Wall clock time and date at job start Tue Mar 31 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47234 * 2 1 4 4 C 1.52996 * 109.47368 * 120.00253 * 2 1 3 5 5 N 1.46902 * 109.47481 * 109.70104 * 4 2 1 6 6 C 1.46893 * 111.00039 * 60.54251 * 5 4 2 7 7 C 1.50703 * 109.46909 * 63.95898 * 6 5 4 8 8 H 1.08005 * 120.00030 * 5.08837 * 7 6 5 9 9 C 1.37885 * 119.99953 * 185.09290 * 7 6 5 10 10 N 1.31514 * 119.99566 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99883 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46800 * 90.00850 * 11 9 7 13 13 H 1.48505 * 109.46790 * 210.00342 * 11 9 7 14 14 H 1.48494 * 109.47431 * 330.00471 * 11 9 7 15 15 C 1.46905 * 110.99917 * 296.59334 * 5 4 2 16 16 C 1.52998 * 109.47087 * 279.49202 * 15 5 4 17 17 H 1.09002 * 109.47114 * 306.91970 * 16 15 5 18 18 O 1.42900 * 109.47361 * 66.91755 * 16 15 5 19 19 C 1.53004 * 109.47218 * 186.92179 * 16 15 5 20 20 O 1.42897 * 109.46861 * 174.99889 * 19 16 15 21 21 C 1.35904 * 116.99813 * 179.97438 * 20 19 16 22 22 C 1.38752 * 120.05436 * 359.73030 * 21 20 19 23 23 C 1.38118 * 119.94355 * 179.79132 * 22 21 20 24 24 C 1.38287 * 120.05740 * 0.47461 * 23 22 21 25 25 C 1.38241 * 120.11304 * 359.75462 * 24 23 22 26 26 N 1.47998 * 119.97489 * 179.97438 * 25 24 23 27 27 O 1.21810 * 119.99749 * 180.02562 * 26 25 24 28 28 O 1.21798 * 120.00296 * 0.02562 * 26 25 24 29 29 C 1.38176 * 120.05064 * 0.02562 * 25 24 23 30 30 H 1.09010 * 109.47058 * 196.16746 * 1 2 3 31 31 H 1.08991 * 109.47438 * 316.16784 * 1 2 3 32 32 H 1.09004 * 109.47267 * 76.17338 * 1 2 3 33 33 H 1.09001 * 109.47117 * 240.00363 * 2 1 3 34 34 H 1.08997 * 109.47364 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47437 * 300.00533 * 3 2 1 36 36 H 1.09004 * 109.47228 * 59.99907 * 3 2 1 37 37 H 1.09004 * 109.46863 * 349.70085 * 4 2 1 38 38 H 1.09005 * 109.47207 * 229.70085 * 4 2 1 39 39 H 1.09000 * 109.47591 * 183.95410 * 6 5 4 40 40 H 1.08998 * 109.47669 * 303.95714 * 6 5 4 41 41 H 0.97001 * 119.99680 * 179.97438 * 10 9 7 42 42 H 1.08990 * 109.47237 * 159.49102 * 15 5 4 43 43 H 1.09004 * 109.46973 * 39.48930 * 15 5 4 44 44 H 0.96705 * 113.99752 * 70.07367 * 18 16 15 45 45 H 1.08994 * 109.46683 * 294.99406 * 19 16 15 46 46 H 1.09000 * 109.46926 * 55.00033 * 19 16 15 47 47 H 1.07998 * 120.02965 * 359.97438 * 22 21 20 48 48 H 1.08001 * 119.97271 * 180.22703 * 23 22 21 49 49 H 1.08002 * 119.94785 * 179.76491 * 24 23 22 50 50 H 1.08001 * 120.02368 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.6435 -2.0035 0.8622 6 6 3.7791 -1.7979 -0.0465 7 6 4.8669 -1.0419 0.6719 8 1 4.7637 -0.8157 1.7230 9 6 5.9939 -0.6387 -0.0126 10 7 6.9429 0.0215 0.6143 11 14 6.1727 -1.0304 -1.8303 12 1 5.5920 0.0749 -2.6342 13 1 7.6116 -1.1827 -2.1646 14 1 5.4567 -2.2947 -2.1370 15 6 1.6433 -2.8960 0.2613 16 6 0.8290 -3.5683 1.3685 17 1 1.5050 -4.0451 2.0782 18 8 0.0432 -2.5854 2.0457 19 6 -0.0930 -4.6237 0.7543 20 8 -0.7675 -5.3314 1.7965 21 6 -1.6310 -6.3105 1.4188 22 6 -1.8292 -6.5807 0.0723 23 6 -2.7040 -7.5792 -0.3089 24 6 -3.3895 -8.3028 0.6497 25 6 -3.1974 -8.0323 1.9917 26 7 -3.9331 -8.8082 3.0150 27 8 -3.7645 -8.5699 4.1976 28 8 -4.7070 -9.6849 2.6747 29 6 -2.3199 -7.0375 2.3784 30 1 -0.3634 -0.9871 0.2862 31 1 -0.3634 0.7413 0.7116 32 1 -0.3634 0.2456 -0.9979 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.2078 -0.9020 1.9296 38 1 2.7878 -0.1030 1.7459 39 1 4.1631 -2.7645 -0.3727 40 1 3.4512 -1.2257 -0.9143 41 1 7.7359 0.3048 0.1329 42 1 2.1469 -3.6582 -0.3331 43 1 0.9776 -2.3170 -0.3788 44 1 -0.6835 -2.2297 1.5161 45 1 -0.8266 -4.1360 0.1125 46 1 0.4985 -5.3235 0.1639 47 1 -1.2976 -6.0128 -0.6769 48 1 -2.8558 -7.7925 -1.3568 49 1 -4.0760 -9.0806 0.3494 50 1 -2.1699 -6.8268 3.4269 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026711772.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:53 Heat of formation + Delta-G solvation = -57.341191 kcal Electronic energy + Delta-G solvation = -31372.732948 eV Core-core repulsion = 26983.224954 eV Total energy + Delta-G solvation = -4389.507994 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.52587 -40.86161 -39.10007 -38.03831 -36.89091 -36.30679 -33.76139 -32.52032 -32.43896 -31.50908 -30.25060 -28.02956 -27.09479 -26.87773 -26.07649 -24.05421 -23.52858 -22.49137 -21.53295 -21.19952 -20.03291 -19.15029 -19.00668 -17.86862 -17.55686 -17.28013 -16.94283 -16.75194 -16.70521 -15.79021 -15.72055 -14.99464 -14.75674 -14.63847 -14.22163 -13.89581 -13.78338 -13.42963 -13.32322 -13.07291 -12.95707 -12.86138 -12.44394 -12.23493 -11.97699 -11.87580 -11.72114 -11.65658 -11.52821 -11.45309 -11.38884 -11.16145 -11.08334 -10.86504 -10.66630 -10.63948 -10.40780 -10.30901 -10.17707 -9.89327 -9.58364 -9.23836 -9.09399 -8.63452 -7.38152 -6.10752 -4.07579 -0.60508 0.47859 0.94112 0.95633 2.47706 2.76525 3.19667 3.27869 3.28798 3.86936 4.07281 4.12363 4.19729 4.25981 4.32398 4.34602 4.46274 4.60693 4.80705 4.93266 4.95575 5.15189 5.20275 5.21811 5.23800 5.32253 5.36274 5.38454 5.42835 5.44728 5.55420 5.71047 5.87237 5.96003 6.02257 6.04658 6.09958 6.16750 6.34926 6.42504 6.49763 6.65936 6.79328 6.82999 6.91424 7.07921 7.28939 7.53067 7.57682 7.83504 7.99681 8.59730 8.99675 9.50853 11.02348 Molecular weight = 352.19amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.001980 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.591311 B =14135.243988 C =14584.867497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C -0.141 4.141 4 C 0.059 3.941 5 N -0.516 5.516 6 C 0.159 3.841 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.872 3.128 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.020 3.980 16 C 0.119 3.881 17 H 0.119 0.881 18 O -0.539 6.539 19 C 0.022 3.978 20 O -0.290 6.290 21 C 0.142 3.858 22 C -0.162 4.162 23 C -0.075 4.075 24 C -0.099 4.099 25 C -0.005 4.005 26 N 0.027 4.973 27 O -0.152 6.152 28 O -0.157 6.157 29 C -0.093 4.093 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.023 0.977 40 H -0.010 1.010 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.363 0.637 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.148 0.852 48 H 0.151 0.849 49 H 0.154 0.846 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.172 -11.655 -4.962 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.199 4.199 4 C -0.069 4.069 5 N -0.238 5.238 6 C 0.033 3.967 7 C -0.542 4.542 8 H 0.099 0.901 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.699 3.301 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.110 4.110 16 C 0.059 3.941 17 H 0.137 0.863 18 O -0.345 6.345 19 C -0.054 4.054 20 O -0.203 6.203 21 C 0.095 3.905 22 C -0.181 4.181 23 C -0.093 4.093 24 C -0.119 4.119 25 C -0.088 4.088 26 N 0.548 4.452 27 O -0.370 6.370 28 O -0.373 6.373 29 C -0.113 4.113 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.008 0.992 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.211 0.789 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.165 0.835 48 H 0.168 0.832 49 H 0.172 0.828 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.943 -11.468 -4.381 23.418 hybrid contribution -0.530 0.116 -2.396 2.457 sum -20.472 -11.352 -6.777 24.370 Atomic orbital electron populations 1.22036 0.96518 1.00691 1.00708 1.21813 0.94430 0.97784 1.01171 1.21822 1.02758 0.95230 1.00074 1.22507 0.99487 0.89562 0.95354 1.62044 1.06782 1.12794 1.42142 1.20277 0.89069 0.96246 0.91144 1.20970 1.00627 1.34264 0.98380 0.90059 1.24887 0.95803 0.94890 0.97654 1.69887 1.08698 1.38789 1.36327 0.86926 0.77469 0.79109 0.86573 1.20385 1.21199 1.19454 1.22649 0.95786 0.97776 0.94742 1.22090 0.90323 0.85831 0.95892 0.86349 1.86746 1.46084 1.57612 1.44040 1.23931 0.95872 0.95565 0.89997 1.86244 1.53379 1.45089 1.35565 1.18663 0.90725 0.89461 0.91686 1.21812 1.00853 1.00160 0.95282 1.20996 0.94384 0.93827 1.00125 1.20968 1.00466 1.00921 0.89498 1.20722 1.00926 0.98658 0.88469 1.43556 0.99639 1.00027 1.01983 1.94580 1.69563 1.72175 1.00660 1.94540 1.31435 1.24521 1.86788 1.20117 0.95107 0.93952 1.02123 0.93513 0.92705 0.93840 0.91385 0.91056 0.94242 0.93241 0.89875 0.89718 0.95916 0.99203 0.92674 0.90848 0.94025 0.78898 0.91339 0.90370 0.83453 0.83176 0.82832 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.64 37.16 0.32 -1.34 16 2 C -0.13 -2.04 1.96 -90.62 -0.18 -2.22 16 3 C -0.14 -2.28 8.83 37.16 0.33 -1.95 16 4 C 0.06 1.03 4.92 -3.83 -0.02 1.01 16 5 N -0.52 -9.55 4.62 -236.07 -1.09 -10.64 16 6 C 0.16 3.51 3.48 -4.98 -0.02 3.49 16 7 C -0.50 -13.49 8.93 -34.44 -0.31 -13.80 16 8 H 0.08 2.42 7.41 -52.48 -0.39 2.03 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -26.62 13.96 55.43 0.77 -25.84 16 11 Si 0.87 20.60 27.37 -169.99 -4.65 15.94 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.07 6.69 56.52 0.38 -5.69 16 15 C 0.02 0.27 4.49 -3.82 -0.02 0.25 16 16 C 0.12 1.37 3.50 -26.73 -0.09 1.28 16 17 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 18 O -0.54 -6.58 10.48 -40.09 -0.42 -7.00 16 19 C 0.02 0.18 4.28 37.16 0.16 0.34 16 20 O -0.29 -2.86 10.10 -24.29 -0.25 -3.10 16 21 C 0.14 1.20 6.69 -39.22 -0.26 0.94 16 22 C -0.16 -0.98 9.04 -39.44 -0.36 -1.34 16 23 C -0.07 -0.38 10.04 -39.61 -0.40 -0.77 16 24 C -0.10 -0.67 9.55 -39.56 -0.38 -1.05 16 25 C -0.01 -0.05 6.85 -79.98 -0.55 -0.59 16 26 N 0.03 0.31 4.45 33.95 0.15 0.46 16 27 O -0.15 -1.91 18.45 -29.46 -0.54 -2.45 16 28 O -0.16 -1.83 18.44 -29.46 -0.54 -2.37 16 29 C -0.09 -0.86 9.49 -39.43 -0.37 -1.23 16 30 H 0.05 0.46 4.33 -51.92 -0.22 0.24 16 31 H 0.05 0.61 8.04 -51.93 -0.42 0.20 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.16 5.25 -51.93 -0.27 0.89 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.34 5.03 -51.93 -0.26 1.08 16 38 H 0.08 1.77 6.29 -51.93 -0.33 1.44 16 39 H 0.02 0.52 7.27 -51.93 -0.38 0.14 16 40 H -0.01 -0.21 5.14 -51.93 -0.27 -0.48 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 43 H 0.04 0.51 5.11 -51.93 -0.27 0.25 16 44 H 0.36 3.27 6.80 45.56 0.31 3.58 16 45 H 0.07 0.41 7.64 -51.93 -0.40 0.02 16 46 H 0.08 0.53 7.68 -51.93 -0.40 0.13 16 47 H 0.15 0.60 6.30 -52.49 -0.33 0.27 16 48 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 49 H 0.15 0.81 7.61 -52.49 -0.40 0.41 16 50 H 0.16 1.49 7.61 -52.49 -0.40 1.10 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -31.60 397.19 -9.33 -40.93 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.51 Total: 3.24 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.24 Total: -15.16 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.17 Total: -36.02 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.75 Total: -14.92 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.65 Total: 15.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.60 -9.33 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026711772.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.408 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds