Wall clock time and date at job start Tue Mar 31 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47086 * 2 1 4 4 C 1.52992 * 109.47041 * 120.00195 * 2 1 3 5 5 N 1.46903 * 109.47324 * 179.15789 * 4 2 1 6 6 C 1.46895 * 110.99830 * 286.45553 * 5 4 2 7 7 C 1.50697 * 109.47273 * 75.51058 * 6 5 4 8 8 H 1.07998 * 120.00140 * 5.29353 * 7 6 5 9 9 C 1.37876 * 120.00026 * 185.29331 * 7 6 5 10 10 N 1.31518 * 120.00084 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00198 * 0.02562 * 9 7 6 12 12 H 1.48490 * 109.47313 * 89.99566 * 11 9 7 13 13 H 1.48498 * 109.47045 * 210.00291 * 11 9 7 14 14 H 1.48502 * 109.46903 * 329.99579 * 11 9 7 15 15 C 1.46902 * 111.00159 * 162.49553 * 5 4 2 16 16 C 1.52998 * 109.47548 * 287.79271 * 15 5 4 17 17 H 1.09004 * 109.46647 * 59.88976 * 16 15 5 18 18 O 1.42893 * 109.46987 * 299.89138 * 16 15 5 19 19 C 1.53002 * 109.46984 * 179.88907 * 16 15 5 20 20 O 1.42896 * 109.46640 * 184.99901 * 19 16 15 21 21 C 1.35906 * 117.00087 * 180.02562 * 20 19 16 22 22 C 1.38760 * 120.05007 * 359.72364 * 21 20 19 23 23 C 1.38117 * 119.94205 * 179.79077 * 22 21 20 24 24 C 1.38298 * 120.05616 * 0.48918 * 23 22 21 25 25 C 1.38239 * 120.10882 * 359.74278 * 24 23 22 26 26 N 1.48007 * 119.97270 * 180.02562 * 25 24 23 27 27 O 1.21791 * 119.99888 * 180.02562 * 26 25 24 28 28 O 1.21804 * 119.99603 * 0.02562 * 26 25 24 29 29 C 1.38166 * 120.05542 * 0.02562 * 25 24 23 30 30 H 1.09003 * 109.47268 * 299.99850 * 1 2 3 31 31 H 1.09003 * 109.47016 * 59.99921 * 1 2 3 32 32 H 1.08998 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46971 * 239.99690 * 2 1 3 34 34 H 1.09001 * 109.47599 * 64.65134 * 3 2 1 35 35 H 1.09005 * 109.47420 * 184.64897 * 3 2 1 36 36 H 1.09005 * 109.47611 * 304.64865 * 3 2 1 37 37 H 1.08997 * 109.47374 * 59.15799 * 4 2 1 38 38 H 1.09004 * 109.47358 * 299.15737 * 4 2 1 39 39 H 1.09004 * 109.46796 * 195.50359 * 6 5 4 40 40 H 1.08991 * 109.47249 * 315.50553 * 6 5 4 41 41 H 0.96998 * 120.00251 * 180.02562 * 10 9 7 42 42 H 1.09002 * 109.46594 * 47.79413 * 15 5 4 43 43 H 1.09003 * 109.46830 * 167.78621 * 15 5 4 44 44 H 0.96697 * 114.00267 * 300.00080 * 18 16 15 45 45 H 1.08998 * 109.47232 * 305.00010 * 19 16 15 46 46 H 1.08999 * 109.46934 * 65.00144 * 19 16 15 47 47 H 1.08000 * 120.02963 * 0.02562 * 22 21 20 48 48 H 1.08002 * 119.97612 * 180.23204 * 23 22 21 49 49 H 1.08001 * 119.94164 * 179.76794 * 24 23 22 50 50 H 1.08007 * 120.02713 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5089 -0.7389 1.2391 6 6 4.0170 -1.6948 0.2461 7 6 3.8626 -1.1134 -1.1356 8 1 3.5104 -0.1000 -1.2588 9 6 4.1711 -1.8754 -2.2425 10 7 4.0359 -1.3682 -3.4484 11 14 4.7797 -3.6286 -2.0296 12 1 3.6210 -4.5572 -2.0214 13 1 5.6862 -3.9777 -3.1527 14 1 5.5159 -3.7443 -0.7451 15 6 4.0410 -1.0355 2.5758 16 6 3.8331 0.1752 3.4878 17 1 2.7684 0.3972 3.5598 18 8 4.5194 1.3045 2.9440 19 6 4.3849 -0.1348 4.8808 20 8 4.0874 0.9492 5.7630 21 6 4.5117 0.8326 7.0488 22 6 5.1953 -0.3047 7.4545 23 6 5.6293 -0.4190 8.7607 24 6 5.3741 0.5944 9.6666 25 6 4.6890 1.7263 9.2660 26 7 4.4181 2.8092 10.2379 27 8 3.8141 3.8064 9.8856 28 8 4.7991 2.7030 11.3899 29 6 4.2570 1.8475 7.9593 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.7463 1.9317 0.9287 35 1 3.1268 1.4436 -0.0833 36 1 1.6103 1.9798 -0.8454 37 1 1.6644 -1.7444 1.2567 38 1 1.6890 -0.1988 2.1392 39 1 5.0707 -1.8948 0.4404 40 1 3.4521 -2.6244 0.3144 41 1 4.2526 -1.9044 -4.2272 42 1 3.5190 -1.8974 2.9916 43 1 5.1059 -1.2565 2.5022 44 1 5.4735 1.1776 2.8512 45 1 3.9249 -1.0478 5.2589 46 1 5.4649 -0.2695 4.8220 47 1 5.3913 -1.0982 6.7485 48 1 6.1647 -1.3023 9.0761 49 1 5.7110 0.5014 10.6885 50 1 3.7214 2.7319 7.6469 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026711775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:57 Heat of formation + Delta-G solvation = -56.117304 kcal Electronic energy + Delta-G solvation = -31204.301642 eV Core-core repulsion = 26814.846719 eV Total energy + Delta-G solvation = -4389.454923 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.52477 -40.83713 -38.80698 -37.84735 -36.89007 -36.30918 -33.63756 -32.60651 -32.45340 -31.48502 -30.19132 -28.04401 -27.07262 -26.38212 -26.11379 -24.19229 -23.51810 -22.48325 -21.44184 -20.75194 -19.93310 -19.18069 -19.00332 -17.86725 -17.56950 -17.29704 -16.91145 -16.69447 -16.67883 -15.73871 -15.29116 -15.12730 -14.73867 -14.57792 -14.09778 -13.85888 -13.71519 -13.66298 -13.23085 -12.86671 -12.74301 -12.70754 -12.41622 -12.18885 -11.87216 -11.79304 -11.66706 -11.61022 -11.52591 -11.45179 -11.41264 -11.23247 -10.92740 -10.74187 -10.52019 -10.21882 -10.17164 -10.04738 -10.00465 -9.89010 -9.58367 -9.08321 -9.02922 -8.56637 -7.47099 -6.10306 -4.05604 -0.60013 0.48530 0.94589 0.96000 2.49423 2.77179 3.19681 3.27557 3.29110 3.87676 4.08047 4.13282 4.23329 4.28815 4.34625 4.36645 4.46685 4.64008 4.75661 4.89091 5.03055 5.09184 5.18750 5.20513 5.26561 5.37188 5.43562 5.54765 5.57942 5.68843 5.77562 5.91739 5.99440 6.02351 6.05714 6.21360 6.33190 6.53789 6.60846 6.64358 6.66548 6.69864 6.82371 6.96437 7.29300 7.34780 7.46191 7.60261 7.76380 7.79559 7.96858 8.59260 9.03309 9.50501 11.01096 Molecular weight = 352.19amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.001987 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.982898 B =14087.380279 C =15106.249903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.077 3.923 5 N -0.511 5.511 6 C 0.163 3.837 7 C -0.510 4.510 8 H 0.102 0.898 9 C 0.068 3.932 10 N -0.895 5.895 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.271 1.271 15 C 0.025 3.975 16 C 0.118 3.882 17 H 0.107 0.893 18 O -0.531 6.531 19 C 0.022 3.978 20 O -0.290 6.290 21 C 0.142 3.858 22 C -0.162 4.162 23 C -0.075 4.075 24 C -0.100 4.100 25 C -0.005 4.005 26 N 0.027 4.973 27 O -0.152 6.152 28 O -0.157 6.157 29 C -0.094 4.094 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.125 0.875 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.020 0.980 38 H 0.050 0.950 39 H 0.022 0.978 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.370 0.630 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.148 0.852 48 H 0.151 0.849 49 H 0.154 0.846 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 -0.372 23.019 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.179 4.179 4 C -0.051 4.051 5 N -0.234 5.234 6 C 0.037 3.963 7 C -0.548 4.548 8 H 0.120 0.880 9 C -0.134 4.134 10 N -0.534 5.534 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.196 1.196 15 C -0.105 4.105 16 C 0.058 3.942 17 H 0.125 0.875 18 O -0.334 6.334 19 C -0.053 4.053 20 O -0.202 6.202 21 C 0.095 3.905 22 C -0.181 4.181 23 C -0.093 4.093 24 C -0.119 4.119 25 C -0.088 4.088 26 N 0.548 4.452 27 O -0.370 6.370 28 O -0.373 6.373 29 C -0.114 4.114 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.143 0.857 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.003 0.997 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.217 0.783 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.165 0.835 48 H 0.168 0.832 49 H 0.172 0.828 50 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.579 -0.075 22.085 22.142 hybrid contribution 0.633 -2.192 0.570 2.351 sum 2.212 -2.266 22.656 22.876 Atomic orbital electron populations 1.21835 0.97358 1.00405 1.00484 1.21599 0.92746 0.97598 1.01120 1.21565 1.02912 0.94904 0.98556 1.22032 0.87521 0.97564 0.97979 1.61814 1.07402 1.51926 1.02304 1.20276 0.94360 0.89290 0.92394 1.21293 1.43708 1.02563 0.87232 0.87994 1.24921 0.95460 0.97648 0.95340 1.69877 1.48952 1.36953 0.97651 0.86952 0.79176 0.86244 0.77835 1.20512 1.21265 1.19611 1.22646 1.00946 0.94637 0.92236 1.21925 0.98226 0.87925 0.86137 0.87540 1.86691 1.23988 1.37367 1.85366 1.23932 1.01303 0.88764 0.91334 1.86244 1.73735 1.44218 1.16019 1.18674 0.93710 0.92870 0.85255 1.21815 0.99984 0.98151 0.98175 1.20998 0.98076 0.98445 0.91813 1.20967 0.97380 0.91269 1.02274 1.20720 1.07849 0.90540 0.89659 1.43555 0.98482 1.01585 1.01575 1.94575 1.39016 1.19637 1.83748 1.94541 1.54040 1.85700 1.03025 1.20112 1.01153 1.00624 0.89465 0.94206 0.93102 0.93743 0.85727 0.94973 0.90744 0.94757 0.96148 0.93191 0.96005 0.99707 0.92664 0.94918 0.90699 0.78309 0.90823 0.91061 0.83453 0.83179 0.82835 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 37.16 0.34 -1.95 16 2 C -0.11 -2.12 2.40 -90.63 -0.22 -2.33 16 3 C -0.12 -2.29 8.42 37.15 0.31 -1.98 16 4 C 0.08 1.34 4.25 -3.83 -0.02 1.32 16 5 N -0.51 -9.23 3.65 -236.08 -0.86 -10.09 16 6 C 0.16 3.53 3.83 -4.98 -0.02 3.51 16 7 C -0.51 -13.10 7.46 -34.44 -0.26 -13.36 16 8 H 0.10 2.81 4.78 -52.49 -0.25 2.56 16 9 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 10 N -0.90 -25.90 13.96 55.43 0.77 -25.13 16 11 Si 0.87 20.27 27.37 -169.99 -4.65 15.62 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.02 6.70 56.52 0.38 -5.65 16 15 C 0.02 0.33 4.63 -3.82 -0.02 0.32 16 16 C 0.12 1.38 3.26 -26.73 -0.09 1.29 16 17 H 0.11 1.37 6.55 -51.93 -0.34 1.03 16 18 O -0.53 -7.24 13.17 -40.09 -0.53 -7.76 16 19 C 0.02 0.19 4.37 37.16 0.16 0.35 16 20 O -0.29 -2.93 10.10 -24.30 -0.25 -3.18 16 21 C 0.14 1.23 6.69 -39.22 -0.26 0.97 16 22 C -0.16 -1.01 9.04 -39.43 -0.36 -1.36 16 23 C -0.07 -0.38 10.04 -39.60 -0.40 -0.78 16 24 C -0.10 -0.68 9.55 -39.56 -0.38 -1.06 16 25 C 0.00 -0.05 6.85 -79.98 -0.55 -0.59 16 26 N 0.03 0.31 4.45 33.95 0.15 0.46 16 27 O -0.15 -1.92 18.45 -29.46 -0.54 -2.46 16 28 O -0.16 -1.84 18.44 -29.46 -0.54 -2.38 16 29 C -0.09 -0.88 9.49 -39.44 -0.37 -1.25 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.13 2.87 4.83 -51.93 -0.25 2.62 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.58 6.76 -51.93 -0.35 1.22 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.36 7.78 -51.93 -0.40 -0.04 16 38 H 0.05 0.78 6.29 -51.93 -0.33 0.45 16 39 H 0.02 0.48 7.07 -51.93 -0.37 0.11 16 40 H -0.01 -0.33 6.90 -51.93 -0.36 -0.68 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 43 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 44 H 0.37 3.91 9.05 45.56 0.41 4.32 16 45 H 0.07 0.48 7.65 -51.93 -0.40 0.09 16 46 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 47 H 0.15 0.62 6.30 -52.49 -0.33 0.29 16 48 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 49 H 0.15 0.82 7.61 -52.49 -0.40 0.42 16 50 H 0.16 1.52 7.61 -52.48 -0.40 1.12 16 LS Contribution 405.11 15.07 6.10 6.10 Total: -1.00 -30.82 405.11 -9.23 -40.05 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.67 Total: 3.92 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.21 Total: -15.15 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.06 Total: -34.75 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.86 Total: -15.78 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.65 Total: 15.62 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.82 -9.23 -40.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026711775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.066 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds