Wall clock time and date at job start Tue Mar 31 2020 05:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.37896 * 119.99604 * 265.47309 * 3 2 1 5 5 C 1.46305 * 120.00442 * 352.17797 * 4 3 2 6 6 C 1.40206 * 120.24797 * 321.17828 * 5 4 3 7 7 C 1.37634 * 119.86768 * 179.97438 * 6 5 4 8 8 C 1.38717 * 120.38885 * 0.02562 * 7 6 5 9 9 C 1.38047 * 120.51365 * 359.97438 * 8 7 6 10 10 C 1.38783 * 120.11526 * 359.73584 * 9 8 7 11 11 O 1.35445 * 120.19221 * 180.25733 * 10 9 8 12 12 C 1.34746 * 116.99980 * 7.15384 * 11 10 9 13 13 H 1.07997 * 119.99844 * 354.99163 * 12 11 10 14 14 C 1.38771 * 119.99780 * 174.97838 * 12 11 10 15 15 N 1.31473 * 119.99749 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99932 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46775 * 60.00239 * 16 14 12 18 18 H 1.48496 * 109.46817 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46954 * 300.00465 * 16 14 12 20 20 C 1.47073 * 119.99786 * 85.47066 * 3 2 1 21 21 O 1.21672 * 119.99599 * 179.97438 * 20 3 2 22 22 N 1.34777 * 120.00389 * 0.02562 * 20 3 2 23 23 C 1.39960 * 119.99882 * 185.34746 * 22 20 3 24 24 C 1.38823 * 120.08249 * 22.07907 * 23 22 20 25 25 C 1.38143 * 119.95134 * 179.97438 * 24 23 22 26 26 C 1.38287 * 120.11253 * 0.02562 * 25 24 23 27 27 C 1.38269 * 120.16377 * 0.02562 * 26 25 24 28 28 C 1.38307 * 120.04494 * 359.69588 * 27 26 25 29 29 F 1.35096 * 120.05785 * 180.30030 * 28 27 26 30 30 H 1.07999 * 119.99514 * 172.45753 * 4 3 2 31 31 H 1.08002 * 120.06908 * 359.95323 * 6 5 4 32 32 H 1.07996 * 119.80697 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.74741 * 179.97438 * 8 7 6 34 34 H 1.08005 * 119.93859 * 179.97438 * 9 8 7 35 35 H 0.97005 * 119.99575 * 179.97438 * 15 14 12 36 36 H 0.97000 * 119.99585 * 5.34751 * 22 20 3 37 37 H 1.07997 * 120.02757 * 359.95829 * 24 23 22 38 38 H 1.07998 * 119.94494 * 179.97438 * 25 24 23 39 39 H 1.08001 * 119.91439 * 179.97438 * 26 25 24 40 40 H 1.07998 * 119.97623 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2574 0.0952 1.1905 5 6 2.5359 0.3663 2.4341 6 6 1.4634 1.2693 2.4460 7 6 0.7899 1.5181 3.6202 8 6 1.1661 0.8809 4.7936 9 6 2.2197 -0.0110 4.8000 10 6 2.9097 -0.2822 3.6268 11 8 3.9404 -1.1610 3.6303 12 6 4.1530 -1.8498 4.7687 13 1 3.5676 -1.6312 5.6495 14 6 5.1241 -2.8403 4.8092 15 7 5.8369 -3.1062 3.7369 16 14 5.4185 -3.7958 6.3871 17 1 4.1713 -4.5000 6.7793 18 1 6.5008 -4.7890 6.1697 19 1 5.8177 -2.8576 7.4667 20 6 3.3034 -0.0996 -1.2697 21 8 4.5201 -0.0986 -1.2697 22 7 2.6296 -0.1916 -2.4334 23 6 3.3249 -0.3994 -3.6301 24 6 4.5961 -0.9569 -3.6085 25 6 5.2797 -1.1613 -4.7914 26 6 4.7002 -0.8110 -5.9971 27 6 3.4348 -0.2544 -6.0240 28 6 2.7421 -0.0521 -4.8442 29 9 1.5032 0.4861 -4.8706 30 1 4.3304 -0.0264 1.2042 31 1 1.1665 1.7689 1.5357 32 1 -0.0364 2.2135 3.6282 33 1 0.6306 1.0842 5.7092 34 1 2.5050 -0.5016 5.7190 35 1 6.5160 -3.7984 3.7653 36 1 1.6627 -0.1137 -2.4413 37 1 5.0503 -1.2305 -2.6677 38 1 6.2688 -1.5947 -4.7744 39 1 5.2378 -0.9718 -6.9199 40 1 2.9850 0.0177 -6.9674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032752001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:26 Heat of formation + Delta-G solvation = 0.863819 kcal Electronic energy + Delta-G solvation = -28824.254324 eV Core-core repulsion = 24485.285809 eV Total energy + Delta-G solvation = -4338.968516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.101 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.02526 -40.59197 -39.49939 -38.44535 -37.09256 -36.21183 -34.92660 -33.54252 -32.64963 -30.77613 -30.31575 -29.43207 -28.86002 -25.71745 -24.79195 -23.36166 -22.60877 -21.78401 -21.11306 -20.86032 -18.84629 -18.35093 -17.95853 -17.27770 -16.94000 -16.17779 -15.84257 -15.57371 -15.22748 -15.01905 -14.95834 -14.70099 -14.46756 -14.37788 -14.03263 -14.01079 -13.76671 -13.35957 -13.19608 -12.96290 -12.75935 -12.56954 -12.49852 -12.08454 -12.02042 -11.96713 -11.67861 -11.63854 -11.11736 -11.07388 -10.96750 -10.76379 -10.66410 -9.87125 -9.75681 -9.53710 -9.13371 -8.95038 -8.29055 -8.13052 -7.47711 -6.78673 -4.34042 0.57505 1.02433 1.12992 2.05887 2.13188 2.73800 2.79545 2.96505 2.98193 2.99624 3.01691 3.51941 3.70320 3.81008 4.05547 4.22288 4.26741 4.56857 4.70774 4.72553 4.85938 4.88014 5.09139 5.23251 5.31049 5.37653 5.45610 5.52382 5.75075 5.79617 5.85967 6.00498 6.02781 6.13068 6.24594 6.28658 6.33819 6.37246 6.47426 6.76913 6.84268 6.89966 7.01252 7.06863 7.22345 7.44336 7.63593 7.73748 8.06058 8.64115 9.25284 10.36204 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.002810 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.595162 B = 9962.093566 C =12102.998278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.264 3.736 3 C -0.209 4.209 4 C 0.151 3.849 5 C -0.207 4.207 6 C -0.030 4.030 7 C -0.217 4.217 8 C -0.046 4.046 9 C -0.231 4.231 10 C 0.181 3.819 11 O -0.149 6.149 12 C -0.395 4.395 13 H 0.099 0.901 14 C 0.046 3.954 15 N -0.839 5.839 16 Si 0.945 3.055 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.266 1.266 20 C 0.587 3.413 21 O -0.512 6.512 22 N -0.670 5.670 23 C 0.131 3.869 24 C -0.111 4.111 25 C -0.105 4.105 26 C -0.119 4.119 27 C -0.133 4.133 28 C 0.057 3.943 29 F -0.141 7.141 30 H 0.159 0.841 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.278 0.722 36 H 0.413 0.587 37 H 0.165 0.835 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 4.482 -11.232 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.049 4.049 3 C -0.217 4.217 4 C 0.128 3.872 5 C -0.209 4.209 6 C -0.048 4.048 7 C -0.236 4.236 8 C -0.064 4.064 9 C -0.250 4.250 10 C 0.123 3.877 11 O -0.048 6.048 12 C -0.470 4.470 13 H 0.116 0.884 14 C -0.163 4.163 15 N -0.470 5.470 16 Si 0.769 3.231 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.191 1.191 20 C 0.379 3.621 21 O -0.389 6.389 22 N -0.313 5.313 23 C 0.035 3.965 24 C -0.131 4.131 25 C -0.124 4.124 26 C -0.138 4.138 27 C -0.152 4.152 28 C 0.035 3.965 29 F -0.119 7.119 30 H 0.177 0.823 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.249 0.751 37 H 0.182 0.818 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.774 4.225 -11.415 12.483 hybrid contribution -0.312 -0.280 0.824 0.924 sum -3.086 3.945 -10.591 11.715 Atomic orbital electron populations 1.81217 1.11680 1.11286 1.07116 1.25442 0.92478 0.93053 0.93908 1.17566 0.84675 1.25616 0.93803 1.23093 1.00439 0.75322 0.88378 1.17952 1.03263 1.08504 0.91183 1.20986 0.91267 0.94912 0.97672 1.20550 1.03713 1.06176 0.93179 1.21022 0.94589 0.93413 0.97387 1.21169 1.00546 1.04506 0.98731 1.19404 0.86707 0.89691 0.91904 1.83817 1.38786 1.44071 1.38154 1.21474 1.21254 1.15867 0.88388 0.88370 1.25427 0.95098 0.96298 0.99438 1.69978 1.19555 1.29368 1.28068 0.85699 0.78864 0.79098 0.79451 1.19163 1.19900 1.19123 1.17658 0.86876 0.75220 0.82375 1.90773 1.12567 1.49114 1.86424 1.43327 1.11081 1.71828 1.05059 1.17855 0.94442 1.00027 0.84183 1.21649 0.92883 0.97368 1.01168 1.21198 1.00307 0.99254 0.91602 1.20990 0.94566 0.99642 0.98568 1.20930 0.95825 1.01994 0.96472 1.17420 0.82300 1.03306 0.93507 1.91473 1.39224 1.83976 1.97255 0.82322 0.86669 0.86928 0.86775 0.84751 0.91157 0.75124 0.81764 0.84878 0.85118 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.65 18.50 41.84 0.77 -6.87 16 2 C 0.26 4.40 10.80 -22.47 -0.24 4.15 16 3 C -0.21 -3.42 5.80 -104.52 -0.61 -4.03 16 4 C 0.15 2.70 8.97 -36.47 -0.33 2.37 16 5 C -0.21 -3.94 5.42 -104.94 -0.57 -4.50 16 6 C -0.03 -0.51 8.33 -39.06 -0.33 -0.84 16 7 C -0.22 -3.52 10.02 -39.62 -0.40 -3.91 16 8 C -0.05 -0.75 10.03 -39.47 -0.40 -1.14 16 9 C -0.23 -4.41 9.15 -39.45 -0.36 -4.77 16 10 C 0.18 3.87 6.67 -38.41 -0.26 3.61 16 11 O -0.15 -3.70 9.21 1.22 0.01 -3.69 16 12 C -0.39 -9.76 9.49 30.93 0.29 -9.46 16 13 H 0.10 2.21 5.22 -52.49 -0.27 1.94 16 14 C 0.05 1.12 5.50 -17.51 -0.10 1.03 16 15 N -0.84 -22.11 13.67 55.49 0.76 -21.35 16 16 Si 0.95 18.45 29.55 -169.99 -5.02 13.42 16 17 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 C 0.59 9.39 7.58 -12.68 -0.10 9.29 16 21 O -0.51 -9.09 13.31 5.21 0.07 -9.02 16 22 N -0.67 -9.51 5.28 -10.87 -0.06 -9.57 16 23 C 0.13 1.79 6.48 -83.62 -0.54 1.25 16 24 C -0.11 -1.46 8.75 -39.40 -0.34 -1.80 16 25 C -0.10 -1.08 10.04 -39.60 -0.40 -1.48 16 26 C -0.12 -1.06 10.04 -39.55 -0.40 -1.46 16 27 C -0.13 -1.32 10.02 -39.54 -0.40 -1.71 16 28 C 0.06 0.70 7.31 -39.24 -0.29 0.41 16 29 F -0.14 -1.80 16.78 2.25 0.04 -1.76 16 30 H 0.16 2.91 7.61 -52.49 -0.40 2.51 16 31 H 0.12 1.83 6.56 -52.49 -0.34 1.48 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.13 2.51 5.66 -52.48 -0.30 2.21 16 35 H 0.28 6.75 8.31 -40.82 -0.34 6.42 16 36 H 0.41 5.45 7.29 -40.82 -0.30 5.15 16 37 H 0.17 2.43 5.58 -52.49 -0.29 2.14 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -28.02 364.54 -6.83 -34.86 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -3.15 Total: 11.51 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -5.74 Total: -13.01 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 1.48 Total: -37.79 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.02 -6.83 -34.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032752001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.720 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds