Wall clock time and date at job start Tue Mar 31 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38364 * 119.85004 * 2 1 4 4 C 1.37952 * 120.14850 * 179.72095 * 3 2 1 5 5 C 1.39598 * 119.84843 * 0.27871 * 4 3 2 6 6 C 1.47807 * 120.14541 * 180.02562 * 5 4 3 7 7 O 1.21558 * 119.99875 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00002 * 180.02562 * 6 5 4 9 9 C 1.38966 * 120.00176 * 180.02562 * 8 6 5 10 10 N 1.30191 * 126.16266 * 0.02562 * 9 8 6 11 11 N 1.26104 * 117.64968 * 179.97438 * 10 9 8 12 12 C 1.29394 * 117.93978 * 359.97438 * 11 10 9 13 13 S 1.76202 * 126.07295 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40393 * 203.51666 * 13 12 11 15 15 O 1.42103 * 106.39803 * 336.43984 * 13 12 11 16 16 C 1.76199 * 107.21614 * 89.97670 * 13 12 11 17 17 H 1.08007 * 119.99975 * 0.02562 * 16 13 12 18 18 C 1.37870 * 120.00319 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99816 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00371 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47106 * 60.00135 * 20 18 16 22 22 H 1.48499 * 109.47390 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47308 * 300.00313 * 20 18 16 24 24 S 1.76484 * 107.85780 * 359.77387 * 12 11 10 25 25 C 1.39602 * 119.71174 * 359.97438 * 5 4 3 26 26 C 1.37951 * 119.84358 * 359.97438 * 25 5 4 27 27 H 1.09001 * 109.47201 * 90.00305 * 1 2 3 28 28 H 1.09006 * 109.46438 * 210.00130 * 1 2 3 29 29 H 1.08994 * 109.47110 * 329.99727 * 1 2 3 30 30 H 1.08002 * 119.92862 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.07526 * 180.29834 * 4 3 2 32 32 H 0.97010 * 120.00191 * 359.97438 * 8 6 5 33 33 H 0.96997 * 120.00270 * 179.97438 * 19 18 16 34 34 H 1.07996 * 120.07853 * 179.97438 * 25 5 4 35 35 H 1.08004 * 119.92318 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5751 1.2073 0.0058 5 6 4.2762 0.0001 0.0058 6 6 5.7543 0.0002 0.0126 7 8 6.3620 1.0529 0.0177 8 7 6.4282 -1.1670 0.0120 9 6 7.8178 -1.1670 0.0190 10 7 8.5860 -0.1159 0.0268 11 7 9.8332 -0.3026 0.0327 12 6 10.2636 -1.5228 0.0313 13 16 11.9517 -2.0276 0.0380 14 8 11.9808 -3.3385 -0.5097 15 8 12.6967 -0.9437 -0.5002 16 6 12.4434 -2.1813 1.7230 17 1 11.7367 -1.9735 2.5128 18 6 13.7303 -2.5667 2.0332 19 7 14.5907 -2.8201 1.0714 20 14 14.2513 -2.7303 3.8196 21 1 13.4010 -3.7449 4.4923 22 1 15.6727 -3.1554 3.8837 23 1 14.0943 -1.4212 4.5029 24 16 8.8594 -2.5919 0.0272 25 6 3.5753 -1.2071 0.0005 26 6 2.1958 -1.2000 -0.0042 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6520 2.1333 0.0004 31 1 4.1115 2.1447 0.0107 32 1 5.9432 -2.0071 0.0076 33 1 15.4962 -3.0909 1.2896 34 1 4.1117 -2.1445 0.0000 35 1 1.6522 -2.1332 -0.0080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027664639.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:03 Heat of formation + Delta-G solvation = -49.937090 kcal Electronic energy + Delta-G solvation = -24678.543744 eV Core-core repulsion = 20701.937363 eV Total energy + Delta-G solvation = -3976.606381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 353.034 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.64698 -41.48310 -39.71630 -37.57567 -36.83808 -36.35972 -35.26397 -34.04371 -32.26716 -31.84610 -28.97759 -28.37470 -27.45223 -24.86179 -23.73446 -22.87932 -21.65716 -21.26466 -20.59533 -19.43200 -19.27778 -18.64472 -17.57081 -17.41117 -16.82877 -16.71381 -16.27342 -16.23990 -15.99044 -15.87018 -15.78046 -14.89616 -14.81400 -14.60009 -14.45097 -14.02617 -13.45451 -13.20026 -13.06155 -13.00306 -12.96419 -12.83952 -12.68410 -12.66893 -12.61804 -12.28674 -12.02833 -11.90652 -11.75232 -11.26589 -11.24459 -11.20579 -10.99074 -10.32810 -10.04572 -9.78075 -8.82783 -7.59657 -1.34334 -0.90212 -0.41018 -0.32336 -0.19320 0.33974 1.01026 1.30358 1.37777 1.40948 1.54600 1.61705 2.20756 2.53719 2.72810 2.90475 3.04556 3.32165 3.52834 3.55323 3.76279 3.90225 3.96133 4.29393 4.35937 4.44293 4.54347 4.68042 4.76263 4.86923 5.02589 5.17002 5.20151 5.21383 5.29545 5.54663 5.69716 5.78214 5.87126 6.54355 6.67770 7.14148 8.16345 Molecular weight = 353.03amu Principal moments of inertia in cm(-1) A = 0.025693 B = 0.002203 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.521162 B =12705.113396 C =12831.112017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.050 4.050 3 C -0.133 4.133 4 C -0.066 4.066 5 C -0.160 4.160 6 C 0.554 3.446 7 O -0.510 6.510 8 N -0.599 5.599 9 C 0.263 3.737 10 N -0.314 5.314 11 N -0.153 5.153 12 C -0.555 4.555 13 S 2.616 3.384 14 O -0.984 6.984 15 O -0.994 6.994 16 C -1.009 5.009 17 H 0.125 0.875 18 C 0.074 3.926 19 N -0.883 5.883 20 Si 0.998 3.002 21 H -0.242 1.242 22 H -0.257 1.257 23 H -0.255 1.255 24 S 0.263 5.737 25 C -0.074 4.074 26 C -0.127 4.127 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.449 0.551 33 H 0.305 0.695 34 H 0.157 0.843 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.223 -2.758 1.470 31.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.051 4.051 3 C -0.150 4.150 4 C -0.085 4.085 5 C -0.163 4.163 6 C 0.342 3.658 7 O -0.382 6.382 8 N -0.254 5.254 9 C -0.106 4.106 10 N -0.162 5.162 11 N 0.006 4.994 12 C -0.913 4.913 13 S 2.794 3.206 14 O -0.980 6.980 15 O -0.991 6.991 16 C -1.145 5.145 17 H 0.143 0.857 18 C -0.141 4.141 19 N -0.513 5.513 20 Si 0.815 3.185 21 H -0.165 1.165 22 H -0.181 1.181 23 H -0.179 1.179 24 S 0.501 5.499 25 C -0.092 4.092 26 C -0.144 4.144 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.141 0.859 32 H 0.294 0.706 33 H 0.116 0.884 34 H 0.174 0.826 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -30.339 -1.889 0.574 30.403 hybrid contribution 0.253 0.152 0.853 0.902 sum -30.086 -1.738 1.427 30.170 Atomic orbital electron populations 1.20979 0.88577 1.04421 1.03763 1.20647 0.98118 0.92790 0.93520 1.21297 0.92655 0.99653 1.01442 1.21350 0.95153 0.97084 0.94916 1.19467 0.88263 0.96748 1.11848 1.19387 0.89032 0.82321 0.75045 1.90948 1.70180 1.31677 1.45377 1.43010 0.98614 1.12812 1.70985 1.27656 0.92487 0.93492 0.96951 1.71734 0.96603 1.26080 1.21821 1.71138 1.05331 1.17712 1.05253 1.42547 1.29851 0.98678 1.20271 1.01028 0.68802 0.72431 0.78370 1.93359 1.84556 1.38503 1.81613 1.93328 1.66621 1.57125 1.82030 1.30177 1.07053 1.62706 1.14569 0.85674 1.26084 0.93764 0.87911 1.06318 1.69953 1.07659 1.36918 1.36815 0.85052 0.78744 0.80602 0.74107 1.16517 1.18093 1.17917 1.85053 0.93148 1.03943 1.67725 1.21615 0.95551 0.96418 0.95662 1.21407 0.93232 0.99339 1.00457 0.89547 0.89657 0.90433 0.83294 0.85920 0.70643 0.88394 0.82590 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.35 10.00 71.24 0.71 0.36 16 2 C -0.05 -0.42 5.89 -19.81 -0.12 -0.53 16 3 C -0.13 -1.55 9.68 22.23 0.22 -1.33 16 4 C -0.07 -1.17 9.60 22.53 0.22 -0.95 16 5 C -0.16 -2.86 5.87 -20.09 -0.12 -2.98 16 6 C 0.55 14.47 7.73 86.78 0.67 15.14 16 7 O -0.51 -18.89 15.06 -3.90 -0.06 -18.95 16 8 N -0.60 -13.44 5.35 -311.68 -1.67 -15.10 16 9 C 0.26 8.66 8.42 179.06 1.51 10.17 16 10 N -0.31 -13.74 9.80 -55.69 -0.55 -14.28 16 11 N -0.15 -7.50 11.56 -55.30 -0.64 -8.14 16 12 C -0.56 -25.91 7.65 130.60 1.00 -24.91 16 13 S 2.62 145.49 4.83 -56.49 -0.27 145.22 16 14 O -0.98 -55.99 17.84 -128.00 -2.28 -58.27 16 15 O -0.99 -62.46 17.90 -128.00 -2.29 -64.75 16 16 C -1.01 -55.36 9.58 67.73 0.65 -54.71 16 17 H 0.13 6.18 7.81 -2.91 -0.02 6.16 16 18 C 0.07 3.99 5.46 84.65 0.46 4.45 16 19 N -0.88 -50.89 13.19 21.44 0.28 -50.61 16 20 Si 1.00 39.95 29.54 68.60 2.03 41.97 16 21 H -0.24 -8.84 7.11 99.48 0.71 -8.14 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 S 0.26 8.58 23.47 -56.49 -1.33 7.25 16 25 C -0.07 -0.73 9.54 22.53 0.21 -0.52 16 26 C -0.13 -0.90 9.68 22.23 0.22 -0.68 16 27 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.08 0.05 8.08 -2.38 -0.02 0.03 16 29 H 0.08 0.17 8.08 -2.39 -0.02 0.15 16 30 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.12 2.51 7.65 -2.91 -0.02 2.49 16 32 H 0.45 4.93 6.85 -92.70 -0.64 4.29 16 33 H 0.31 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.16 0.47 6.41 -2.91 -0.02 0.46 16 35 H 0.16 0.17 8.06 -2.91 -0.02 0.15 16 Total: -1.00 -87.86 346.42 -0.60 -88.46 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 0.55 Total: 3.70 kcal Atomic # 6 Polarization: -62.12 SS G_CDS: 5.63 Total: -56.49 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -2.57 Total: -88.13 kcal Atomic # 8 Polarization: -137.34 SS G_CDS: -4.63 Total: -141.98 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: 154.07 SS G_CDS: -1.60 Total: 152.47 kcal Total: -87.86 -0.60 -88.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027664639.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.525 kcal (2) G-P(sol) polarization free energy of solvation -87.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds