Wall clock time and date at job start Tue Mar 31 2020 05:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38136 * 120.02705 * 2 1 4 4 C 1.38249 * 120.08495 * 180.27575 * 3 2 1 5 5 C 1.38427 * 120.13695 * 359.72149 * 4 3 2 6 6 Cl 1.73599 * 119.97387 * 179.97438 * 5 4 3 7 7 C 1.38195 * 120.04739 * 0.02562 * 5 4 3 8 8 C 1.38902 * 120.02508 * 179.72523 * 2 1 3 9 9 N 1.39774 * 120.06350 * 0.02562 * 8 2 1 10 10 C 1.38174 * 119.99860 * 156.83269 * 9 8 2 11 11 N 1.32420 * 119.46182 * 353.86323 * 10 9 8 12 12 C 1.32364 * 122.53069 * 179.74654 * 11 10 9 13 13 N 1.38078 * 119.46771 * 180.25033 * 12 11 10 14 14 C 1.40574 * 121.06754 * 0.52963 * 12 11 10 15 15 C 1.43202 * 120.61112 * 179.76499 * 14 12 11 16 16 N 8.78452 * 110.85202 * 196.35404 * 2 1 3 17 17 C 1.42271 * 118.77790 * 359.74453 * 14 12 11 18 18 C 1.40450 * 121.11539 * 180.02562 * 17 14 12 19 19 H 1.08009 * 120.00005 * 135.33852 * 18 17 14 20 20 C 1.40518 * 120.00352 * 315.33703 * 18 17 14 21 21 N 1.30495 * 119.99635 * 340.26619 * 20 18 17 22 22 Si 1.86799 * 120.00351 * 160.26266 * 20 18 17 23 23 H 1.48496 * 109.47052 * 90.00162 * 22 20 18 24 24 H 1.48495 * 109.47021 * 210.00329 * 22 20 18 25 25 H 1.48494 * 109.46955 * 329.99865 * 22 20 18 26 26 C 1.40516 * 119.46366 * 174.13252 * 10 9 8 27 27 C 1.43199 * 120.61063 * 359.96162 * 26 10 9 28 28 N 5.52351 * 64.46815 * 171.29510 * 2 1 3 29 29 H 1.08999 * 109.47039 * 270.27698 * 1 2 3 30 30 H 1.09004 * 109.46741 * 30.27500 * 1 2 3 31 31 H 1.08997 * 109.47022 * 150.27262 * 1 2 3 32 32 H 1.07995 * 119.95715 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.93042 * 179.70352 * 4 3 2 34 34 H 1.08000 * 120.04192 * 180.02562 * 7 5 4 35 35 H 0.97000 * 120.00455 * 337.10453 * 9 8 2 36 36 H 0.97001 * 120.00192 * 180.26832 * 13 12 11 37 37 H 0.97005 * 119.99570 * 0.27917 * 13 12 11 38 38 H 0.96999 * 119.99949 * 185.08449 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5807 1.1974 -0.0058 5 6 4.2769 0.0009 -0.0057 6 17 6.0129 0.0076 -0.0136 7 6 3.5911 -1.1988 -0.0005 8 6 2.2020 -1.2026 0.0058 9 7 1.5050 -2.4142 0.0110 10 6 2.1143 -3.5637 -0.4543 11 7 3.3114 -3.4852 -1.0149 12 6 3.9523 -4.5473 -1.4765 13 7 5.2012 -4.3932 -2.0450 14 6 3.3796 -5.8290 -1.4027 15 6 4.0795 -6.9708 -1.9098 16 7 4.6339 -7.8770 -2.3115 17 6 2.0919 -5.9709 -0.8146 18 6 1.4740 -7.2283 -0.7151 19 1 0.9886 -7.5202 0.2045 20 6 1.4874 -8.1065 -1.8119 21 7 1.7124 -7.6475 -3.0126 22 14 1.1832 -9.9311 -1.5514 23 1 -0.2709 -10.2112 -1.6619 24 1 1.9167 -10.7075 -2.5830 25 1 1.6620 -10.3250 -0.2020 26 6 1.4511 -4.7963 -0.3300 27 6 0.1545 -4.8691 0.2735 28 7 -0.8737 -4.9267 0.7543 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8876 -0.5181 31 1 -0.3633 -0.8924 -0.5096 32 1 1.6580 2.1311 0.0004 33 1 4.1186 2.1338 -0.0106 34 1 4.1343 -2.1322 0.0000 35 1 0.5923 -2.4472 0.3376 36 1 5.6761 -5.1658 -2.3893 37 1 5.6037 -3.5123 -2.0998 38 1 1.6489 -8.2399 -3.7780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025637544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:57 Heat of formation + Delta-G solvation = 106.124950 kcal Electronic energy + Delta-G solvation = -27544.679737 eV Core-core repulsion = 23605.478902 eV Total energy + Delta-G solvation = -3939.200835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 353.074 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.28187 -38.98646 -36.73764 -36.14957 -35.70111 -34.91453 -34.36360 -33.08196 -32.38378 -31.10598 -29.97411 -28.11847 -26.82680 -26.40609 -23.73900 -22.37323 -21.65817 -21.03502 -19.20859 -18.37431 -17.89457 -17.09467 -16.35099 -15.84170 -15.61007 -15.33651 -15.16867 -14.52474 -14.34946 -14.16043 -13.86325 -13.81985 -13.38496 -13.02797 -12.79893 -12.61614 -12.55104 -12.37773 -12.22338 -11.94735 -11.85941 -11.82150 -11.67133 -11.47906 -11.32719 -11.21746 -11.16597 -10.84496 -10.81170 -10.76805 -10.50687 -9.67531 -9.40273 -8.82975 -8.42520 -8.34205 -7.81833 -7.27515 -6.79165 -5.14940 1.19597 1.41896 1.96649 2.27445 2.34564 2.91621 2.97332 2.98669 3.23397 3.61469 3.64874 3.69679 3.85499 3.96286 4.08138 4.31199 4.49146 4.82733 4.98029 5.12604 5.15385 5.22069 5.29548 5.35095 5.46712 5.56129 5.61864 5.72369 5.91667 5.98233 6.15797 6.29911 6.40751 6.51377 6.53564 6.64835 6.83067 6.91823 7.13241 7.35134 7.53138 7.71248 7.93156 8.00293 8.12588 8.27020 8.56975 8.81823 8.98158 9.67589 Molecular weight = 353.07amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.003632 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.988650 B = 7706.944019 C = 9452.675312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.018 4.018 6 Cl -0.080 7.080 7 C -0.120 4.120 8 C 0.194 3.806 9 N -0.653 5.653 10 C 0.495 3.505 11 N -0.635 5.635 12 C 0.505 3.495 13 N -0.846 5.846 14 C -0.245 4.245 15 C 0.325 3.675 16 N -0.505 5.505 17 C 0.256 3.744 18 C -0.448 4.448 19 H 0.100 0.900 20 C 0.087 3.913 21 N -0.746 5.746 22 Si 0.906 3.094 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.253 1.253 26 C -0.263 4.263 27 C 0.303 3.697 28 N -0.494 5.494 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.175 0.825 35 H 0.417 0.583 36 H 0.406 0.594 37 H 0.400 0.600 38 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 13.817 2.655 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C -0.107 4.107 4 C -0.166 4.166 5 C -0.046 4.046 6 Cl -0.051 7.051 7 C -0.142 4.142 8 C 0.095 3.905 9 N -0.276 5.276 10 C 0.259 3.741 11 N -0.366 5.366 12 C 0.267 3.733 13 N -0.386 5.386 14 C -0.260 4.260 15 C 0.014 3.986 16 N -0.185 5.185 17 C 0.245 3.755 18 C -0.476 4.476 19 H 0.118 0.882 20 C -0.140 4.140 21 N -0.367 5.367 22 Si 0.729 3.271 23 H -0.188 1.188 24 H -0.193 1.193 25 H -0.176 1.176 26 C -0.278 4.278 27 C -0.008 4.008 28 N -0.174 5.174 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.192 0.808 35 H 0.256 0.744 36 H 0.236 0.764 37 H 0.229 0.771 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.202 13.038 2.421 13.642 hybrid contribution -0.337 -1.173 -0.249 1.246 sum 2.865 11.864 2.172 12.397 Atomic orbital electron populations 1.20710 0.91039 1.03085 1.02270 1.19647 0.96137 0.91823 1.05970 1.20610 0.93083 0.96908 1.00084 1.20838 0.94087 0.96624 1.05027 1.20687 0.83973 0.94748 1.05145 1.98345 1.10786 1.98963 1.97028 1.21657 0.92837 0.99043 1.00615 1.17418 0.90872 0.84715 0.97481 1.42021 1.16347 1.04301 1.64918 1.17421 0.87516 0.83404 0.85754 1.66363 1.11341 1.29958 1.28910 1.17524 0.84340 0.87161 0.84299 1.42101 1.17392 1.12631 1.66526 1.16047 0.97501 0.86937 1.25510 1.24918 0.90619 0.92228 0.90834 1.80982 1.13490 1.10052 1.14004 1.16771 0.86844 0.90567 0.81334 1.19570 1.30392 0.97599 1.00077 0.88237 1.25984 0.92084 1.01640 0.94277 1.69517 1.28599 1.38981 0.99628 0.86261 0.79496 0.80760 0.80576 1.18828 1.19316 1.17638 1.16079 0.92756 0.92485 1.26499 1.25282 0.92029 0.92303 0.91197 1.81114 1.12619 1.08720 1.14960 0.91232 0.91115 0.91655 0.85448 0.85693 0.80812 0.74411 0.76443 0.77148 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.45 36.01 0.34 -0.81 16 2 C -0.13 -1.60 5.90 -104.41 -0.62 -2.22 16 3 C -0.09 -0.94 9.70 -39.61 -0.38 -1.33 16 4 C -0.15 -1.64 9.83 -39.51 -0.39 -2.03 16 5 C -0.02 -0.24 6.32 -39.53 -0.25 -0.48 16 6 Cl -0.08 -0.95 28.95 -51.86 -1.50 -2.45 16 7 C -0.12 -1.74 8.44 -39.35 -0.33 -2.07 16 8 C 0.19 2.78 6.45 -83.74 -0.54 2.24 16 9 N -0.65 -10.07 5.05 -9.85 -0.05 -10.12 16 10 C 0.49 8.91 7.30 -155.28 -1.13 7.78 16 11 N -0.64 -11.16 6.34 -11.30 -0.07 -11.23 16 12 C 0.50 9.12 7.74 -155.40 -1.20 7.92 16 13 N -0.85 -12.26 8.96 31.23 0.28 -11.98 16 14 C -0.24 -5.11 5.52 -105.54 -0.58 -5.69 16 15 C 0.33 7.10 10.52 -22.48 -0.24 6.86 16 16 N -0.51 -11.44 18.54 41.83 0.78 -10.66 16 17 C 0.26 5.63 5.32 -105.95 -0.56 5.07 16 18 C -0.45 -10.30 7.90 -37.89 -0.30 -10.60 16 19 H 0.10 2.26 7.86 -52.48 -0.41 1.85 16 20 C 0.09 1.97 4.14 -17.26 -0.07 1.90 16 21 N -0.75 -17.40 11.38 55.58 0.63 -16.77 16 22 Si 0.91 18.08 29.61 -169.99 -5.03 13.05 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.25 -5.03 7.11 56.52 0.40 -4.63 16 26 C -0.26 -5.29 5.84 -105.55 -0.62 -5.90 16 27 C 0.30 6.15 13.23 -22.45 -0.30 5.85 16 28 N -0.49 -10.32 18.54 41.86 0.78 -9.55 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.06 0.71 6.95 -51.93 -0.36 0.35 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.18 2.74 5.42 -52.49 -0.28 2.46 16 35 H 0.42 6.07 6.13 -40.82 -0.25 5.82 16 36 H 0.41 5.74 7.62 -40.82 -0.31 5.43 16 37 H 0.40 4.91 8.95 -40.82 -0.37 4.55 16 38 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -25.14 355.83 -8.81 -33.95 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -2.81 Total: 13.93 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: -7.17 Total: 6.48 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: 2.34 Total: -70.32 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -25.14 -8.81 -33.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025637544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.074 kcal (2) G-P(sol) polarization free energy of solvation -25.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds