Wall clock time and date at job start Tue Mar 31 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.37896 * 119.99604 * 265.47309 * 3 2 1 5 5 C 1.46305 * 120.00442 * 352.17797 * 4 3 2 6 6 C 1.40206 * 120.24797 * 321.17828 * 5 4 3 7 7 C 1.37634 * 119.86768 * 179.97438 * 6 5 4 8 8 C 1.38717 * 120.38885 * 0.02562 * 7 6 5 9 9 C 1.38047 * 120.51365 * 359.97438 * 8 7 6 10 10 C 1.38783 * 120.11526 * 359.73584 * 9 8 7 11 11 O 1.35445 * 120.19221 * 180.25733 * 10 9 8 12 12 C 1.34746 * 116.99980 * 7.15384 * 11 10 9 13 13 H 1.07997 * 119.99844 * 354.99163 * 12 11 10 14 14 C 1.38771 * 119.99780 * 174.97838 * 12 11 10 15 15 N 1.31473 * 119.99749 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99932 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46775 * 60.00239 * 16 14 12 18 18 H 1.48496 * 109.46817 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46954 * 300.00465 * 16 14 12 20 20 C 1.47073 * 119.99786 * 85.47066 * 3 2 1 21 21 O 1.21672 * 119.99599 * 179.97438 * 20 3 2 22 22 N 1.34777 * 120.00389 * 0.02562 * 20 3 2 23 23 C 1.39960 * 119.99882 * 185.34746 * 22 20 3 24 24 C 1.38823 * 120.08249 * 22.07907 * 23 22 20 25 25 C 1.38143 * 119.95134 * 179.97438 * 24 23 22 26 26 C 1.38287 * 120.11253 * 0.02562 * 25 24 23 27 27 C 1.38269 * 120.16377 * 0.02562 * 26 25 24 28 28 C 1.38307 * 120.04494 * 359.69588 * 27 26 25 29 29 F 1.35096 * 120.05785 * 180.30030 * 28 27 26 30 30 H 1.07999 * 119.99514 * 172.45753 * 4 3 2 31 31 H 1.08002 * 120.06908 * 359.95323 * 6 5 4 32 32 H 1.07996 * 119.80697 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.74741 * 179.97438 * 8 7 6 34 34 H 1.08005 * 119.93859 * 179.97438 * 9 8 7 35 35 H 0.97005 * 119.99575 * 179.97438 * 15 14 12 36 36 H 0.97000 * 119.99585 * 5.34751 * 22 20 3 37 37 H 1.07997 * 120.02757 * 359.95829 * 24 23 22 38 38 H 1.07998 * 119.94494 * 179.97438 * 25 24 23 39 39 H 1.08001 * 119.91439 * 179.97438 * 26 25 24 40 40 H 1.07998 * 119.97623 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2574 0.0952 1.1905 5 6 2.5359 0.3663 2.4341 6 6 1.4634 1.2693 2.4460 7 6 0.7899 1.5181 3.6202 8 6 1.1661 0.8809 4.7936 9 6 2.2197 -0.0110 4.8000 10 6 2.9097 -0.2822 3.6268 11 8 3.9404 -1.1610 3.6303 12 6 4.1530 -1.8498 4.7687 13 1 3.5676 -1.6312 5.6495 14 6 5.1241 -2.8403 4.8092 15 7 5.8369 -3.1062 3.7369 16 14 5.4185 -3.7958 6.3871 17 1 4.1713 -4.5000 6.7793 18 1 6.5008 -4.7890 6.1697 19 1 5.8177 -2.8576 7.4667 20 6 3.3034 -0.0996 -1.2697 21 8 4.5201 -0.0986 -1.2697 22 7 2.6296 -0.1916 -2.4334 23 6 3.3249 -0.3994 -3.6301 24 6 4.5961 -0.9569 -3.6085 25 6 5.2797 -1.1613 -4.7914 26 6 4.7002 -0.8110 -5.9971 27 6 3.4348 -0.2544 -6.0240 28 6 2.7421 -0.0521 -4.8442 29 9 1.5032 0.4861 -4.8706 30 1 4.3304 -0.0264 1.2042 31 1 1.1665 1.7689 1.5357 32 1 -0.0364 2.2135 3.6282 33 1 0.6306 1.0842 5.7092 34 1 2.5050 -0.5016 5.7190 35 1 6.5160 -3.7984 3.7653 36 1 1.6627 -0.1137 -2.4413 37 1 5.0503 -1.2305 -2.6677 38 1 6.2688 -1.5947 -4.7744 39 1 5.2378 -0.9718 -6.9199 40 1 2.9850 0.0177 -6.9674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032752001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:25 Heat of formation + Delta-G solvation = -13.491347 kcal Electronic energy + Delta-G solvation = -28824.876811 eV Core-core repulsion = 24485.285809 eV Total energy + Delta-G solvation = -4339.591002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.101 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98918 -41.81745 -41.01427 -39.50081 -38.59330 -37.67758 -36.08396 -34.99879 -34.37763 -31.80369 -31.42617 -30.84509 -30.11320 -27.44762 -26.12080 -24.43961 -23.68381 -23.16394 -22.53541 -22.14721 -20.08670 -19.97361 -19.16714 -18.41345 -18.21964 -17.23102 -17.06972 -16.79714 -16.57471 -16.29838 -16.21943 -16.11480 -15.93773 -15.60256 -15.49358 -15.38786 -14.87418 -14.75140 -14.44912 -14.30771 -14.14977 -13.88447 -13.61049 -13.56499 -13.52289 -13.14146 -12.84553 -12.62624 -12.60105 -12.53584 -12.37257 -12.16397 -11.83477 -11.41016 -11.08202 -10.97326 -10.85033 -9.84896 -9.67631 -9.21824 -9.00005 -8.53630 -6.19754 -0.82851 0.07694 0.22680 0.57155 0.69794 1.37569 1.42196 1.43918 1.47558 1.52812 1.72073 2.13227 2.34521 2.67378 2.75228 2.78260 3.05611 3.13324 3.25615 3.37456 3.75501 3.90520 3.98360 4.06494 4.15833 4.32653 4.33985 4.36777 4.42265 4.44844 4.65495 4.78168 4.87241 4.99230 5.03907 5.10039 5.10894 5.20040 5.32608 5.46562 5.50152 5.51176 5.60732 5.90922 5.93232 6.02061 6.04663 6.30442 6.77834 6.89559 7.59978 8.66266 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.011128 B = 0.002810 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.595162 B = 9962.093566 C =12102.998278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.273 3.727 3 C -0.182 4.182 4 C 0.138 3.862 5 C -0.207 4.207 6 C -0.039 4.039 7 C -0.200 4.200 8 C -0.036 4.036 9 C -0.245 4.245 10 C 0.156 3.844 11 O -0.199 6.199 12 C -0.419 4.419 13 H 0.110 0.890 14 C -0.010 4.010 15 N -0.901 5.901 16 Si 1.014 2.986 17 H -0.258 1.258 18 H -0.274 1.274 19 H -0.255 1.255 20 C 0.587 3.413 21 O -0.532 6.532 22 N -0.662 5.662 23 C 0.102 3.898 24 C -0.132 4.132 25 C -0.104 4.104 26 C -0.102 4.102 27 C -0.127 4.127 28 C 0.046 3.954 29 F -0.146 7.146 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.134 0.866 35 H 0.277 0.723 36 H 0.416 0.584 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.171 0.829 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 5.747 -12.599 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.040 4.040 3 C -0.190 4.190 4 C 0.115 3.885 5 C -0.209 4.209 6 C -0.057 4.057 7 C -0.218 4.218 8 C -0.054 4.054 9 C -0.264 4.264 10 C 0.101 3.899 11 O -0.102 6.102 12 C -0.494 4.494 13 H 0.127 0.873 14 C -0.211 4.211 15 N -0.536 5.536 16 Si 0.834 3.166 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.179 1.179 20 C 0.378 3.622 21 O -0.410 6.410 22 N -0.305 5.305 23 C 0.006 3.994 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.145 4.145 28 C 0.024 3.976 29 F -0.125 7.125 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.253 0.747 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.189 0.811 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.736 5.538 -12.807 14.735 hybrid contribution 0.013 -0.404 0.916 1.002 sum -4.723 5.134 -11.891 13.786 Atomic orbital electron populations 1.81226 1.11692 1.11114 1.07419 1.25290 0.92210 0.92918 0.93613 1.17562 0.84658 1.23105 0.93668 1.22991 1.00119 0.76577 0.88844 1.18230 1.03577 1.08248 0.90818 1.21249 0.90820 0.94492 0.99113 1.21077 1.03430 1.05077 0.92249 1.21456 0.93220 0.91540 0.99227 1.21358 1.01525 1.05584 0.97975 1.19944 0.86863 0.89528 0.93545 1.83818 1.41297 1.46441 1.38672 1.21891 1.21910 1.16579 0.88990 0.87272 1.26553 0.94725 0.97123 1.02718 1.70118 1.21567 1.31292 1.30637 0.84696 0.78822 0.77667 0.75449 1.18279 1.19839 1.17895 1.17567 0.86561 0.75325 0.82769 1.90781 1.13450 1.50062 1.86749 1.43170 1.11197 1.71149 1.04960 1.18063 0.95058 1.01994 0.84250 1.21581 0.93294 0.98789 1.01542 1.21509 1.01033 0.98537 0.91127 1.21447 0.94029 0.97201 0.99380 1.21355 0.95902 1.00681 0.96611 1.17647 0.82357 1.03774 0.93821 1.91456 1.39606 1.84140 1.97286 0.83599 0.85139 0.83225 0.82735 0.84862 0.91420 0.74674 0.84215 0.82704 0.81130 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.71 18.50 19.00 0.35 -14.36 16 2 C 0.27 8.91 10.80 88.33 0.95 9.86 16 3 C -0.18 -6.12 5.80 -19.80 -0.11 -6.24 16 4 C 0.14 5.19 8.97 24.29 0.22 5.41 16 5 C -0.21 -8.00 5.42 -20.07 -0.11 -8.11 16 6 C -0.04 -1.25 8.33 22.61 0.19 -1.06 16 7 C -0.20 -5.75 10.02 22.24 0.22 -5.53 16 8 C -0.04 -1.09 10.03 22.34 0.22 -0.86 16 9 C -0.25 -9.35 9.15 22.35 0.20 -9.14 16 10 C 0.16 6.89 6.67 23.03 0.15 7.04 16 11 O -0.20 -10.62 9.21 -18.56 -0.17 -10.79 16 12 C -0.42 -21.92 9.49 67.95 0.64 -21.27 16 13 H 0.11 5.15 5.22 -2.91 -0.02 5.13 16 14 C -0.01 -0.54 5.50 84.87 0.47 -0.07 16 15 N -0.90 -51.12 13.67 21.63 0.30 -50.82 16 16 Si 1.01 39.34 29.55 68.60 2.03 41.37 16 17 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 18 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 20 C 0.59 19.48 7.58 86.56 0.66 20.13 16 21 O -0.53 -20.03 13.31 -4.26 -0.06 -20.09 16 22 N -0.66 -19.11 5.28 -306.54 -1.62 -20.73 16 23 C 0.10 2.78 6.48 38.18 0.25 3.03 16 24 C -0.13 -3.52 8.75 22.39 0.20 -3.32 16 25 C -0.10 -1.95 10.04 22.26 0.22 -1.73 16 26 C -0.10 -1.46 10.04 22.29 0.22 -1.24 16 27 C -0.13 -2.11 10.02 22.29 0.22 -1.89 16 28 C 0.05 1.06 7.31 22.49 0.16 1.23 16 29 F -0.15 -3.56 16.78 44.97 0.75 -2.81 16 30 H 0.15 5.89 7.61 -2.91 -0.02 5.86 16 31 H 0.13 3.83 6.56 -2.91 -0.02 3.81 16 32 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 33 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.13 5.03 5.66 -2.91 -0.02 5.01 16 35 H 0.28 14.50 8.31 -92.70 -0.77 13.73 16 36 H 0.42 11.00 7.29 -92.71 -0.68 10.32 16 37 H 0.14 4.42 5.58 -2.91 -0.02 4.41 16 38 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -66.07 364.54 7.04 -59.03 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.47 Total: 32.96 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 4.99 Total: -13.78 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -0.97 Total: -85.91 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.23 Total: -30.87 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.75 Total: -2.81 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -66.07 7.04 -59.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032752001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.541 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds