Wall clock time and date at job start Tue Mar 31 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38365 * 119.84826 * 2 1 4 4 C 1.37958 * 120.14838 * 180.28172 * 3 2 1 5 5 C 1.39604 * 119.84499 * 359.97438 * 4 3 2 6 6 C 1.47773 * 120.14198 * 180.02562 * 5 4 3 7 7 N 1.30766 * 125.22500 * 180.02562 * 6 5 4 8 8 C 1.35930 * 108.61484 * 179.97438 * 7 6 5 9 9 C 1.43199 * 126.54331 * 179.97438 * 8 7 6 10 10 N 8.64866 * 165.12992 * 181.00758 * 2 1 3 11 11 C 1.38691 * 106.90457 * 359.97438 * 8 7 6 12 12 N 1.37753 * 126.65938 * 180.02562 * 11 8 7 13 13 C 1.46959 * 111.00274 * 303.80513 * 12 11 8 14 14 C 1.53047 * 109.36813 * 176.80529 * 13 12 11 15 15 N 1.46961 * 109.36025 * 58.39870 * 14 13 12 16 16 C 1.46896 * 110.99626 * 176.80971 * 15 14 13 17 17 C 1.50702 * 109.47316 * 58.98444 * 16 15 14 18 18 H 1.08006 * 119.99536 * 5.00827 * 17 16 15 19 19 C 1.37872 * 120.00177 * 185.00477 * 17 16 15 20 20 N 1.31515 * 120.00396 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99945 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47273 * 60.00213 * 21 19 17 23 23 H 1.48500 * 109.47136 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47325 * 300.00235 * 21 19 17 25 25 C 1.46955 * 110.88434 * 300.67931 * 15 14 13 26 26 C 1.46950 * 111.00211 * 180.02562 * 12 11 8 27 27 O 1.34563 * 106.68681 * 359.74284 * 11 8 7 28 28 C 1.39601 * 119.71009 * 0.02562 * 5 4 3 29 29 C 1.37953 * 119.85071 * 359.97438 * 28 5 4 30 30 H 1.09007 * 109.47386 * 269.72416 * 1 2 3 31 31 H 1.09000 * 109.47290 * 29.72484 * 1 2 3 32 32 H 1.09001 * 109.47085 * 149.72601 * 1 2 3 33 33 H 1.07994 * 119.92995 * 0.25766 * 3 2 1 34 34 H 1.07997 * 120.07721 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.48776 * 296.77770 * 13 12 11 36 36 H 1.09003 * 109.48605 * 56.83802 * 13 12 11 37 37 H 1.09003 * 109.49089 * 298.43979 * 14 13 12 38 38 H 1.09001 * 109.49158 * 178.36945 * 14 13 12 39 39 H 1.09005 * 109.47233 * 178.97841 * 16 15 14 40 40 H 1.08996 * 109.47602 * 298.98254 * 16 15 14 41 41 H 0.97000 * 120.00222 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.48983 * 299.35961 * 25 15 14 43 43 H 1.09000 * 109.49035 * 179.28474 * 25 15 14 44 44 H 1.09001 * 109.48936 * 303.15964 * 26 12 11 45 45 H 1.08996 * 109.49095 * 63.20204 * 26 12 11 46 46 H 1.08001 * 120.07385 * 180.02562 * 28 5 4 47 47 H 1.07996 * 119.92676 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5751 1.2073 -0.0059 5 6 4.2762 0.0001 -0.0113 6 6 5.7539 0.0002 -0.0170 7 7 6.5082 -1.0680 -0.0228 8 6 7.8108 -0.6793 -0.0274 9 6 8.9567 -1.5380 -0.0338 10 7 9.8660 -2.2191 -0.0390 11 6 7.8178 0.7076 -0.0246 12 7 8.9270 1.5244 -0.0281 13 6 9.8090 1.2198 1.1073 14 6 11.0643 2.0913 1.0230 15 7 10.6748 3.5083 1.0275 16 6 11.8577 4.3793 1.0239 17 6 12.6908 4.0900 -0.1982 18 1 12.3338 3.3936 -0.9426 19 6 13.9085 4.7144 -0.3661 20 7 14.3434 5.5622 0.5405 21 14 14.9413 4.3553 -1.8805 22 1 14.1778 4.7247 -3.0995 23 1 16.1962 5.1473 -1.8231 24 1 15.2714 2.9080 -1.9229 25 6 9.7930 3.8129 -0.1079 26 6 8.5376 2.9414 -0.0229 27 8 6.5308 1.1005 -0.0243 28 6 3.5752 -1.2071 -0.0112 29 6 2.1957 -1.2000 -0.0053 30 1 -0.3634 -0.0049 1.0277 31 1 -0.3634 0.8924 -0.5095 32 1 -0.3633 -0.8875 -0.5181 33 1 1.6520 2.1333 0.0042 34 1 4.1115 2.1447 -0.0054 35 1 9.2849 1.4263 2.0405 36 1 10.0935 0.1681 1.0748 37 1 11.6028 1.8652 0.1026 38 1 11.7065 1.8878 1.8798 39 1 11.5410 5.4222 1.0091 40 1 12.4497 4.1920 1.9197 41 1 15.2003 6.0012 0.4225 42 1 10.3170 3.6063 -1.0410 43 1 9.5083 4.8646 -0.0753 44 1 7.8952 3.1451 -0.8795 45 1 7.9990 3.1671 0.8974 46 1 4.1116 -2.1445 -0.0150 47 1 1.6521 -2.1332 -0.0049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027026734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:19 Heat of formation + Delta-G solvation = 95.413155 kcal Electronic energy + Delta-G solvation = -29861.770616 eV Core-core repulsion = 25818.488218 eV Total energy + Delta-G solvation = -4043.282398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.58215 -39.71629 -39.23521 -36.79060 -35.71564 -34.97239 -33.65294 -32.53465 -31.39266 -30.86752 -30.08238 -28.17846 -26.84567 -25.35871 -24.29940 -23.31421 -22.78004 -22.76215 -21.79722 -21.11198 -19.60080 -19.29256 -17.56243 -17.20004 -16.97279 -16.40449 -15.75735 -15.61232 -15.27098 -15.09490 -14.62818 -14.52171 -14.33834 -14.20234 -13.90678 -13.85936 -13.66685 -13.51620 -13.35733 -13.10948 -12.81063 -12.65831 -12.64121 -12.21075 -12.09484 -11.84534 -11.48522 -11.46383 -11.30498 -11.18246 -11.12377 -10.97984 -10.81674 -10.63172 -10.36642 -10.30389 -9.98623 -9.73670 -9.37016 -9.27224 -8.51803 -7.93932 -7.42825 -6.12341 -4.21920 0.30115 0.98615 1.01038 1.88715 2.03177 2.46646 3.18639 3.24680 3.28931 3.29877 3.32923 3.45263 3.54637 4.13718 4.34125 4.40359 4.46512 4.60856 4.64004 4.71746 4.79303 4.97784 4.99123 5.03694 5.13633 5.16476 5.20039 5.27866 5.34019 5.37907 5.45368 5.51486 5.53349 5.62856 5.68176 5.72826 5.88214 5.99877 6.04188 6.16443 6.29288 6.43526 6.46473 6.49933 6.53728 6.65646 7.06813 7.27967 7.39655 7.42468 7.75382 7.83359 8.02484 8.15043 8.86831 9.45968 10.93123 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.002160 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.513081 B =12962.155102 C =13923.312544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.070 4.070 3 C -0.121 4.121 4 C -0.084 4.084 5 C -0.017 4.017 6 C 0.229 3.771 7 N -0.418 5.418 8 C 0.001 3.999 9 C 0.305 3.695 10 N -0.398 5.398 11 C 0.251 3.749 12 N -0.424 5.424 13 C 0.055 3.945 14 C 0.063 3.937 15 N -0.543 5.543 16 C 0.188 3.812 17 C -0.555 4.555 18 H 0.058 0.942 19 C 0.067 3.933 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.060 3.940 26 C 0.047 3.953 27 O -0.204 6.204 28 C -0.068 4.068 29 C -0.122 4.122 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.031 0.969 40 H 0.038 0.962 41 H 0.264 0.736 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.140 0.860 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.364 -8.899 0.341 28.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.104 4.104 5 C -0.019 4.019 6 C 0.022 3.978 7 N -0.145 5.145 8 C -0.124 4.124 9 C -0.010 4.010 10 N -0.076 5.076 11 C 0.091 3.909 12 N -0.145 5.145 13 C -0.069 4.069 14 C -0.065 4.065 15 N -0.268 5.268 16 C 0.063 3.937 17 C -0.594 4.594 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.069 4.069 26 C -0.079 4.079 27 O -0.089 6.089 28 C -0.087 4.087 29 C -0.140 4.140 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.157 0.843 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.003 -10.351 0.415 27.991 hybrid contribution 0.849 0.880 -1.186 1.703 sum -25.155 -9.471 -0.770 26.890 Atomic orbital electron populations 1.20857 0.90844 1.03124 1.02665 1.20151 0.96444 0.93152 0.97336 1.20957 0.93482 0.97986 1.01472 1.21245 0.94439 0.97105 0.97605 1.17223 0.83379 0.94966 1.06289 1.23126 0.92536 0.77468 1.04683 1.70783 0.99432 1.28525 1.15787 1.16164 0.88214 0.86809 1.21236 1.23387 0.91424 0.92630 0.93594 1.81309 1.09436 1.07358 1.09494 1.21996 0.80608 0.91993 0.96257 1.59446 1.07346 1.06639 1.41038 1.22797 0.94085 1.01183 0.88799 1.21992 0.92886 0.88670 1.02999 1.62782 1.20308 1.03507 1.40192 1.19755 0.85250 0.91769 0.96919 1.21673 1.04167 1.26406 1.07179 0.92387 1.24944 0.97549 0.94768 0.96334 1.69922 1.20611 1.27890 1.34258 0.86696 0.79688 0.78506 0.83405 1.20207 1.21155 1.20173 1.22015 0.91515 0.98130 0.95247 1.22590 0.99567 0.83228 1.02509 1.84489 1.15797 1.37160 1.71407 1.21170 0.93892 0.97210 0.96411 1.20983 0.93464 0.97965 1.01598 0.90778 0.91247 0.91250 0.85203 0.84928 0.91776 0.89917 0.92334 0.89617 0.95083 0.94392 0.92632 0.92701 0.89882 0.89444 0.91820 0.84265 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.01 36.00 0.36 -0.10 16 2 C -0.07 -0.44 5.89 -104.53 -0.62 -1.05 16 3 C -0.12 -0.80 9.68 -39.64 -0.38 -1.19 16 4 C -0.08 -0.69 9.71 -39.17 -0.38 -1.07 16 5 C -0.02 -0.17 5.87 -104.98 -0.62 -0.78 16 6 C 0.23 2.77 7.86 -14.11 -0.11 2.66 16 7 N -0.42 -5.68 10.92 -8.84 -0.10 -5.78 16 8 C 0.00 0.02 6.84 -83.96 -0.57 -0.56 16 9 C 0.31 4.73 13.68 -22.47 -0.31 4.42 16 10 N -0.40 -6.67 18.54 41.84 0.78 -5.90 16 11 C 0.25 3.47 6.61 -14.72 -0.10 3.38 16 12 N -0.42 -6.25 4.74 -172.96 -0.82 -7.07 16 13 C 0.06 0.83 5.39 -3.77 -0.02 0.81 16 14 C 0.06 1.15 5.24 -3.77 -0.02 1.13 16 15 N -0.54 -10.58 4.92 -235.90 -1.16 -11.74 16 16 C 0.19 4.52 5.14 -4.98 -0.03 4.49 16 17 C -0.56 -14.51 7.66 -34.44 -0.26 -14.77 16 18 H 0.06 1.51 5.82 -52.48 -0.31 1.21 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 20 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 21 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.06 1.03 5.32 -3.76 -0.02 1.01 16 26 C 0.05 0.65 5.04 -3.77 -0.02 0.63 16 27 O -0.20 -2.54 9.67 3.91 0.04 -2.51 16 28 C -0.07 -0.57 9.68 -39.18 -0.38 -0.95 16 29 C -0.12 -0.82 9.68 -39.64 -0.38 -1.20 16 30 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.97 7.88 -52.49 -0.41 0.56 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.23 5.83 -51.93 -0.30 0.92 16 37 H 0.06 1.20 6.62 -51.93 -0.34 0.86 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.03 0.79 8.12 -51.93 -0.42 0.37 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.05 1.06 6.78 -51.93 -0.35 0.71 16 43 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 44 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.14 1.16 7.81 -52.49 -0.41 0.75 16 47 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -29.51 393.99 -9.89 -39.39 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.32 Total: -2.43 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.95 Total: -1.41 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.56 Total: -55.02 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.51 -9.89 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027026734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.808 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds