Wall clock time and date at job start Tue Mar 31 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46670 * 180.02562 * 14 13 12 16 16 H 1.08993 * 109.47291 * 304.99686 * 15 14 13 17 17 O 1.42897 * 109.47481 * 65.00070 * 15 14 13 18 18 C 1.53007 * 109.46911 * 184.99704 * 15 14 13 19 19 N 1.46897 * 109.47133 * 179.97438 * 18 15 14 20 20 C 1.47165 * 110.99874 * 170.00047 * 19 18 15 21 21 C 1.52896 * 108.51146 * 52.12877 * 20 19 18 22 22 C 1.50726 * 109.96300 * 50.33000 * 21 20 19 23 23 C 1.38673 * 118.48685 * 163.27489 * 22 21 20 24 24 C 1.38035 * 120.35330 * 179.82613 * 23 22 21 25 25 C 1.38257 * 119.82258 * 359.97438 * 24 23 22 26 26 C 1.38010 * 119.87168 * 0.05003 * 25 24 23 27 27 C 1.37828 * 121.66516 * 343.22203 * 22 21 20 28 28 C 1.46638 * 111.00295 * 292.97705 * 19 18 15 29 29 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 30 30 C 1.36433 * 120.18865 * 359.97438 * 29 12 11 31 31 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 32 32 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 33 33 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 34 34 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 35 35 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 36 36 H 0.96700 * 114.00363 * 59.99736 * 17 15 14 37 37 H 1.08993 * 109.47129 * 300.00081 * 18 15 14 38 38 H 1.09000 * 109.46757 * 60.00265 * 18 15 14 39 39 H 1.09000 * 109.62844 * 171.83291 * 20 19 18 40 40 H 1.08995 * 109.63249 * 292.42311 * 20 19 18 41 41 H 1.08989 * 109.38991 * 170.48000 * 21 20 19 42 42 H 1.09003 * 109.38680 * 290.28364 * 21 20 19 43 43 H 1.08005 * 119.82762 * 359.82824 * 23 22 21 44 44 H 1.07998 * 120.08895 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.06491 * 180.02562 * 25 24 23 46 46 H 1.08007 * 119.81582 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.30164 * 49.45163 * 28 19 18 48 48 H 1.09000 * 109.30213 * 168.83277 * 28 19 18 49 49 H 1.08003 * 119.90956 * 180.02562 * 29 12 11 50 50 H 1.08001 * 120.10139 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8569 -8.2845 -1.4827 16 1 -1.9050 -8.1256 -1.2294 17 8 -0.7191 -8.3801 -2.9018 18 6 -0.3662 -9.5806 -0.8343 19 7 -1.1664 -10.7089 -1.3286 20 6 -0.5784 -11.9933 -0.9160 21 6 -0.3526 -11.9605 0.5958 22 6 -1.6123 -11.5173 1.2948 23 6 -1.7321 -11.7548 2.6558 24 6 -2.8677 -11.3619 3.3351 25 6 -3.8909 -10.7277 2.6551 26 6 -3.7729 -10.4913 1.3005 27 6 -2.6333 -10.8879 0.6158 28 6 -2.5537 -10.6133 -0.8631 29 6 1.1839 -4.7955 -0.2800 30 6 1.8220 -3.6476 0.0897 31 1 -0.4850 0.8401 0.0004 32 1 -0.1294 -1.4092 -1.5968 33 1 -1.2585 -3.4809 -2.2359 34 1 1.0086 -7.2238 -1.2974 35 1 -0.0572 -7.0898 0.1219 36 1 0.1897 -8.5221 -3.2001 37 1 0.6819 -9.7394 -1.0876 38 1 -0.4714 -9.5077 0.2482 39 1 -1.2604 -12.8057 -1.1668 40 1 0.3740 -12.1405 -1.4253 41 1 -0.0778 -12.9566 0.9424 42 1 0.4521 -11.2623 0.8264 43 1 -0.9327 -12.2498 3.1871 44 1 -2.9567 -11.5493 4.3950 45 1 -4.7809 -10.4183 3.1828 46 1 -4.5726 -9.9955 0.7702 47 1 -2.9330 -9.6114 -1.0643 48 1 -3.1642 -11.3406 -1.3982 49 1 1.5419 -5.7496 0.0778 50 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025865764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:17 Heat of formation + Delta-G solvation = -38.695721 kcal Electronic energy + Delta-G solvation = -30324.024151 eV Core-core repulsion = 26280.748037 eV Total energy + Delta-G solvation = -4043.276114 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.85158 -39.00789 -37.97879 -36.74788 -35.83006 -33.30217 -33.06981 -31.72738 -30.56223 -29.70848 -29.26147 -28.92945 -26.57407 -24.80337 -24.37308 -23.12622 -22.51347 -21.97873 -20.69565 -20.56934 -19.48533 -17.35122 -17.10228 -16.91812 -16.56047 -16.26849 -15.83360 -15.66451 -15.37033 -15.14911 -14.82319 -14.45740 -14.13936 -13.99353 -13.92000 -13.67941 -13.44643 -13.28068 -12.85737 -12.77848 -12.45058 -12.26715 -12.13530 -11.95190 -11.90065 -11.79427 -11.70491 -11.38466 -11.33953 -11.15498 -11.08584 -10.88410 -10.67716 -10.57735 -9.97943 -9.86825 -9.80988 -9.32029 -9.04191 -9.02326 -8.84759 -8.57951 -7.63700 -7.01878 -6.71570 -4.24842 1.06132 1.09793 2.78412 2.95679 3.09221 3.12810 3.21945 3.41141 3.46650 3.95828 4.08381 4.34908 4.45266 4.54757 4.56740 4.63090 4.66663 4.79054 4.84262 4.85370 5.02271 5.14735 5.17801 5.20578 5.25237 5.28134 5.39166 5.47280 5.51072 5.53330 5.63972 5.65568 5.68184 5.72595 5.81888 6.03323 6.06738 6.16122 6.23664 6.24821 6.30153 6.70052 6.73056 6.73128 6.76471 6.98425 7.12000 7.19297 7.46843 7.56529 7.78924 7.80463 8.01501 8.21067 8.46265 8.66312 8.90699 8.99604 10.23177 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.001955 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.623406 B =14321.847870 C =15010.785787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.008 4.008 13 O -0.317 6.317 14 C 0.039 3.961 15 C 0.117 3.883 16 H 0.103 0.897 17 O -0.539 6.539 18 C 0.020 3.980 19 N -0.511 5.511 20 C 0.053 3.947 21 C -0.120 4.120 22 C -0.080 4.080 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.112 4.112 27 C -0.112 4.112 28 C 0.086 3.914 29 C -0.168 4.168 30 C -0.198 4.198 31 H 0.280 0.720 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.370 0.630 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -23.327 2.219 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.086 3.914 10 C -0.152 4.152 11 C -0.138 4.138 12 C -0.051 4.051 13 O -0.232 6.232 14 C -0.038 4.038 15 C 0.057 3.943 16 H 0.120 0.880 17 O -0.343 6.343 18 C -0.108 4.108 19 N -0.232 5.232 20 C -0.075 4.075 21 C -0.159 4.159 22 C -0.080 4.080 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.131 4.131 27 C -0.114 4.114 28 C -0.042 4.042 29 C -0.187 4.187 30 C -0.218 4.218 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.216 0.784 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.110 0.890 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.984 -23.063 1.585 23.649 hybrid contribution 1.128 0.611 1.542 2.006 sum -3.856 -22.452 3.127 22.994 Atomic orbital electron populations 1.69840 1.07500 1.29102 1.36063 1.25879 0.94717 1.01208 0.92389 0.86318 0.80536 0.80829 0.79111 1.19373 1.20375 1.18689 1.19468 0.98102 0.91244 1.40640 0.90554 1.17594 0.91854 0.92105 0.89848 1.20963 0.98551 0.96272 0.99428 1.19842 1.00868 0.90237 1.02837 1.18621 0.97003 0.84861 1.04611 1.85888 1.54862 1.12028 1.70456 1.23102 0.97215 0.85223 0.98308 1.21855 1.00672 0.90036 0.81764 0.87951 1.86626 1.32579 1.95156 1.19914 1.22786 0.98164 0.91329 0.98524 1.62532 1.01629 1.01559 1.57474 1.22266 1.00873 0.92053 0.92355 1.21164 0.95298 1.02214 0.97196 1.19532 0.95674 0.98911 0.93921 1.21086 0.98097 1.00750 0.93781 1.21103 0.94032 0.98936 0.99833 1.21120 0.99067 0.99113 0.94570 1.21130 0.97521 0.99860 0.94577 1.20432 0.94452 0.98876 0.97620 1.21242 0.90899 1.03469 0.88622 1.20388 0.98079 0.97699 1.02538 1.20559 1.03228 0.92546 1.05485 0.90940 0.85765 0.88420 0.92928 0.92692 0.78360 0.90086 0.92932 0.90234 0.89833 0.90187 0.90273 0.86265 0.86117 0.86005 0.85842 0.88963 0.89125 0.89018 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.88 11.00 55.55 0.61 -20.26 16 2 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 3 Si 0.91 18.82 29.60 -169.99 -5.03 13.79 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.42 9.04 -37.83 -0.34 -12.76 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 9 C 0.09 2.38 5.57 -106.80 -0.59 1.79 16 10 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 11 C -0.12 -2.94 9.92 -39.83 -0.40 -3.33 16 12 C -0.01 -0.18 6.71 -38.78 -0.26 -0.44 16 13 O -0.32 -6.60 10.09 -23.58 -0.24 -6.84 16 14 C 0.04 0.61 4.37 37.16 0.16 0.77 16 15 C 0.12 1.51 3.16 -26.73 -0.08 1.42 16 16 H 0.10 1.43 6.39 -51.93 -0.33 1.10 16 17 O -0.54 -7.43 13.17 -40.08 -0.53 -7.96 16 18 C 0.02 0.21 3.59 -3.82 -0.01 0.19 16 19 N -0.51 -4.89 4.88 -236.19 -1.15 -6.04 16 20 C 0.05 0.40 6.02 -3.73 -0.02 0.38 16 21 C -0.12 -0.91 5.17 -27.92 -0.14 -1.06 16 22 C -0.08 -0.75 5.05 -104.60 -0.53 -1.28 16 23 C -0.12 -1.07 9.66 -39.49 -0.38 -1.46 16 24 C -0.12 -1.07 10.05 -39.65 -0.40 -1.47 16 25 C -0.12 -1.10 10.05 -39.66 -0.40 -1.50 16 26 C -0.11 -1.08 9.65 -39.48 -0.38 -1.46 16 27 C -0.11 -1.11 5.19 -104.63 -0.54 -1.65 16 28 C 0.09 0.82 5.43 -5.16 -0.03 0.79 16 29 C -0.17 -3.84 8.96 -39.83 -0.36 -4.19 16 30 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 31 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 32 H 0.12 3.35 6.21 -52.49 -0.33 3.03 16 33 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 34 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 35 H 0.05 0.85 7.65 -51.93 -0.40 0.45 16 36 H 0.37 3.90 9.05 45.56 0.41 4.31 16 37 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.05 0.57 5.90 -51.93 -0.31 0.26 16 39 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.50 8.14 -51.94 -0.42 0.08 16 42 H 0.08 0.61 7.06 -51.93 -0.37 0.25 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 47 H 0.09 0.96 6.09 -51.93 -0.32 0.64 16 48 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.09 1.80 6.27 -52.48 -0.33 1.48 16 50 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -30.60 398.49 -12.40 -43.00 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.55 Total: 10.91 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -5.52 Total: -32.60 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: -0.54 Total: -26.31 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.77 Total: -14.80 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.60 -12.40 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025865764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.307 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds