 9 40 40 H 1.07993 * 120.07366 * 180.02562 * 25 24 10 41 41 H 1.09004 * 115.54851 * 154.33029 * 26 2 1 42 42 H 1.09004 * 117.49834 * 0.02562 * 27 26 2 43 43 H 1.08995 * 117.49577 * 145.02406 * 27 26 2 44 44 H 1.08998 * 117.49694 * 214.97781 * 28 26 2 45 45 H 1.08999 * 117.50120 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3572 6 8 1.8584 1.1611 -2.4117 7 6 2.6393 -0.7155 -3.5644 8 6 2.9772 -2.0684 -3.5038 9 6 3.4309 -2.7142 -4.6353 10 6 3.5618 -2.0211 -5.8255 11 16 4.1480 -2.8521 -7.2645 12 8 3.8727 -4.2325 -7.0708 13 8 3.6674 -2.1125 -8.3787 14 7 5.7971 -2.7017 -7.2799 15 6 6.5997 -3.3307 -6.2280 16 6 8.0450 -3.3682 -6.6535 17 1 8.3364 -2.9635 -7.6114 18 6 8.9952 -3.9181 -5.8194 19 7 10.2564 -3.9503 -6.1905 20 14 8.4911 -4.6173 -4.1622 21 1 8.1514 -6.0550 -4.3141 22 1 9.6142 -4.4729 -3.2016 23 1 7.3066 -3.8800 -3.6534 24 6 3.2342 -0.6784 -5.8910 25 6 2.7737 -0.0221 -4.7683 26 6 2.0400 -0.7213 1.2493 27 6 1.0104 -1.4541 2.1117 28 6 1.6358 -0.1495 2.6096 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 2.8792 -2.6095 -2.5743 34 1 3.6884 -3.7621 -4.5909 35 1 6.2316 -2.1972 -7.9851 36 1 6.5070 -2.7553 -5.3069 37 1 6.2444 -4.3472 -6.0586 38 1 10.9248 -4.3375 -5.6039 39 1 3.3383 -0.1432 -6.8233 40 1 2.5180 1.0258 -4.8208 41 1 3.0324 -1.1641 1.1642 42 1 -0.0303 -1.4227 1.7889 43 1 1.3253 -2.3794 2.5942 44 1 2.3620 -0.2165 3.4196 45 1 1.0062 0.7403 2.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025595599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:35 Heat of formation + Delta-G solvation = -57.671476 kcal Electronic energy + Delta-G solvation = -28335.298921 eV Core-core repulsion = 24252.696381 eV Total energy + Delta-G solvation = -4082.602540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67867 -39.05882 -38.02858 -36.94218 -35.55356 -34.85575 -34.75387 -32.28240 -32.05507 -31.27505 -29.94529 -27.46396 -25.76279 -24.15788 -22.96678 -22.88158 -22.10369 -20.88178 -20.37592 -19.33953 -18.43315 -17.81533 -17.25399 -17.00389 -16.21222 -16.04219 -15.78638 -15.55081 -15.10804 -15.03946 -14.67391 -14.40211 -14.31469 -13.79222 -13.70913 -13.53961 -13.21309 -13.08131 -12.83432 -12.55571 -12.52128 -12.40777 -12.10839 -11.85223 -11.81746 -11.73622 -11.50592 -11.41115 -11.03988 -10.99069 -10.89600 -10.68247 -10.60831 -10.20826 -10.06349 -9.65820 -9.59885 -9.41886 -9.26141 -8.98018 -8.59846 -6.25208 -4.27038 0.17411 0.75999 1.10349 2.40610 2.63588 3.17399 3.23038 3.24208 3.33112 3.35743 3.57224 4.04020 4.11603 4.24702 4.27554 4.35267 4.41218 4.50244 4.61241 4.64047 4.75294 4.86855 4.99897 5.05720 5.08066 5.17978 5.27214 5.30643 5.36619 5.37826 5.51338 5.62350 5.64267 5.71611 5.80945 5.82402 5.91198 5.95713 6.07255 6.08909 6.54315 6.74496 6.82378 7.08927 7.31085 7.73129 7.81423 8.30207 8.76575 9.32182 10.87231 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.010098 B = 0.002907 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.057600 B = 9629.477442 C =11558.317502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.173 3.827 3 H 0.094 0.906 4 N -0.719 5.719 5 C 0.560 3.440 6 O -0.530 6.530 7 C -0.090 4.090 8 C -0.110 4.110 9 C -0.025 4.025 10 C -0.647 4.647 11 S 2.689 3.311 12 O -0.958 6.958 13 O -0.969 6.969 14 N -1.093 6.093 15 C 0.216 3.784 16 C -0.532 4.532 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.891 5.891 20 Si 0.872 3.128 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.024 4.024 25 C -0.083 4.083 26 C -0.171 4.171 27 C -0.182 4.182 28 C -0.168 4.168 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.402 0.598 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.418 0.582 36 H 0.020 0.980 37 H 0.032 0.968 38 H 0.268 0.732 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.820 5.953 14.780 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.112 0.888 4 N -0.372 5.372 5 C 0.347 3.653 6 O -0.408 6.408 7 C -0.093 4.093 8 C -0.129 4.129 9 C -0.044 4.044 10 C -0.732 4.732 11 S 2.776 3.224 12 O -0.948 6.948 13 O -0.960 6.960 14 N -0.856 5.856 15 C 0.092 3.908 16 C -0.571 4.571 17 H 0.101 0.899 18 C -0.129 4.129 19 N -0.528 5.528 20 Si 0.698 3.302 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.188 1.188 24 C -0.044 4.044 25 C -0.102 4.102 26 C -0.189 4.189 27 C -0.218 4.218 28 C -0.206 4.206 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.238 0.762 33 H 0.151 0.849 34 H 0.166 0.834 35 H 0.253 0.747 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.453 6.226 14.384 24.982 hybrid contribution 0.409 -0.297 1.409 1.496 sum -19.044 5.929 15.793 25.441 Atomic orbital electron populations 1.22304 0.95035 1.02426 1.02734 1.20429 0.93900 0.96895 0.81903 0.88811 1.45976 1.67449 1.14318 1.09417 1.18299 0.77434 0.86465 0.83075 1.90780 1.49707 1.15350 1.84917 1.20178 1.00550 0.94371 0.94225 1.21359 0.99109 0.93484 0.98973 1.20955 0.92487 1.00293 0.90651 1.31536 1.14684 1.06830 1.20158 1.02021 0.73138 0.74060 0.73222 1.93573 1.84349 1.30782 1.86092 1.93557 1.79971 1.73509 1.48919 1.55228 1.23147 1.68371 1.38810 1.19489 0.93155 0.92515 0.85681 1.21028 0.88733 1.41331 1.06002 0.89858 1.24859 0.94742 0.95115 0.98170 1.69869 1.00894 1.44586 1.37444 0.86911 0.78824 0.80408 0.84053 1.19520 1.20798 1.18779 1.20961 0.92244 0.92049 0.99104 1.21362 0.97060 1.00764 0.91050 1.22555 1.00185 1.04758 0.91434 1.23209 0.98976 0.96264 1.03380 1.22956 1.03688 0.97785 0.96139 0.91792 0.91398 0.91843 0.76166 0.84901 0.83385 0.74678 0.96271 0.94980 0.92217 0.83345 0.83770 0.87037 0.87817 0.88659 0.88413 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 8.08 37.16 0.30 -0.88 16 2 C 0.17 1.37 2.97 -67.93 -0.20 1.17 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 4 N -0.72 -6.31 5.03 -54.75 -0.28 -6.58 16 5 C 0.56 6.68 7.74 -12.33 -0.10 6.59 16 6 O -0.53 -7.85 16.01 5.32 0.09 -7.77 16 7 C -0.09 -1.10 5.87 -104.97 -0.62 -1.71 16 8 C -0.11 -1.23 9.54 -39.18 -0.37 -1.60 16 9 C -0.02 -0.33 9.50 -39.64 -0.38 -0.71 16 10 C -0.65 -9.43 5.95 -39.49 -0.24 -9.67 16 11 S 2.69 44.96 5.73 -107.50 -0.62 44.34 16 12 O -0.96 -18.28 16.74 -57.17 -0.96 -19.24 16 13 O -0.97 -17.20 17.27 -57.17 -0.99 -18.18 16 14 N -1.09 -20.19 5.99 -11.65 -0.07 -20.26 16 15 C 0.22 4.73 5.04 -5.19 -0.03 4.71 16 16 C -0.53 -14.00 9.83 -34.44 -0.34 -14.34 16 17 H 0.08 2.33 7.90 -52.49 -0.41 1.92 16 18 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 20 Si 0.87 19.81 27.47 -169.99 -4.67 15.14 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 24 C -0.02 -0.32 9.50 -39.64 -0.38 -0.70 16 25 C -0.08 -1.04 9.60 -39.19 -0.38 -1.42 16 26 C -0.17 -1.06 5.87 -90.62 -0.53 -1.60 16 27 C -0.18 -0.94 9.57 -26.73 -0.26 -1.20 16 28 C -0.17 -0.90 9.90 -26.73 -0.26 -1.17 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.39 7.07 -51.93 -0.37 0.02 16 31 H 0.06 0.40 6.97 -51.93 -0.36 0.04 16 32 H 0.40 2.67 6.64 -40.82 -0.27 2.39 16 33 H 0.13 1.01 6.41 -52.49 -0.34 0.67 16 34 H 0.15 1.85 7.60 -52.49 -0.40 1.45 16 35 H 0.42 7.22 8.53 -34.47 -0.29 6.92 16 36 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 37 H 0.03 0.71 7.18 -51.92 -0.37 0.33 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.15 1.72 7.60 -52.49 -0.40 1.32 16 40 H 0.14 1.66 7.65 -52.49 -0.40 1.26 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.50 5.85 -51.93 -0.30 0.20 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.49 7.61 -51.93 -0.39 0.09 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -33.85 386.05 -10.71 -44.56 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.94 Total: 7.80 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.87 Total: -20.60 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.43 Total: -51.88 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -1.86 Total: -45.19 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Atomic # 16 Polarization: 44.96 SS G_CDS: -0.62 Total: 44.34 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.85 -10.71 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025595599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.112 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds