Wall clock time and date at job start Tue Mar 31 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21252 * 120.00195 * 2 1 4 4 C 1.47169 * 119.99932 * 179.97438 * 2 1 3 5 5 C 1.39874 * 120.16772 * 0.02562 * 4 2 1 6 6 C 1.37871 * 119.82366 * 180.02562 * 5 4 2 7 7 C 1.38426 * 120.17285 * 0.02562 * 6 5 4 8 8 C 1.38390 * 120.34414 * 359.95994 * 7 6 5 9 9 S 1.76202 * 119.90931 * 179.97438 * 8 7 6 10 10 O 1.42095 * 106.40377 * 336.46251 * 9 8 7 11 11 O 1.42107 * 106.40109 * 203.53727 * 9 8 7 12 12 N 1.65599 * 107.21592 * 90.00288 * 9 8 7 13 13 C 1.47087 * 120.88240 * 89.99845 * 12 9 8 14 14 C 1.53233 * 108.51817 * 231.20548 * 13 12 9 15 15 N 1.46905 * 109.34461 * 306.16600 * 14 13 12 16 16 C 1.46895 * 110.99974 * 187.25362 * 15 14 13 17 17 C 1.50702 * 109.46770 * 170.00187 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72214 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.46900 * 111.26196 * 63.11001 * 15 14 13 26 26 C 1.47077 * 120.88269 * 270.02142 * 12 9 8 27 27 C 1.37900 * 120.17690 * 0.27382 * 8 7 6 28 28 H 1.09002 * 109.47309 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47032 * 300.00591 * 1 2 3 30 30 H 1.09007 * 109.46658 * 60.00007 * 1 2 3 31 31 H 1.07998 * 120.09118 * 359.97438 * 5 4 2 32 32 H 1.07998 * 119.91428 * 180.02562 * 6 5 4 33 33 H 1.07999 * 119.82893 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.62348 * 111.49679 * 13 12 9 35 35 H 1.08994 * 109.62751 * 350.91870 * 13 12 9 36 36 H 1.09003 * 109.49046 * 186.21182 * 14 13 12 37 37 H 1.09003 * 109.51854 * 66.14457 * 14 13 12 38 38 H 1.09004 * 109.47258 * 50.00511 * 16 15 14 39 39 H 1.08994 * 109.47601 * 290.00103 * 16 15 14 40 40 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.49699 * 56.85399 * 25 15 14 42 42 H 1.09003 * 109.48977 * 176.93746 * 25 15 14 43 43 H 1.09005 * 109.63045 * 248.50452 * 26 12 9 44 44 H 1.08998 * 109.62824 * 9.08176 * 26 12 9 45 45 H 1.08001 * 120.09557 * 179.74160 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5470 -2.4879 0.0006 6 6 2.2435 -3.6778 0.0016 7 6 3.6278 -3.6736 0.0032 8 6 4.3234 -2.4772 0.0030 9 16 6.0854 -2.4854 0.0057 10 8 6.4800 -3.7363 0.5521 11 8 6.4915 -1.2368 0.5493 12 7 6.5779 -2.4894 -1.5753 13 6 6.8083 -1.2289 -2.2975 14 6 6.0336 -1.2763 -3.6187 15 7 6.4039 -2.4915 -4.3566 16 6 5.8153 -2.4900 -5.7024 17 6 6.4074 -3.6156 -6.5108 18 1 7.1467 -4.2672 -6.0688 19 6 6.0007 -3.8176 -7.8127 20 7 5.1002 -3.0245 -8.3508 21 14 6.7291 -5.2175 -8.8122 22 1 7.7137 -5.9579 -7.9829 23 1 5.6450 -6.1404 -9.2347 24 1 7.4072 -4.6676 -10.0135 25 6 6.0220 -3.7014 -3.6162 26 6 6.7962 -3.7534 -2.2949 27 6 3.6412 -1.2788 0.0068 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.4671 -2.4928 0.0006 32 1 1.7078 -4.6155 0.0012 33 1 4.1678 -4.6089 0.0045 34 1 7.8728 -1.1129 -2.5011 35 1 6.4545 -0.3920 -1.6954 36 1 6.2798 -0.3987 -4.2165 37 1 4.9632 -1.2877 -3.4131 38 1 6.0292 -1.5397 -6.1916 39 1 4.7363 -2.6252 -5.6273 40 1 4.8144 -3.1663 -9.2669 41 1 4.9518 -3.6792 -3.4101 42 1 6.2598 -4.5826 -4.2121 43 1 7.8596 -3.8801 -2.4983 44 1 6.4345 -4.5856 -1.6910 45 1 4.1854 -0.3459 0.0107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029599194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:23 Heat of formation + Delta-G solvation = -65.956811 kcal Electronic energy + Delta-G solvation = -29615.205926 eV Core-core repulsion = 25532.244107 eV Total energy + Delta-G solvation = -4082.961819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36172 -38.52007 -38.40799 -37.38020 -35.94249 -34.46177 -32.66903 -32.35791 -31.57289 -30.83262 -29.77767 -27.88591 -25.14457 -24.42481 -23.42727 -23.32617 -21.83283 -20.85899 -20.06477 -18.67912 -18.17345 -17.51335 -16.49556 -16.43940 -16.34599 -15.90116 -15.62151 -15.35788 -14.88223 -14.65408 -14.48336 -14.26160 -14.23820 -14.17781 -13.82921 -13.54302 -13.29683 -13.08123 -12.55677 -12.48147 -12.39076 -12.29736 -12.17756 -12.07486 -11.96671 -11.83976 -11.31128 -11.17272 -11.09493 -10.86353 -10.79701 -10.63508 -10.44546 -10.11711 -9.94625 -9.79776 -9.45480 -9.33706 -8.89506 -8.50138 -7.34612 -6.09278 -4.11039 0.07867 0.30219 0.62884 1.93717 2.81008 3.22247 3.26575 3.34677 3.38829 3.57977 3.66056 4.14190 4.33829 4.36366 4.43677 4.50370 4.69263 4.72543 4.87694 4.90801 4.98867 5.01832 5.24797 5.26309 5.35237 5.38412 5.45290 5.49730 5.60737 5.67392 5.68341 5.72037 5.74922 5.79944 5.99655 6.13774 6.27811 6.31992 6.41914 6.44805 6.68148 7.13711 7.19886 7.24835 7.72220 7.99396 8.09826 8.45252 8.96793 9.53756 11.01536 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003302 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.798321 B = 8476.686335 C = 9580.264751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.395 3.605 3 O -0.452 6.452 4 C -0.194 4.194 5 C -0.024 4.024 6 C -0.150 4.150 7 C 0.012 3.988 8 C -0.688 4.688 9 S 2.690 3.310 10 O -0.955 6.955 11 O -0.954 6.954 12 N -0.992 5.992 13 C 0.127 3.873 14 C 0.040 3.960 15 N -0.532 5.532 16 C 0.193 3.807 17 C -0.509 4.509 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.050 3.950 26 C 0.124 3.876 27 C 0.038 3.962 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.025 0.975 38 H 0.032 0.968 39 H -0.010 1.010 40 H 0.261 0.739 41 H 0.023 0.977 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 0.478 18.476 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.273 3.727 3 O -0.327 6.327 4 C -0.195 4.195 5 C -0.042 4.042 6 C -0.169 4.169 7 C -0.007 4.007 8 C -0.773 4.773 9 S 2.780 3.220 10 O -0.945 6.945 11 O -0.945 6.945 12 N -0.832 5.832 13 C 0.001 3.999 14 C -0.090 4.090 15 N -0.257 5.257 16 C 0.069 3.931 17 C -0.547 4.547 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.080 4.080 26 C -0.001 4.001 27 C 0.019 3.981 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.008 0.992 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.384 1.065 18.990 20.403 hybrid contribution -1.525 -0.825 -1.036 2.020 sum -8.910 0.240 17.955 20.045 Atomic orbital electron populations 1.22245 0.93371 1.04850 1.05324 1.22470 0.91809 0.87347 0.71089 1.90577 1.71992 1.34100 1.36051 1.20675 0.94530 0.95413 1.08923 1.21835 1.00549 0.91559 0.90291 1.21315 0.94256 0.98723 1.02581 1.21240 0.94978 0.96817 0.87673 1.31292 1.28517 0.99136 1.18316 1.02118 0.73532 0.73622 0.72750 1.93571 1.80954 1.43709 1.76289 1.93584 1.80643 1.43883 1.76365 1.57705 1.81220 1.13536 1.30729 1.21643 1.01958 0.83412 0.92840 1.22402 0.96574 0.95770 0.94247 1.62004 1.60201 0.99484 1.04029 1.19733 0.92570 0.98235 0.82608 1.21185 1.23132 1.13572 0.96824 0.91678 1.24996 0.95146 0.96662 0.97792 1.69970 1.31081 1.38169 1.14514 0.86447 0.78932 0.81957 0.80098 1.19586 1.21168 1.21005 1.22343 0.95954 0.96338 0.93323 1.21737 1.02223 0.83013 0.93152 1.21177 0.93687 0.97233 0.86052 0.89844 0.88529 0.88360 0.84004 0.84127 0.83637 0.89823 0.89717 0.89982 0.95684 0.95029 0.99204 0.92949 0.95876 0.88430 0.89875 0.89761 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 10.19 36.01 0.37 -0.84 16 2 C 0.40 4.12 7.23 -30.68 -0.22 3.90 16 3 O -0.45 -6.37 17.09 5.58 0.10 -6.28 16 4 C -0.19 -2.08 5.87 -105.06 -0.62 -2.69 16 5 C -0.02 -0.20 9.45 -39.10 -0.37 -0.56 16 6 C -0.15 -1.26 10.03 -39.65 -0.40 -1.66 16 7 C 0.01 0.13 9.52 -39.46 -0.38 -0.25 16 8 C -0.69 -8.45 5.97 -39.65 -0.24 -8.69 16 9 S 2.69 36.82 5.69 -107.50 -0.61 36.20 16 10 O -0.95 -14.32 16.05 -57.17 -0.92 -15.24 16 11 O -0.95 -14.97 16.04 -57.17 -0.92 -15.89 16 12 N -0.99 -13.89 3.33 -113.24 -0.38 -14.26 16 13 C 0.13 1.79 6.53 -3.60 -0.02 1.77 16 14 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 15 N -0.53 -10.66 4.62 -235.76 -1.09 -11.75 16 16 C 0.19 4.79 4.72 -4.98 -0.02 4.77 16 17 C -0.51 -13.60 8.41 -34.44 -0.29 -13.89 16 18 H 0.07 1.71 7.13 -52.49 -0.37 1.34 16 19 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.05 0.88 5.46 -3.70 -0.02 0.86 16 26 C 0.12 1.76 6.53 -3.60 -0.02 1.74 16 27 C 0.04 0.48 9.07 -39.11 -0.35 0.12 16 28 H 0.08 0.31 5.61 -51.93 -0.29 0.01 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.14 0.63 5.93 -52.49 -0.31 0.32 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.15 1.30 7.60 -52.49 -0.40 0.90 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.06 7.22 -51.93 -0.37 0.69 16 36 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.02 7.22 -51.93 -0.37 0.64 16 45 H 0.15 1.94 7.19 -52.49 -0.38 1.56 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -34.65 380.88 -11.26 -45.91 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.19 Total: -1.82 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.70 Total: -13.34 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.73 Total: -51.20 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.74 Total: -37.40 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 36.82 SS G_CDS: -0.61 Total: 36.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.65 -11.26 -45.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029599194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.049 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds