Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38365 * 119.84826 * 2 1 4 4 C 1.37958 * 120.14838 * 180.28172 * 3 2 1 5 5 C 1.39604 * 119.84499 * 359.97438 * 4 3 2 6 6 C 1.47773 * 120.14198 * 180.02562 * 5 4 3 7 7 N 1.30766 * 125.22500 * 180.02562 * 6 5 4 8 8 C 1.35930 * 108.61484 * 179.97438 * 7 6 5 9 9 C 1.43199 * 126.54331 * 179.97438 * 8 7 6 10 10 N 8.64866 * 165.12992 * 181.00758 * 2 1 3 11 11 C 1.38691 * 106.90457 * 359.97438 * 8 7 6 12 12 N 1.37753 * 126.65938 * 180.02562 * 11 8 7 13 13 C 1.46959 * 111.00274 * 303.80513 * 12 11 8 14 14 C 1.53047 * 109.36813 * 176.80529 * 13 12 11 15 15 N 1.46961 * 109.36025 * 58.39870 * 14 13 12 16 16 C 1.46896 * 110.99626 * 176.80971 * 15 14 13 17 17 C 1.50702 * 109.47316 * 58.98444 * 16 15 14 18 18 H 1.08006 * 119.99536 * 5.00827 * 17 16 15 19 19 C 1.37872 * 120.00177 * 185.00477 * 17 16 15 20 20 N 1.31515 * 120.00396 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99945 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47273 * 60.00213 * 21 19 17 23 23 H 1.48500 * 109.47136 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47325 * 300.00235 * 21 19 17 25 25 C 1.46955 * 110.88434 * 300.67931 * 15 14 13 26 26 C 1.46950 * 111.00211 * 180.02562 * 12 11 8 27 27 O 1.34563 * 106.68681 * 359.74284 * 11 8 7 28 28 C 1.39601 * 119.71009 * 0.02562 * 5 4 3 29 29 C 1.37953 * 119.85071 * 359.97438 * 28 5 4 30 30 H 1.09007 * 109.47386 * 269.72416 * 1 2 3 31 31 H 1.09000 * 109.47290 * 29.72484 * 1 2 3 32 32 H 1.09001 * 109.47085 * 149.72601 * 1 2 3 33 33 H 1.07994 * 119.92995 * 0.25766 * 3 2 1 34 34 H 1.07997 * 120.07721 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.48776 * 296.77770 * 13 12 11 36 36 H 1.09003 * 109.48605 * 56.83802 * 13 12 11 37 37 H 1.09003 * 109.49089 * 298.43979 * 14 13 12 38 38 H 1.09001 * 109.49158 * 178.36945 * 14 13 12 39 39 H 1.09005 * 109.47233 * 178.97841 * 16 15 14 40 40 H 1.08996 * 109.47602 * 298.98254 * 16 15 14 41 41 H 0.97000 * 120.00222 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.48983 * 299.35961 * 25 15 14 43 43 H 1.09000 * 109.49035 * 179.28474 * 25 15 14 44 44 H 1.09001 * 109.48936 * 303.15964 * 26 12 11 45 45 H 1.08996 * 109.49095 * 63.20204 * 26 12 11 46 46 H 1.08001 * 120.07385 * 180.02562 * 28 5 4 47 47 H 1.07996 * 119.92676 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2001 0.0000 4 6 3.5751 1.2073 -0.0059 5 6 4.2762 0.0001 -0.0113 6 6 5.7539 0.0002 -0.0170 7 7 6.5082 -1.0680 -0.0228 8 6 7.8108 -0.6793 -0.0274 9 6 8.9567 -1.5380 -0.0338 10 7 9.8660 -2.2191 -0.0390 11 6 7.8178 0.7076 -0.0246 12 7 8.9270 1.5244 -0.0281 13 6 9.8090 1.2198 1.1073 14 6 11.0643 2.0913 1.0230 15 7 10.6748 3.5083 1.0275 16 6 11.8577 4.3793 1.0239 17 6 12.6908 4.0900 -0.1982 18 1 12.3338 3.3936 -0.9426 19 6 13.9085 4.7144 -0.3661 20 7 14.3434 5.5622 0.5405 21 14 14.9413 4.3553 -1.8805 22 1 14.1778 4.7247 -3.0995 23 1 16.1962 5.1473 -1.8231 24 1 15.2714 2.9080 -1.9229 25 6 9.7930 3.8129 -0.1079 26 6 8.5376 2.9414 -0.0229 27 8 6.5308 1.1005 -0.0243 28 6 3.5752 -1.2071 -0.0112 29 6 2.1957 -1.2000 -0.0053 30 1 -0.3634 -0.0049 1.0277 31 1 -0.3634 0.8924 -0.5095 32 1 -0.3633 -0.8875 -0.5181 33 1 1.6520 2.1333 0.0042 34 1 4.1115 2.1447 -0.0054 35 1 9.2849 1.4263 2.0405 36 1 10.0935 0.1681 1.0748 37 1 11.6028 1.8652 0.1026 38 1 11.7065 1.8878 1.8798 39 1 11.5410 5.4222 1.0091 40 1 12.4497 4.1920 1.9197 41 1 15.2003 6.0012 0.4225 42 1 10.3170 3.6063 -1.0410 43 1 9.5083 4.8646 -0.0753 44 1 7.8952 3.1451 -0.8795 45 1 7.9990 3.1671 0.8974 46 1 4.1116 -2.1445 -0.0150 47 1 1.6521 -2.1332 -0.0049 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027026734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = 75.529693 kcal Electronic energy + Delta-G solvation = -29862.632827 eV Core-core repulsion = 25818.488218 eV Total energy + Delta-G solvation = -4044.144610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.60270 -40.70690 -40.11290 -38.02891 -37.18255 -36.03972 -34.63597 -34.14709 -32.19339 -31.92275 -31.20481 -29.48198 -27.79370 -26.95523 -25.40161 -24.52929 -23.98712 -23.43990 -23.15141 -21.90464 -21.03815 -20.27577 -18.83667 -18.39483 -18.12413 -17.73289 -16.89231 -16.73949 -16.15777 -16.04391 -15.99539 -15.95687 -15.60775 -15.06809 -15.00356 -14.89402 -14.64056 -14.54347 -14.38371 -14.24969 -14.05026 -13.91161 -13.59242 -13.23504 -13.05157 -12.95994 -12.93316 -12.62046 -12.48839 -12.45104 -12.35065 -12.33544 -12.13559 -11.95055 -11.88376 -11.83886 -11.58470 -11.40718 -10.62232 -10.02428 -9.91559 -9.16064 -8.88644 -8.18978 -6.36644 -0.50551 -0.00259 0.46572 0.85244 1.17023 1.27488 1.35503 1.36698 1.44162 2.14995 2.17653 2.34971 2.39323 2.83142 3.07463 3.14808 3.22135 3.49621 3.69898 3.83808 3.88896 3.98898 4.02305 4.08012 4.14363 4.23209 4.29219 4.42777 4.47026 4.50396 4.58231 4.61823 4.84592 4.87612 4.88323 4.94194 4.95997 5.03914 5.15181 5.15974 5.30599 5.31707 5.33671 5.36957 5.43641 5.49144 5.67411 5.72221 5.95708 5.98768 6.15257 6.20633 6.29177 6.35973 6.82085 7.34652 8.83881 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.002160 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.513081 B =12962.155102 C =13923.312544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.124 4.124 4 C -0.086 4.086 5 C -0.047 4.047 6 C 0.250 3.750 7 N -0.440 5.440 8 C -0.007 4.007 9 C 0.317 3.683 10 N -0.427 5.427 11 C 0.251 3.749 12 N -0.436 5.436 13 C 0.068 3.932 14 C 0.067 3.933 15 N -0.538 5.538 16 C 0.201 3.799 17 C -0.557 4.557 18 H 0.055 0.945 19 C 0.016 3.984 20 N -0.922 5.922 21 Si 0.950 3.050 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.276 1.276 25 C 0.061 3.939 26 C 0.058 3.942 27 O -0.197 6.197 28 C -0.073 4.073 29 C -0.125 4.125 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.031 0.969 38 H 0.082 0.918 39 H 0.014 0.986 40 H 0.012 0.988 41 H 0.265 0.735 42 H 0.031 0.969 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.135 0.865 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.695 -9.157 -0.274 32.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.105 4.105 5 C -0.049 4.049 6 C 0.042 3.958 7 N -0.167 5.167 8 C -0.132 4.132 9 C 0.002 3.998 10 N -0.106 5.106 11 C 0.091 3.909 12 N -0.157 5.157 13 C -0.056 4.056 14 C -0.062 4.062 15 N -0.262 5.262 16 C 0.075 3.925 17 C -0.596 4.596 18 H 0.073 0.927 19 C -0.184 4.184 20 N -0.561 5.561 21 Si 0.776 3.224 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.201 1.201 25 C -0.068 4.068 26 C -0.067 4.067 27 O -0.082 6.082 28 C -0.093 4.093 29 C -0.143 4.143 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.171 0.829 34 H 0.157 0.843 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.097 0.903 46 H 0.153 0.847 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -29.350 -10.630 -0.207 31.216 hybrid contribution 1.634 0.948 -0.974 2.125 sum -27.717 -9.682 -1.182 29.383 Atomic orbital electron populations 1.20934 0.88876 1.04166 1.03540 1.20536 0.97916 0.92795 0.95244 1.21272 0.92968 0.99244 1.00727 1.21407 0.95236 0.96722 0.97156 1.17392 0.82052 0.96229 1.09199 1.23713 0.93316 0.76868 1.01874 1.70813 0.99071 1.29159 1.17659 1.16159 0.88296 0.86912 1.21792 1.23566 0.91294 0.92159 0.92781 1.81307 1.10305 1.08288 1.10671 1.21648 0.80848 0.91420 0.96940 1.59376 1.08036 1.07167 1.41143 1.22579 0.92895 1.00287 0.89803 1.21923 0.94497 0.88325 1.01468 1.62694 1.18496 1.03577 1.41450 1.19412 0.86388 0.91698 0.95040 1.21921 1.04401 1.25712 1.07574 0.92684 1.25709 0.98871 0.94774 0.99005 1.70029 1.21108 1.28999 1.35962 0.85731 0.78255 0.78171 0.80264 1.19505 1.20687 1.20112 1.22041 0.92228 0.99504 0.93025 1.22520 0.97814 0.82070 1.04345 1.84498 1.15136 1.37196 1.71397 1.21263 0.94790 0.96690 0.96532 1.21262 0.92770 0.99306 1.00967 0.89824 0.90232 0.90297 0.82923 0.84276 0.90224 0.89766 0.95020 0.90007 0.96814 0.96968 0.92577 0.95077 0.89238 0.87119 0.90346 0.84732 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.01 71.23 0.71 0.23 16 2 C -0.06 -0.60 5.89 -19.81 -0.12 -0.72 16 3 C -0.12 -1.26 9.68 22.23 0.22 -1.05 16 4 C -0.09 -1.20 9.71 22.53 0.22 -0.98 16 5 C -0.05 -0.85 5.87 -20.10 -0.12 -0.97 16 6 C 0.25 5.71 7.86 87.38 0.69 6.40 16 7 N -0.44 -11.65 10.92 -296.03 -3.23 -14.88 16 8 C -0.01 -0.21 6.84 39.86 0.27 0.07 16 9 C 0.32 9.83 13.68 88.33 1.21 11.04 16 10 N -0.43 -14.47 18.54 19.00 0.35 -14.12 16 11 C 0.25 6.63 6.61 83.87 0.55 7.18 16 12 N -0.44 -12.40 4.74 -811.64 -3.84 -16.24 16 13 C 0.07 2.02 5.39 86.31 0.47 2.48 16 14 C 0.07 2.47 5.24 86.31 0.45 2.92 16 15 N -0.54 -21.20 4.92 -900.26 -4.43 -25.62 16 16 C 0.20 9.96 5.14 85.56 0.44 10.40 16 17 C -0.56 -29.77 7.66 25.60 0.20 -29.57 16 18 H 0.06 2.93 5.82 -2.91 -0.02 2.92 16 19 C 0.02 0.91 5.46 84.65 0.46 1.37 16 20 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 21 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 C 0.06 2.06 5.32 86.31 0.46 2.52 16 26 C 0.06 1.50 5.04 86.31 0.44 1.93 16 27 O -0.20 -4.56 9.67 -8.92 -0.09 -4.65 16 28 C -0.07 -1.14 9.68 22.53 0.22 -0.92 16 29 C -0.13 -1.36 9.68 22.23 0.22 -1.14 16 30 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.08 0.20 8.08 -2.39 -0.02 0.18 16 32 H 0.08 0.20 8.08 -2.39 -0.02 0.18 16 33 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.14 1.69 7.88 -2.91 -0.02 1.67 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.48 5.83 -2.39 -0.01 2.47 16 37 H 0.03 1.34 6.62 -2.39 -0.02 1.32 16 38 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.01 0.72 8.12 -2.38 -0.02 0.70 16 40 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 42 H 0.03 1.21 6.78 -2.39 -0.02 1.19 16 43 H 0.09 2.90 8.12 -2.39 -0.02 2.88 16 44 H 0.11 2.40 8.06 -2.39 -0.02 2.38 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.13 2.14 7.81 -2.91 -0.02 2.12 16 47 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -64.62 393.99 -0.95 -65.57 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.00 Total: 6.22 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.98 Total: 11.20 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -10.87 Total: -124.05 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.09 Total: -4.65 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -64.62 -0.95 -65.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027026734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.100 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds