Wall clock time and date at job start Tue Mar 31 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46670 * 180.02562 * 14 13 12 16 16 H 1.08993 * 109.47291 * 304.99686 * 15 14 13 17 17 O 1.42897 * 109.47481 * 65.00070 * 15 14 13 18 18 C 1.53007 * 109.46911 * 184.99704 * 15 14 13 19 19 N 1.46897 * 109.47133 * 179.97438 * 18 15 14 20 20 C 1.47165 * 110.99874 * 170.00047 * 19 18 15 21 21 C 1.52896 * 108.51146 * 52.12877 * 20 19 18 22 22 C 1.50726 * 109.96300 * 50.33000 * 21 20 19 23 23 C 1.38673 * 118.48685 * 163.27489 * 22 21 20 24 24 C 1.38035 * 120.35330 * 179.82613 * 23 22 21 25 25 C 1.38257 * 119.82258 * 359.97438 * 24 23 22 26 26 C 1.38010 * 119.87168 * 0.05003 * 25 24 23 27 27 C 1.37828 * 121.66516 * 343.22203 * 22 21 20 28 28 C 1.46638 * 111.00295 * 292.97705 * 19 18 15 29 29 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 30 30 C 1.36433 * 120.18865 * 359.97438 * 29 12 11 31 31 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 32 32 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 33 33 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 34 34 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 35 35 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 36 36 H 0.96700 * 114.00363 * 59.99736 * 17 15 14 37 37 H 1.08993 * 109.47129 * 300.00081 * 18 15 14 38 38 H 1.09000 * 109.46757 * 60.00265 * 18 15 14 39 39 H 1.09000 * 109.62844 * 171.83291 * 20 19 18 40 40 H 1.08995 * 109.63249 * 292.42311 * 20 19 18 41 41 H 1.08989 * 109.38991 * 170.48000 * 21 20 19 42 42 H 1.09003 * 109.38680 * 290.28364 * 21 20 19 43 43 H 1.08005 * 119.82762 * 359.82824 * 23 22 21 44 44 H 1.07998 * 120.08895 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.06491 * 180.02562 * 25 24 23 46 46 H 1.08007 * 119.81582 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.30164 * 49.45163 * 28 19 18 48 48 H 1.09000 * 109.30213 * 168.83277 * 28 19 18 49 49 H 1.08003 * 119.90956 * 180.02562 * 29 12 11 50 50 H 1.08001 * 120.10139 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8569 -8.2845 -1.4827 16 1 -1.9050 -8.1256 -1.2294 17 8 -0.7191 -8.3801 -2.9018 18 6 -0.3662 -9.5806 -0.8343 19 7 -1.1664 -10.7089 -1.3286 20 6 -0.5784 -11.9933 -0.9160 21 6 -0.3526 -11.9605 0.5958 22 6 -1.6123 -11.5173 1.2948 23 6 -1.7321 -11.7548 2.6558 24 6 -2.8677 -11.3619 3.3351 25 6 -3.8909 -10.7277 2.6551 26 6 -3.7729 -10.4913 1.3005 27 6 -2.6333 -10.8879 0.6158 28 6 -2.5537 -10.6133 -0.8631 29 6 1.1839 -4.7955 -0.2800 30 6 1.8220 -3.6476 0.0897 31 1 -0.4850 0.8401 0.0004 32 1 -0.1294 -1.4092 -1.5968 33 1 -1.2585 -3.4809 -2.2359 34 1 1.0086 -7.2238 -1.2974 35 1 -0.0572 -7.0898 0.1219 36 1 0.1897 -8.5221 -3.2001 37 1 0.6819 -9.7394 -1.0876 38 1 -0.4714 -9.5077 0.2482 39 1 -1.2604 -12.8057 -1.1668 40 1 0.3740 -12.1405 -1.4253 41 1 -0.0778 -12.9566 0.9424 42 1 0.4521 -11.2623 0.8264 43 1 -0.9327 -12.2498 3.1871 44 1 -2.9567 -11.5493 4.3950 45 1 -4.7809 -10.4183 3.1828 46 1 -4.5726 -9.9955 0.7702 47 1 -2.9330 -9.6114 -1.0643 48 1 -3.1642 -11.3406 -1.3982 49 1 1.5419 -5.7496 0.0778 50 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025865764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:15 Heat of formation + Delta-G solvation = -56.614499 kcal Electronic energy + Delta-G solvation = -30324.801167 eV Core-core repulsion = 26280.748037 eV Total energy + Delta-G solvation = -4044.053130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.55975 -40.59132 -39.05276 -38.09164 -37.09042 -35.18276 -33.73721 -32.56610 -31.87261 -31.20739 -30.80079 -29.96816 -27.68457 -26.49200 -25.24562 -23.99219 -23.25852 -23.06641 -22.49100 -22.17743 -20.24031 -19.26060 -18.64895 -17.65666 -17.58735 -17.40303 -17.05604 -16.59847 -16.49849 -16.19883 -15.77644 -15.71716 -15.62133 -15.27670 -14.87751 -14.68194 -14.58949 -14.26801 -14.08109 -13.99772 -13.92292 -13.60967 -13.43071 -13.09855 -13.04140 -12.82012 -12.69851 -12.62845 -12.53808 -12.42728 -12.36960 -12.00477 -11.96585 -11.70620 -11.59675 -11.49297 -11.20283 -10.92978 -10.89123 -9.72302 -9.57474 -9.52566 -9.29841 -8.93146 -8.60182 -6.23547 0.37996 0.41582 0.94092 1.01410 1.39654 1.52271 1.53267 2.22573 2.34904 2.71927 2.77683 3.04012 3.54227 3.69260 3.70725 3.78363 3.86844 3.92391 3.94816 4.03719 4.12021 4.21138 4.25053 4.27309 4.33244 4.36795 4.42477 4.48219 4.53987 4.60866 4.68316 4.71616 4.84662 4.85963 4.92821 5.01579 5.02570 5.06483 5.07606 5.20102 5.20723 5.27644 5.48073 5.57131 5.57952 5.62374 5.63640 5.87443 6.01541 6.03607 6.05126 6.07856 6.25309 6.55805 6.79610 6.91318 6.94457 7.09283 8.36805 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.001955 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.623406 B =14321.847870 C =15010.785787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.055 3.945 10 C -0.152 4.152 11 C -0.134 4.134 12 C 0.001 3.999 13 O -0.331 6.331 14 C 0.031 3.969 15 C 0.127 3.873 16 H 0.087 0.913 17 O -0.556 6.556 18 C 0.033 3.967 19 N -0.518 5.518 20 C 0.054 3.946 21 C -0.116 4.116 22 C -0.091 4.091 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.133 4.133 26 C -0.129 4.129 27 C -0.125 4.125 28 C 0.088 3.912 29 C -0.165 4.165 30 C -0.208 4.208 31 H 0.287 0.713 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.384 0.616 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.128 0.872 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.128 0.872 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -24.907 2.740 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.053 3.947 10 C -0.171 4.171 11 C -0.153 4.153 12 C -0.043 4.043 13 O -0.246 6.246 14 C -0.045 4.045 15 C 0.067 3.933 16 H 0.105 0.895 17 O -0.362 6.362 18 C -0.095 4.095 19 N -0.239 5.239 20 C -0.074 4.074 21 C -0.154 4.154 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.127 4.127 28 C -0.040 4.040 29 C -0.183 4.183 30 C -0.227 4.227 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.146 0.854 47 H 0.097 0.903 48 H 0.113 0.887 49 H 0.146 0.854 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.736 -24.681 2.102 25.050 hybrid contribution 0.659 0.907 1.371 1.771 sum -3.077 -23.774 3.473 24.222 Atomic orbital electron populations 1.69897 1.09012 1.30462 1.36531 1.26756 0.95481 1.04540 0.91341 0.85182 0.79126 0.75999 0.79315 1.18801 1.19404 1.18112 1.19720 0.98381 0.92378 1.42416 0.90514 1.17951 0.92617 0.93380 0.90719 1.20882 0.99439 0.96314 1.00511 1.20007 1.01259 0.90717 1.03329 1.18692 0.96651 0.85493 1.03489 1.85883 1.55243 1.12778 1.70740 1.23475 0.98604 0.83697 0.98716 1.21741 0.99529 0.90386 0.81674 0.89470 1.86598 1.34071 1.95198 1.20309 1.22616 0.99041 0.90068 0.97770 1.62526 1.01522 1.02204 1.57663 1.22342 1.01504 0.90948 0.92603 1.21170 0.94336 1.03068 0.96857 1.19813 0.96217 0.98728 0.94347 1.21377 0.98662 1.00757 0.93892 1.21410 0.93916 0.98548 1.00863 1.21380 0.99876 0.99237 0.94576 1.21344 0.97943 1.00320 0.95147 1.20528 0.94907 0.99493 0.97726 1.21175 0.91199 1.02804 0.88805 1.20685 0.97330 0.98657 1.01642 1.20812 1.03759 0.92558 1.05590 0.90223 0.87347 0.87591 0.91206 0.92189 0.76715 0.88198 0.93399 0.89915 0.88345 0.88570 0.90152 0.84576 0.84356 0.84672 0.85368 0.90346 0.88654 0.85434 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.53 11.00 21.82 0.24 -44.29 16 2 C 0.03 1.67 5.13 85.24 0.44 2.11 16 3 Si 0.98 38.74 29.60 68.60 2.03 40.77 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.50 -27.26 9.04 23.40 0.21 -27.04 16 8 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 9 C 0.06 3.06 5.57 -21.28 -0.12 2.94 16 10 C -0.15 -8.31 8.64 22.49 0.19 -8.11 16 11 C -0.13 -6.76 9.92 22.11 0.22 -6.54 16 12 C 0.00 0.03 6.71 22.79 0.15 0.18 16 13 O -0.33 -13.43 10.09 -85.28 -0.86 -14.29 16 14 C 0.03 0.92 4.37 71.98 0.31 1.23 16 15 C 0.13 3.09 3.16 30.60 0.10 3.19 16 16 H 0.09 2.41 6.39 -2.39 -0.02 2.39 16 17 O -0.56 -14.47 13.17 -144.34 -1.90 -16.37 16 18 C 0.03 0.60 3.59 86.31 0.31 0.91 16 19 N -0.52 -8.97 4.88 -901.16 -4.40 -13.37 16 20 C 0.05 0.68 6.02 86.22 0.52 1.20 16 21 C -0.12 -1.46 5.17 29.82 0.15 -1.31 16 22 C -0.09 -1.56 5.05 -19.85 -0.10 -1.66 16 23 C -0.13 -2.10 9.66 22.33 0.22 -1.89 16 24 C -0.13 -2.12 10.05 22.23 0.22 -1.90 16 25 C -0.13 -2.32 10.05 22.22 0.22 -2.10 16 26 C -0.13 -2.45 9.65 22.33 0.22 -2.24 16 27 C -0.12 -2.37 5.19 -19.87 -0.10 -2.47 16 28 C 0.09 1.63 5.43 85.58 0.46 2.10 16 29 C -0.16 -7.28 8.96 22.11 0.20 -7.08 16 30 C -0.21 -10.25 9.74 22.48 0.22 -10.03 16 31 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 32 H 0.11 6.15 6.21 -2.91 -0.02 6.13 16 33 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 34 H 0.07 1.82 7.64 -2.39 -0.02 1.81 16 35 H 0.06 1.72 7.65 -2.39 -0.02 1.70 16 36 H 0.38 7.27 9.05 -74.06 -0.67 6.60 16 37 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 38 H 0.05 0.93 5.90 -2.39 -0.01 0.92 16 39 H 0.08 1.02 8.05 -2.39 -0.02 1.00 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 1.01 7.06 -2.39 -0.02 1.00 16 43 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 44 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 47 H 0.08 1.64 6.09 -2.39 -0.01 1.63 16 48 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.13 4.63 6.27 -2.91 -0.02 4.62 16 50 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -66.59 398.49 -0.56 -67.15 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.29 Total: 38.91 kcal Atomic # 6 Polarization: -62.55 SS G_CDS: 4.05 Total: -58.50 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -4.16 Total: -57.65 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -2.76 Total: -30.66 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -66.59 -0.56 -67.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025865764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.531 kcal (2) G-P(sol) polarization free energy of solvation -66.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds