Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38364 * 119.85004 * 2 1 4 4 C 1.37952 * 120.14850 * 179.72095 * 3 2 1 5 5 C 1.39598 * 119.84843 * 0.27871 * 4 3 2 6 6 C 1.47807 * 120.14541 * 180.02562 * 5 4 3 7 7 O 1.21558 * 119.99875 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00002 * 180.02562 * 6 5 4 9 9 C 1.38966 * 120.00176 * 180.02562 * 8 6 5 10 10 N 1.30191 * 126.16266 * 0.02562 * 9 8 6 11 11 N 1.26104 * 117.64968 * 179.97438 * 10 9 8 12 12 C 1.29394 * 117.93978 * 359.97438 * 11 10 9 13 13 S 1.76202 * 126.07295 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40393 * 203.51666 * 13 12 11 15 15 O 1.42103 * 106.39803 * 336.43984 * 13 12 11 16 16 C 1.76199 * 107.21614 * 89.97670 * 13 12 11 17 17 H 1.08007 * 119.99975 * 0.02562 * 16 13 12 18 18 C 1.37870 * 120.00319 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99816 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00371 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47106 * 60.00135 * 20 18 16 22 22 H 1.48499 * 109.47390 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47308 * 300.00313 * 20 18 16 24 24 S 1.76484 * 107.85780 * 359.77387 * 12 11 10 25 25 C 1.39602 * 119.71174 * 359.97438 * 5 4 3 26 26 C 1.37951 * 119.84358 * 359.97438 * 25 5 4 27 27 H 1.09001 * 109.47201 * 90.00305 * 1 2 3 28 28 H 1.09006 * 109.46438 * 210.00130 * 1 2 3 29 29 H 1.08994 * 109.47110 * 329.99727 * 1 2 3 30 30 H 1.08002 * 119.92862 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.07526 * 180.29834 * 4 3 2 32 32 H 0.97010 * 120.00191 * 359.97438 * 8 6 5 33 33 H 0.96997 * 120.00270 * 179.97438 * 19 18 16 34 34 H 1.07996 * 120.07853 * 179.97438 * 25 5 4 35 35 H 1.08004 * 119.92318 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5751 1.2073 0.0058 5 6 4.2762 0.0001 0.0058 6 6 5.7543 0.0002 0.0126 7 8 6.3620 1.0529 0.0177 8 7 6.4282 -1.1670 0.0120 9 6 7.8178 -1.1670 0.0190 10 7 8.5860 -0.1159 0.0268 11 7 9.8332 -0.3026 0.0327 12 6 10.2636 -1.5228 0.0313 13 16 11.9517 -2.0276 0.0380 14 8 11.9808 -3.3385 -0.5097 15 8 12.6967 -0.9437 -0.5002 16 6 12.4434 -2.1813 1.7230 17 1 11.7367 -1.9735 2.5128 18 6 13.7303 -2.5667 2.0332 19 7 14.5907 -2.8201 1.0714 20 14 14.2513 -2.7303 3.8196 21 1 13.4010 -3.7449 4.4923 22 1 15.6727 -3.1554 3.8837 23 1 14.0943 -1.4212 4.5029 24 16 8.8594 -2.5919 0.0272 25 6 3.5753 -1.2071 0.0005 26 6 2.1958 -1.2000 -0.0042 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6520 2.1333 0.0004 31 1 4.1115 2.1447 0.0107 32 1 5.9432 -2.0071 0.0076 33 1 15.4962 -3.0909 1.2896 34 1 4.1117 -2.1445 0.0000 35 1 1.6522 -2.1332 -0.0080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027664639.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = -20.224014 kcal Electronic energy + Delta-G solvation = -24677.255289 eV Core-core repulsion = 20701.937363 eV Total energy + Delta-G solvation = -3975.317925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 353.034 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26095 -40.37267 -38.95166 -35.60988 -35.42395 -34.21057 -33.46105 -33.22755 -31.55114 -30.55602 -28.20066 -26.36767 -26.13734 -23.74835 -23.20226 -21.90991 -20.27337 -20.00339 -18.82614 -18.09695 -17.85813 -16.73183 -16.11891 -16.00130 -15.88948 -15.62127 -15.24403 -14.94716 -14.77476 -14.24672 -14.16686 -13.96320 -13.93108 -13.82862 -13.32077 -12.78193 -12.53777 -12.14607 -12.13626 -11.65006 -11.55912 -11.44412 -11.24628 -11.17129 -10.67120 -10.56973 -10.54128 -10.44573 -10.04333 -9.84761 -9.65868 -9.52846 -9.33599 -9.27820 -9.04704 -8.84074 -6.83612 -5.48622 0.07424 0.46575 0.55772 0.85011 1.17810 1.75310 2.30675 2.43801 2.79727 3.06165 3.10175 3.16290 3.36018 3.91768 3.98948 4.18969 4.32061 4.41872 4.52256 4.67017 4.80316 4.83794 4.93090 5.05242 5.07305 5.10228 5.20052 5.44085 5.50530 5.57492 5.66743 5.73854 5.83907 6.00109 6.34699 6.56443 6.64310 7.18898 7.57880 7.79778 8.69219 8.72949 10.12006 Molecular weight = 353.03amu Principal moments of inertia in cm(-1) A = 0.025693 B = 0.002203 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.521162 B =12705.113396 C =12831.112017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.057 4.057 3 C -0.127 4.127 4 C -0.049 4.049 5 C -0.138 4.138 6 C 0.553 3.447 7 O -0.458 6.458 8 N -0.622 5.622 9 C 0.248 3.752 10 N -0.274 5.274 11 N -0.134 5.134 12 C -0.502 4.502 13 S 2.612 3.388 14 O -0.961 6.961 15 O -0.945 6.945 16 C -0.989 4.989 17 H 0.108 0.892 18 C 0.133 3.867 19 N -0.839 5.839 20 Si 0.931 3.069 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.261 1.261 24 S 0.166 5.834 25 C -0.082 4.082 26 C -0.127 4.127 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.424 0.576 33 H 0.296 0.704 34 H 0.127 0.873 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.462 -0.660 -0.093 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.067 4.067 5 C -0.141 4.141 6 C 0.338 3.662 7 O -0.326 6.326 8 N -0.275 5.275 9 C -0.120 4.120 10 N -0.121 5.121 11 N 0.028 4.972 12 C -0.856 4.856 13 S 2.782 3.218 14 O -0.958 6.958 15 O -0.942 6.942 16 C -1.125 5.125 17 H 0.126 0.874 18 C -0.086 4.086 19 N -0.468 5.468 20 Si 0.754 3.246 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.185 1.185 24 S 0.404 5.596 25 C -0.100 4.100 26 C -0.145 4.145 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.264 0.736 33 H 0.106 0.894 34 H 0.145 0.855 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.561 0.287 -0.960 26.580 hybrid contribution -0.537 -0.497 1.405 1.583 sum -27.098 -0.210 0.445 27.102 Atomic orbital electron populations 1.20896 0.90610 1.03347 1.02872 1.20234 0.96598 0.93130 0.95741 1.21085 0.93661 0.98117 1.01652 1.21319 0.93989 0.97678 0.93752 1.19659 0.90922 0.95105 1.08437 1.18647 0.87577 0.83119 0.76857 1.90965 1.68935 1.29770 1.42889 1.42843 1.00701 1.11369 1.72551 1.27397 0.90760 0.93811 1.00055 1.71769 0.96951 1.24217 1.19176 1.71113 1.03893 1.16762 1.05453 1.43669 1.29042 0.96683 1.16175 1.01814 0.68209 0.73446 0.78298 1.93405 1.83312 1.37947 1.81104 1.93397 1.63644 1.56039 1.81103 1.29843 1.05963 1.62418 1.14263 0.87362 1.24789 0.93991 0.88871 1.00986 1.69870 1.06759 1.36011 1.34174 0.86032 0.78020 0.79909 0.80684 1.18626 1.19825 1.18516 1.85591 0.97304 1.07326 1.69411 1.21298 0.94819 0.96650 0.97254 1.20995 0.93619 0.98101 1.01757 0.90534 0.91069 0.91049 0.84948 0.84149 0.73632 0.89351 0.85524 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 10.00 36.00 0.36 -0.05 16 2 C -0.06 -0.33 5.89 -104.53 -0.62 -0.95 16 3 C -0.13 -0.86 9.68 -39.64 -0.38 -1.24 16 4 C -0.05 -0.44 9.60 -39.18 -0.38 -0.81 16 5 C -0.14 -1.32 5.87 -104.97 -0.62 -1.94 16 6 C 0.55 7.34 7.73 -12.35 -0.10 7.25 16 7 O -0.46 -8.17 15.06 5.31 0.08 -8.09 16 8 N -0.62 -7.55 5.35 -12.48 -0.07 -7.61 16 9 C 0.25 4.20 8.42 -86.92 -0.73 3.47 16 10 N -0.27 -5.89 9.80 31.05 0.30 -5.58 16 11 N -0.13 -3.16 11.56 31.17 0.36 -2.80 16 12 C -0.50 -11.43 7.65 51.74 0.40 -11.03 16 13 S 2.61 69.89 4.83 -107.50 -0.52 69.37 16 14 O -0.96 -26.51 17.84 -57.17 -1.02 -27.53 16 15 O -0.94 -28.06 17.90 -57.17 -1.02 -29.08 16 16 C -0.99 -26.67 9.58 30.60 0.29 -26.38 16 17 H 0.11 2.66 7.81 -52.48 -0.41 2.25 16 18 C 0.13 3.57 5.46 -17.82 -0.10 3.48 16 19 N -0.84 -23.64 13.19 55.43 0.73 -22.91 16 20 Si 0.93 19.92 29.54 -169.99 -5.02 14.90 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 24 S 0.17 2.82 23.47 -107.50 -2.52 0.30 16 25 C -0.08 -0.54 9.54 -39.18 -0.37 -0.92 16 26 C -0.13 -0.72 9.68 -39.64 -0.38 -1.10 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.18 8.08 -51.93 -0.42 -0.24 16 29 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 30 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 31 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 32 H 0.42 3.07 6.85 -40.82 -0.28 2.79 16 33 H 0.30 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.13 0.50 6.41 -52.49 -0.34 0.16 16 35 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -37.67 346.42 -8.77 -46.44 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -2.67 Total: -2.39 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -2.62 Total: -30.22 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 1.33 Total: -38.91 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -1.96 Total: -64.71 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 72.71 SS G_CDS: -3.04 Total: 69.66 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.67 -8.77 -46.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027664639.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.216 kcal (2) G-P(sol) polarization free energy of solvation -37.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds