Wall clock time and date at job start Tue Mar 31 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46193 * 2 1 4 4 C 1.52991 * 109.45433 * 240.02853 * 2 1 3 5 5 C 1.53033 * 109.51317 * 179.97438 * 4 2 1 6 6 C 1.52991 * 109.36979 * 59.83609 * 5 4 2 7 7 H 1.09003 * 109.01051 * 59.88487 * 6 5 4 8 8 C 1.52438 * 109.69192 * 300.17683 * 6 5 4 9 9 H 1.08999 * 107.93190 * 301.64484 * 8 6 5 10 10 C 1.53010 * 109.67692 * 59.89594 * 8 6 5 11 11 C 1.49934 * 111.76651 * 182.16674 * 8 6 5 12 12 S 1.76996 * 125.80603 * 200.16027 * 11 8 6 13 13 C 1.72078 * 94.86057 * 180.22299 * 12 11 8 14 14 O 1.21844 * 127.03295 * 180.02562 * 13 12 11 15 15 N 1.33686 * 105.92791 * 359.97438 * 13 12 11 16 16 C 1.46494 * 120.84961 * 179.77683 * 15 13 12 17 17 C 1.50696 * 109.47221 * 90.02278 * 16 15 13 18 18 H 1.08002 * 120.00355 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00030 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99861 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00108 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47192 * 89.99750 * 21 19 17 23 23 H 1.48498 * 109.47336 * 209.99652 * 21 19 17 24 24 H 1.48503 * 109.47187 * 329.99698 * 21 19 17 25 25 C 1.34193 * 128.06522 * 20.18580 * 11 8 6 26 26 S 1.77966 * 121.90821 * 359.37086 * 25 11 8 27 27 C 1.53208 * 109.48945 * 179.47636 * 6 5 4 28 28 C 1.53007 * 109.71164 * 73.23269 * 27 6 5 29 29 C 1.52998 * 109.76646 * 312.59511 * 27 6 5 30 30 H 1.08993 * 109.47401 * 300.00414 * 1 2 3 31 31 H 1.09001 * 109.47113 * 60.00590 * 1 2 3 32 32 H 1.09002 * 109.46913 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46359 * 299.97689 * 4 2 1 34 34 H 1.08993 * 109.46697 * 59.95146 * 4 2 1 35 35 H 1.08999 * 109.48544 * 299.86955 * 5 4 2 36 36 H 1.08998 * 109.51080 * 179.81910 * 5 4 2 37 37 H 1.09000 * 109.48261 * 180.24145 * 10 8 6 38 38 H 1.09000 * 109.49927 * 60.19254 * 10 8 6 39 39 H 1.09001 * 109.47215 * 210.02494 * 16 15 13 40 40 H 1.09004 * 109.47113 * 330.02426 * 16 15 13 41 41 H 0.97004 * 120.00183 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47061 * 178.71259 * 28 27 6 43 43 H 1.09001 * 109.46941 * 298.70833 * 28 27 6 44 44 H 1.08999 * 109.46922 * 58.71506 * 28 27 6 45 45 H 1.09004 * 109.46981 * 301.25685 * 29 27 6 46 46 H 1.09003 * 109.47269 * 61.24980 * 29 27 6 47 47 H 1.09000 * 109.47618 * 181.25715 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7207 -1.2497 5 6 3.5699 -0.7209 -1.2513 6 6 4.0785 -1.4395 -0.0001 7 1 3.7083 -2.4647 -0.0043 8 6 3.5698 -0.7237 1.2459 9 1 3.9207 0.3075 1.2073 10 6 2.0397 -0.7210 1.2499 11 6 4.0847 -1.3602 2.5020 12 16 3.3769 -1.1885 4.1151 13 6 4.5432 -2.1864 4.8930 14 8 4.5939 -2.4697 6.0770 15 7 5.3816 -2.5881 3.9323 16 6 6.5168 -3.4605 4.2424 17 6 6.0927 -4.9010 4.1155 18 1 5.0790 -5.1426 3.8318 19 6 6.9992 -5.9107 4.3606 20 7 6.6292 -7.1678 4.2494 21 14 8.7526 -5.4930 4.8506 22 1 8.8425 -5.3913 6.3295 23 1 9.6680 -6.5596 4.3713 24 1 9.1415 -4.1961 4.2407 25 6 5.1519 -2.1608 2.6464 26 16 6.1722 -2.6267 1.2646 27 6 5.6106 -1.4528 -0.0056 28 6 6.1399 -0.0533 0.3145 29 6 6.1193 -1.8955 -1.3789 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6763 -1.7484 -1.2497 34 1 1.6753 -0.2068 -2.1392 35 1 3.9336 0.3066 -1.2537 36 1 3.9328 -1.2371 -2.1400 37 1 1.6794 -0.2048 2.1397 38 1 1.6740 -1.7478 1.2519 39 1 7.3309 -3.2588 3.5462 40 1 6.8542 -3.2695 5.2611 41 1 7.2667 -7.8782 4.4222 42 1 7.2296 -0.0723 0.3321 43 1 5.8011 0.6467 -0.4492 44 1 5.7663 0.2625 1.2885 45 1 5.7309 -2.8880 -1.6076 46 1 5.7804 -1.1893 -2.1370 47 1 7.2088 -1.9248 -1.3708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028295114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:31 Heat of formation + Delta-G solvation = -28.237840 kcal Electronic energy + Delta-G solvation = -28395.321493 eV Core-core repulsion = 24794.862594 eV Total energy + Delta-G solvation = -3600.458898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 353.122 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38790 -39.70814 -36.62895 -35.91120 -33.44863 -32.52035 -31.05367 -29.92393 -27.85743 -27.40526 -26.37527 -24.70772 -23.35164 -23.15903 -21.15885 -20.39710 -19.73503 -19.17591 -18.36025 -17.23140 -16.27535 -16.12689 -15.45638 -15.36852 -15.06419 -14.65839 -14.57216 -14.38286 -14.17634 -13.94312 -13.61893 -13.22140 -12.99676 -12.76287 -12.58386 -12.50183 -12.23736 -12.09869 -12.08270 -11.97888 -11.70657 -11.60751 -11.47341 -11.24995 -11.06665 -10.91276 -10.86418 -10.72773 -10.55850 -10.52874 -10.23270 -10.00404 -9.73549 -9.49427 -9.35448 -8.79812 -8.73436 -8.22225 -6.95422 -6.22171 -4.24788 1.29486 1.47100 1.62955 2.11658 2.73599 2.81356 3.19785 3.25445 3.27432 3.57987 4.26746 4.27539 4.40174 4.50464 4.67620 4.75597 4.94174 4.99354 5.07649 5.10251 5.20449 5.27184 5.29827 5.35931 5.44876 5.52657 5.53975 5.56761 5.60379 5.63797 5.68879 5.76998 5.79829 5.85644 5.93986 6.01706 6.03571 6.06783 6.11499 6.16831 6.21054 6.29191 6.38345 6.46958 6.64556 7.31292 7.41072 7.95249 8.29630 8.78514 9.33575 10.90358 Molecular weight = 353.12amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004335 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.404253 B = 6457.014809 C = 7622.316213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.073 4.073 7 H 0.087 0.913 8 C 0.011 3.989 9 H 0.083 0.917 10 C -0.105 4.105 11 C -0.236 4.236 12 S -0.017 6.017 13 C 0.494 3.506 14 O -0.472 6.472 15 N -0.496 5.496 16 C 0.199 3.801 17 C -0.537 4.537 18 H 0.079 0.921 19 C 0.083 3.917 20 N -0.885 5.885 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.263 1.263 25 C 0.134 3.866 26 S -0.019 6.019 27 C -0.058 4.058 28 C -0.144 4.144 29 C -0.129 4.129 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.268 0.732 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 17.091 -15.585 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.094 4.094 7 H 0.106 0.894 8 C -0.010 4.010 9 H 0.100 0.900 10 C -0.143 4.143 11 C -0.366 4.366 12 S 0.225 5.775 13 C 0.173 3.827 14 O -0.351 6.351 15 N -0.214 5.214 16 C 0.076 3.924 17 C -0.575 4.575 18 H 0.097 0.903 19 C -0.121 4.121 20 N -0.522 5.522 21 Si 0.695 3.305 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.091 4.091 26 S 0.222 5.778 27 C -0.168 4.168 28 C -0.202 4.202 29 C -0.188 4.188 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.028 16.423 -14.355 22.630 hybrid contribution 1.139 0.023 0.287 1.174 sum -4.890 16.446 -14.069 22.188 Atomic orbital electron populations 1.21819 0.95186 1.01966 1.01491 1.21137 0.95483 0.99504 0.94739 0.91227 1.21628 0.95236 1.01044 0.97376 1.21694 0.95532 1.00691 0.96929 1.21323 0.91904 1.01539 0.94681 0.89418 1.19133 0.95515 0.98707 0.87624 0.89951 1.21655 0.93315 1.01686 0.97674 1.23302 1.01724 1.13513 0.98078 1.84421 1.35886 1.56023 1.01136 1.21082 0.86572 0.86009 0.89000 1.90915 1.71563 1.59957 1.12715 1.46023 1.28088 1.43377 1.03936 1.20227 0.83347 0.90783 0.98028 1.21025 1.00087 0.87121 1.49231 0.90291 1.24747 0.98485 0.94685 0.94188 1.69870 1.35523 0.98902 1.47936 0.86952 0.84837 0.78926 0.79816 1.19616 1.20449 1.18752 1.21505 0.99133 0.98997 0.89467 1.86498 1.47344 1.43526 1.00452 1.23227 0.98293 0.97914 0.97414 1.22197 1.01705 0.93895 1.02416 1.21719 1.01683 1.02414 0.92945 0.92663 0.92853 0.92570 0.91669 0.91917 0.91564 0.90872 0.91351 0.91131 0.93233 0.93490 0.92191 0.91525 0.91509 0.91551 0.91176 0.90369 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.09 -0.73 2.72 -90.61 -0.25 -0.98 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.86 5.20 -26.72 -0.14 -1.00 16 5 C -0.11 -0.83 4.38 -26.72 -0.12 -0.94 16 6 C -0.07 -0.77 1.32 -90.80 -0.12 -0.89 16 7 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 8 C 0.01 0.12 1.48 -92.42 -0.14 -0.01 16 9 H 0.08 0.89 6.39 -51.93 -0.33 0.56 16 10 C -0.11 -1.12 4.24 -26.71 -0.11 -1.23 16 11 C -0.24 -3.77 5.40 -36.10 -0.19 -3.96 16 12 S -0.02 -0.29 21.93 -107.50 -2.36 -2.65 16 13 C 0.49 11.21 8.24 53.57 0.44 11.65 16 14 O -0.47 -12.11 17.49 5.06 0.09 -12.02 16 15 N -0.50 -11.17 2.59 -121.11 -0.31 -11.48 16 16 C 0.20 4.95 4.06 -5.20 -0.02 4.93 16 17 C -0.54 -15.40 9.94 -34.44 -0.34 -15.75 16 18 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 19 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 20 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 21 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 25 C 0.13 2.52 6.73 -16.46 -0.11 2.41 16 26 S -0.02 -0.32 19.73 -107.50 -2.12 -2.44 16 27 C -0.06 -0.64 0.66 -90.51 -0.06 -0.70 16 28 C -0.14 -1.41 7.60 37.16 0.28 -1.13 16 29 C -0.13 -1.15 7.74 37.16 0.29 -0.86 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.45 6.97 -51.93 -0.36 0.09 16 36 H 0.07 0.49 6.34 -51.93 -0.33 0.16 16 37 H 0.07 0.75 7.51 -51.93 -0.39 0.36 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.05 1.18 6.08 -51.93 -0.32 0.87 16 40 H 0.05 1.21 7.19 -51.93 -0.37 0.84 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.50 6.99 -51.93 -0.36 0.14 16 44 H 0.07 0.75 5.78 -51.93 -0.30 0.45 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.51 6.42 -51.93 -0.33 0.18 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -32.15 373.80 -10.65 -42.79 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.33 Total: -3.23 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -0.34 Total: -6.92 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.46 Total: -37.59 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -4.48 Total: -5.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.15 -10.65 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028295114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.557 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds