Wall clock time and date at job start Tue Mar 31 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86797 * 120.00076 * 2 1 4 4 H 1.48495 * 109.47058 * 274.72976 * 3 2 1 5 5 H 1.48507 * 109.46768 * 34.72498 * 3 2 1 6 6 H 1.48500 * 109.47171 * 154.72254 * 3 2 1 7 7 C 1.39890 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99507 * 160.80655 * 7 2 1 9 9 C 1.41213 * 120.00528 * 340.81123 * 7 2 1 10 10 C 1.40827 * 120.18457 * 156.76050 * 9 7 2 11 11 C 1.36432 * 119.81773 * 180.02562 * 10 9 7 12 12 C 1.39316 * 120.18213 * 359.97438 * 11 10 9 13 13 O 1.35670 * 119.81838 * 179.97438 * 12 11 10 14 14 C 1.42898 * 117.00231 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47386 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47347 * 54.99864 * 15 14 13 17 17 O 1.42896 * 109.47148 * 294.99780 * 15 14 13 18 18 C 1.53008 * 109.47314 * 174.99866 * 15 14 13 19 19 N 1.46895 * 109.46906 * 179.23759 * 18 15 14 20 20 C 1.47167 * 111.00039 * 68.63785 * 19 18 15 21 21 C 1.52893 * 108.50192 * 52.11501 * 20 19 18 22 22 C 1.50715 * 109.96603 * 50.35813 * 21 20 19 23 23 C 1.38677 * 118.49279 * 163.32036 * 22 21 20 24 24 C 1.38029 * 120.35295 * 179.75608 * 23 22 21 25 25 C 1.38260 * 119.82741 * 0.03502 * 24 23 22 26 26 C 1.38016 * 119.86722 * 0.32871 * 25 24 23 27 27 C 1.37836 * 121.65796 * 343.22730 * 22 21 20 28 28 C 1.46632 * 110.99654 * 191.60523 * 19 18 15 29 29 C 1.39313 * 120.36214 * 0.26207 * 12 11 10 30 30 C 1.36439 * 120.18426 * 359.47557 * 29 12 11 31 31 H 0.96992 * 120.00262 * 359.97438 * 1 2 3 32 32 H 1.08007 * 120.09140 * 0.02562 * 10 9 7 33 33 H 1.08001 * 119.91223 * 179.97438 * 11 10 9 34 34 H 1.08997 * 109.47044 * 59.99982 * 14 13 12 35 35 H 1.09008 * 109.47100 * 300.00476 * 14 13 12 36 36 H 0.96698 * 114.00057 * 300.00342 * 17 15 14 37 37 H 1.08993 * 109.46839 * 59.23962 * 18 15 14 38 38 H 1.08997 * 109.46916 * 299.24075 * 18 15 14 39 39 H 1.08995 * 109.63166 * 171.81756 * 20 19 18 40 40 H 1.09001 * 109.62873 * 292.40602 * 20 19 18 41 41 H 1.09001 * 109.39416 * 170.51834 * 21 20 19 42 42 H 1.09005 * 109.38876 * 290.31261 * 21 20 19 43 43 H 1.08004 * 119.82319 * 359.77880 * 23 22 21 44 44 H 1.07998 * 120.08932 * 180.02562 * 24 23 22 45 45 H 1.08007 * 120.06898 * 180.02562 * 25 24 23 46 46 H 1.07996 * 119.81376 * 179.73384 * 26 25 24 47 47 H 1.09002 * 109.30304 * 168.80330 * 28 19 18 48 48 H 1.09003 * 109.13273 * 49.32742 * 28 19 18 49 49 H 1.07998 * 119.90488 * 179.71687 * 29 12 11 50 50 H 1.07999 * 120.08945 * 180.25699 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3904 2.1041 -1.3953 5 1 1.4937 2.6217 0.7976 6 1 3.5868 1.4134 0.5978 7 6 2.0083 -1.2115 -0.0005 8 1 3.0433 -1.2373 -0.3081 9 6 1.3611 -2.4007 0.4009 10 6 1.8417 -3.6504 -0.0357 11 6 1.2104 -4.7946 0.3563 12 6 0.0936 -4.7291 1.1865 13 8 -0.5289 -5.8715 1.5713 14 6 -1.6685 -5.7344 2.4224 15 6 -2.2314 -7.1193 2.7482 16 1 -1.4436 -7.7409 3.1736 17 8 -2.7238 -7.7267 1.5521 18 6 -3.3732 -6.9813 3.7574 19 7 -3.9256 -8.3092 4.0562 20 6 -2.9602 -9.1244 4.8109 21 6 -2.4892 -8.3204 6.0230 22 6 -3.6779 -7.7793 6.7752 23 6 -3.4907 -7.3309 8.0740 24 6 -4.5517 -6.8232 8.7964 25 6 -5.8080 -6.7621 8.2223 26 6 -5.9969 -7.2151 6.9324 27 6 -4.9306 -7.7210 6.2031 28 6 -5.1857 -8.1993 4.7979 29 6 -0.3912 -3.4967 1.6188 30 6 0.2318 -2.3434 1.2403 31 1 -0.4850 0.8399 0.0004 32 1 2.7077 -3.7029 -0.6790 33 1 1.5775 -5.7538 0.0221 34 1 -2.4307 -5.1419 1.9164 35 1 -1.3744 -5.2356 3.3460 36 1 -3.4289 -7.2268 1.1186 37 1 -4.1550 -6.3487 3.3372 38 1 -2.9947 -6.5303 4.6747 39 1 -3.4401 -10.0440 5.1454 40 1 -2.1072 -9.3632 4.1757 41 1 -1.9074 -8.9655 6.6814 42 1 -1.8671 -7.4906 5.6874 43 1 -2.5094 -7.3787 8.5226 44 1 -4.4010 -6.4747 9.8074 45 1 -6.6408 -6.3652 8.7838 46 1 -6.9795 -7.1710 6.4863 47 1 -5.6701 -9.1752 4.8319 48 1 -5.8390 -7.4905 4.2891 49 1 -1.2603 -3.4543 2.2585 50 1 -0.1429 -1.3890 1.5797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025865760.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:12 Heat of formation + Delta-G solvation = -37.579580 kcal Electronic energy + Delta-G solvation = -30279.793416 eV Core-core repulsion = 26236.565702 eV Total energy + Delta-G solvation = -4043.227714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.86546 -39.00890 -38.02044 -36.71094 -35.79539 -33.34542 -33.05823 -31.83046 -30.33711 -29.61599 -29.50440 -28.98818 -26.51911 -24.72322 -24.35590 -23.35680 -22.49009 -21.82531 -20.90235 -20.35056 -19.50089 -17.36019 -17.05963 -16.96495 -16.53924 -16.44847 -16.03397 -15.45556 -15.22168 -15.10895 -14.79439 -14.70945 -14.02926 -13.95139 -13.91577 -13.84148 -13.43061 -13.22894 -12.82931 -12.63295 -12.43524 -12.32849 -12.12727 -12.01053 -11.93710 -11.77273 -11.65878 -11.45890 -11.36942 -11.11355 -11.00756 -10.94650 -10.69719 -10.57460 -9.93450 -9.91102 -9.77544 -9.36659 -9.08358 -8.99153 -8.89280 -8.55058 -7.65122 -7.02250 -6.74452 -4.24656 1.02202 1.05588 2.76527 2.96912 3.07193 3.11418 3.21775 3.40157 3.44800 3.94084 4.08756 4.35608 4.46237 4.54620 4.56861 4.61051 4.67276 4.77260 4.83921 4.88311 5.03602 5.09994 5.16891 5.22410 5.24599 5.30773 5.37257 5.43197 5.48854 5.64287 5.66598 5.67837 5.69155 5.70821 5.84450 6.05653 6.10690 6.11274 6.19822 6.28242 6.29316 6.68713 6.69022 6.73899 6.78005 6.89834 7.06378 7.28143 7.41658 7.56091 7.81346 7.91601 8.00215 8.15860 8.44986 8.65352 8.89767 8.99672 10.19951 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.002017 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.873699 B =13881.791636 C =15039.094937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.197 4.197 11 C -0.111 4.111 12 C -0.011 4.011 13 O -0.318 6.318 14 C 0.038 3.962 15 C 0.119 3.881 16 H 0.102 0.898 17 O -0.539 6.539 18 C 0.017 3.983 19 N -0.511 5.511 20 C 0.050 3.950 21 C -0.124 4.124 22 C -0.076 4.076 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.115 4.115 28 C 0.091 3.909 29 C -0.174 4.174 30 C -0.137 4.137 31 H 0.279 0.721 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.371 0.629 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 -13.347 14.857 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.217 4.217 11 C -0.130 4.130 12 C -0.054 4.054 13 O -0.233 6.233 14 C -0.039 4.039 15 C 0.059 3.941 16 H 0.120 0.880 17 O -0.343 6.343 18 C -0.111 4.111 19 N -0.232 5.232 20 C -0.078 4.078 21 C -0.163 4.163 22 C -0.076 4.076 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.116 4.116 28 C -0.038 4.038 29 C -0.192 4.192 30 C -0.157 4.157 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.217 0.783 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.110 0.890 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.068 -14.073 14.451 23.505 hybrid contribution -0.149 2.107 0.999 2.337 sum -12.217 -11.966 15.450 23.047 Atomic orbital electron populations 1.69849 1.07570 1.29051 1.35958 1.25886 0.94683 1.01267 0.92339 0.86349 0.80800 0.80843 0.79019 1.19616 1.20129 1.18459 1.19468 0.98616 0.91390 1.39724 0.90477 1.17591 0.91829 0.92154 0.89974 1.20586 1.03253 0.92137 1.05698 1.19618 0.95622 0.97697 1.00086 1.18591 0.97705 0.83880 1.05230 1.85857 1.41842 1.30575 1.65069 1.23112 0.89151 0.97152 0.94482 1.21805 0.94147 0.92848 0.85322 0.88004 1.86612 1.57334 1.51466 1.38891 1.22861 0.98320 0.90774 0.99191 1.62543 1.03937 1.13838 1.42840 1.22277 0.96650 0.96227 0.92630 1.21189 0.95880 1.01071 0.98120 1.19577 0.94307 0.99251 0.94479 1.21129 0.99115 0.99247 0.94111 1.21106 0.93091 0.99762 0.99908 1.21101 0.97316 1.00201 0.95512 1.21084 0.98467 0.99031 0.94686 1.20442 0.93260 0.99962 0.97956 1.21195 0.92805 1.01986 0.87765 1.20589 1.01256 0.92905 1.04499 1.20944 0.98593 0.96570 0.99555 0.91014 0.88218 0.88476 0.92839 0.92717 0.78287 0.90229 0.92665 0.90301 0.89333 0.89938 0.89899 0.86114 0.86110 0.86118 0.86033 0.89122 0.89546 0.88994 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.67 10.95 55.54 0.61 -20.06 16 2 C 0.08 1.89 5.12 -17.34 -0.09 1.80 16 3 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.31 9.04 -37.83 -0.34 -12.65 16 8 H 0.08 1.97 7.91 -52.48 -0.42 1.55 16 9 C 0.09 2.33 5.58 -106.81 -0.60 1.74 16 10 C -0.20 -4.91 9.74 -39.25 -0.38 -5.30 16 11 C -0.11 -2.64 9.92 -39.83 -0.40 -3.04 16 12 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 13 O -0.32 -6.56 10.09 -23.56 -0.24 -6.80 16 14 C 0.04 0.61 4.36 37.16 0.16 0.77 16 15 C 0.12 1.53 3.17 -26.73 -0.08 1.44 16 16 H 0.10 1.36 6.84 -51.93 -0.36 1.00 16 17 O -0.54 -7.53 13.15 -40.08 -0.53 -8.06 16 18 C 0.02 0.18 3.99 -3.82 -0.02 0.16 16 19 N -0.51 -4.96 4.86 -236.20 -1.15 -6.11 16 20 C 0.05 0.45 5.65 -3.73 -0.02 0.43 16 21 C -0.12 -1.08 5.15 -27.93 -0.14 -1.22 16 22 C -0.08 -0.72 5.12 -104.60 -0.54 -1.25 16 23 C -0.12 -1.06 9.66 -39.50 -0.38 -1.45 16 24 C -0.12 -1.01 10.05 -39.65 -0.40 -1.41 16 25 C -0.12 -1.00 10.05 -39.65 -0.40 -1.40 16 26 C -0.11 -0.96 9.65 -39.48 -0.38 -1.34 16 27 C -0.11 -1.05 5.40 -104.63 -0.57 -1.61 16 28 C 0.09 0.76 5.54 -5.16 -0.03 0.73 16 29 C -0.17 -4.10 8.96 -39.83 -0.36 -4.46 16 30 C -0.14 -3.58 8.66 -39.25 -0.34 -3.92 16 31 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 32 H 0.10 2.31 8.06 -52.48 -0.42 1.88 16 33 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.05 0.83 7.63 -51.93 -0.40 0.43 16 35 H 0.05 0.84 7.66 -51.92 -0.40 0.44 16 36 H 0.37 4.09 9.05 45.56 0.41 4.50 16 37 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.06 0.59 5.27 -51.93 -0.27 0.32 16 39 H 0.08 0.65 8.05 -51.93 -0.42 0.24 16 40 H 0.09 0.84 6.95 -51.93 -0.36 0.48 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.78 6.66 -51.93 -0.35 0.43 16 43 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 49 H 0.09 1.93 6.27 -52.49 -0.33 1.60 16 50 H 0.12 3.23 6.11 -52.49 -0.32 2.91 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -30.36 398.57 -12.42 -42.77 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.54 Total: 11.10 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -5.55 Total: -32.48 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: -0.54 Total: -26.17 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.76 Total: -14.86 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.36 -12.42 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025865760.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.194 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds