Wall clock time and date at job start Tue Mar 31 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38294 * 119.93054 * 2 1 4 4 C 1.38102 * 120.07370 * 180.02562 * 3 2 1 5 5 C 1.38891 * 119.92620 * 0.02562 * 4 3 2 6 6 N 1.40023 * 120.06838 * 180.02562 * 5 4 3 7 7 N 1.40435 * 126.83853 * 226.64929 * 6 5 4 8 8 C 1.31796 * 106.92784 * 180.02562 * 7 6 5 9 9 C 1.47722 * 125.45704 * 180.02562 * 8 7 6 10 10 O 1.21612 * 119.99631 * 5.17008 * 9 8 7 11 11 N 1.34769 * 119.99913 * 185.17411 * 9 8 7 12 12 C 1.46494 * 120.00181 * 355.50483 * 11 9 8 13 13 C 1.36863 * 119.99904 * 175.50046 * 11 9 8 14 14 H 1.07997 * 120.00045 * 332.50491 * 13 11 9 15 15 C 1.39043 * 119.99870 * 152.49117 * 13 11 9 16 16 N 1.31362 * 120.00233 * 352.96806 * 15 13 11 17 17 Si 1.86802 * 119.99751 * 172.96564 * 15 13 11 18 18 H 1.48495 * 109.47480 * 60.00338 * 17 15 13 19 19 H 1.48503 * 109.46870 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47184 * 299.99848 * 17 15 13 21 21 N 1.34057 * 109.08466 * 359.75851 * 8 7 6 22 22 C 1.31483 * 109.76215 * 0.40816 * 21 8 7 23 23 C 1.47862 * 126.04750 * 179.86348 * 22 21 8 24 24 C 1.46861 * 127.15066 * 210.62113 * 23 22 21 25 25 C 1.34282 * 106.00436 * 179.97438 * 24 23 22 26 26 O 1.34177 * 109.05948 * 0.02562 * 25 24 23 27 27 C 1.33959 * 110.81288 * 0.02562 * 26 25 24 28 28 C 1.38874 * 119.85804 * 0.27691 * 5 4 3 29 29 C 1.38110 * 119.92884 * 359.44853 * 28 5 4 30 30 H 1.09003 * 109.47556 * 89.99440 * 1 2 3 31 31 H 1.08997 * 109.47674 * 209.99661 * 1 2 3 32 32 H 1.09004 * 109.47136 * 329.99622 * 1 2 3 33 33 H 1.07995 * 119.96149 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.04244 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.47207 * 35.57858 * 12 11 9 36 36 H 1.09007 * 109.47391 * 155.58423 * 12 11 9 37 37 H 1.09000 * 109.47319 * 275.58076 * 12 11 9 38 38 H 0.97008 * 120.00280 * 179.97438 * 16 15 13 39 39 H 1.08002 * 126.99433 * 0.02562 * 24 23 22 40 40 H 1.08010 * 125.47480 * 180.02562 * 25 24 23 41 41 H 1.07998 * 125.78736 * 180.26707 * 27 26 25 42 42 H 1.08001 * 120.03544 * 179.71893 * 28 5 4 43 43 H 1.07998 * 119.96297 * 180.25439 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2739 0.0000 -0.0016 6 7 5.6741 0.0000 -0.0016 7 7 6.5161 -0.7708 -0.8196 8 6 7.7553 -0.4634 -0.4926 9 6 8.9708 -1.0389 -1.1038 10 8 8.8749 -1.7980 -2.0490 11 7 10.1858 -0.7227 -0.6138 12 6 10.3079 0.2666 0.4597 13 6 11.3055 -1.3259 -1.1191 14 1 11.2389 -2.3140 -1.5498 15 6 12.5289 -0.6664 -1.0783 16 7 12.5876 0.5851 -0.6833 17 14 14.0891 -1.5600 -1.5851 18 1 13.9684 -2.0049 -2.9967 19 1 15.2499 -0.6435 -1.4520 20 1 14.2893 -2.7421 -0.7089 21 7 7.7359 0.4595 0.4796 22 6 6.4923 0.7485 0.7935 23 6 6.0572 1.7178 1.8219 24 6 4.8363 1.6591 2.6359 25 6 4.8654 2.7447 3.4257 26 8 5.9793 3.4460 3.1657 27 6 6.7047 2.8502 2.2100 28 6 3.5780 -1.2018 -0.0080 29 6 2.1969 -1.1984 -0.0017 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5137 32 1 -0.3634 0.8900 0.5139 33 1 1.6552 2.1327 0.0004 34 1 4.1163 2.1382 -0.0010 35 1 9.4575 0.1762 1.1356 36 1 11.2313 0.0915 1.0119 37 1 10.3259 1.2683 0.0304 38 1 13.4412 1.0451 -0.6544 39 1 4.0712 0.8974 2.6060 40 1 4.1129 3.0108 4.1535 41 1 7.6464 3.2051 1.8182 42 1 4.1162 -2.1381 -0.0134 43 1 1.6552 -2.1327 -0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034911344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:06 Heat of formation + Delta-G solvation = 127.736866 kcal Electronic energy + Delta-G solvation = -30271.074147 eV Core-core repulsion = 26093.360316 eV Total energy + Delta-G solvation = -4177.713831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.68666 -41.74831 -39.55211 -38.05642 -34.72233 -34.65256 -33.58048 -31.84428 -31.28040 -31.15750 -30.86940 -29.28722 -27.16511 -26.09556 -24.99251 -23.72040 -23.25695 -22.61913 -21.82810 -21.12863 -20.03316 -19.07950 -18.31783 -17.32422 -16.82643 -16.28991 -15.97875 -15.88419 -15.60973 -15.34623 -14.92071 -14.77229 -14.28732 -14.13694 -14.09228 -13.76170 -13.63084 -13.58083 -13.15390 -12.78997 -12.58542 -12.52846 -12.47444 -12.05355 -11.83690 -11.67717 -11.38436 -11.35012 -11.11200 -10.82383 -10.46797 -10.38589 -10.38294 -10.06697 -9.42380 -9.36013 -9.21184 -8.97139 -8.74610 -8.62637 -8.40620 -7.63563 -6.35579 -3.93233 0.63685 1.07538 1.31416 1.78217 2.15853 2.32956 2.82807 2.95936 3.23366 3.24841 3.28188 3.40496 3.91211 4.10475 4.35996 4.43784 4.54060 4.56463 4.57593 4.70878 4.72873 4.94574 5.06246 5.13799 5.17958 5.23296 5.27277 5.33407 5.44646 5.57465 5.60109 5.66117 5.76214 5.88108 5.97853 6.05024 6.14517 6.26566 6.44416 6.49680 6.53546 6.83713 6.96346 7.07568 7.21318 7.44659 7.53212 8.05116 8.22918 8.50743 9.11991 9.33617 9.94093 10.65511 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.002923 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.937802 B = 9578.254898 C =11301.343975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.106 4.106 4 C -0.103 4.103 5 C 0.146 3.854 6 N -0.341 5.341 7 N -0.262 5.262 8 C 0.229 3.771 9 C 0.510 3.490 10 O -0.571 6.571 11 N -0.405 5.405 12 C 0.101 3.899 13 C -0.302 4.302 14 H 0.101 0.899 15 C 0.035 3.965 16 N -0.866 5.866 17 Si 0.933 3.067 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.271 1.271 21 N -0.493 5.493 22 C 0.344 3.656 23 C -0.139 4.139 24 C -0.188 4.188 25 C -0.034 4.034 26 O -0.175 6.175 27 C 0.044 3.956 28 C -0.098 4.098 29 C -0.107 4.107 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.271 0.729 39 H 0.152 0.848 40 H 0.207 0.793 41 H 0.220 0.780 42 H 0.133 0.867 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.092 6.961 10.265 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.124 4.124 5 C 0.054 3.946 6 N -0.128 5.128 7 N -0.089 5.089 8 C -0.053 4.053 9 C 0.294 3.706 10 O -0.454 6.454 11 N -0.121 5.121 12 C -0.043 4.043 13 C -0.431 4.431 14 H 0.118 0.882 15 C -0.170 4.170 16 N -0.504 5.504 17 Si 0.759 3.241 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.196 1.196 21 N -0.221 5.221 22 C 0.072 3.928 23 C -0.144 4.144 24 C -0.208 4.208 25 C -0.100 4.100 26 O -0.070 6.070 27 C -0.028 4.028 28 C -0.118 4.118 29 C -0.126 4.126 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.170 0.830 40 H 0.224 0.776 41 H 0.237 0.763 42 H 0.151 0.849 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.751 6.576 9.527 24.640 hybrid contribution 0.628 -0.366 -0.234 0.763 sum -21.123 6.210 9.293 23.898 Atomic orbital electron populations 1.20800 0.90761 1.02928 1.02583 1.20025 0.96406 0.92985 0.99136 1.20841 0.92740 0.97990 1.00896 1.21066 0.94513 0.96574 1.00207 1.17420 0.78548 0.94631 1.03991 1.48049 1.04675 1.32230 1.27834 1.78678 1.00830 1.15519 1.13882 1.24730 0.94002 0.93803 0.92780 1.16321 0.80844 0.87902 0.85536 1.90663 1.85018 1.40549 1.29162 1.43386 1.03742 1.35106 1.29913 1.22005 1.00916 0.91689 0.89668 1.19693 0.84271 1.00726 1.38449 0.88173 1.25505 0.99932 0.95289 0.96315 1.69998 1.26822 1.09312 1.44234 0.85888 0.79689 0.78877 0.79619 1.19514 1.20760 1.19639 1.71336 1.16443 1.17679 1.16677 1.21772 0.85757 0.92947 0.92304 1.18798 0.98342 0.96471 1.00763 1.22774 0.98528 1.00807 0.98685 1.23839 0.90051 0.93240 1.02864 1.83926 1.29529 1.46946 1.46579 1.24406 0.96824 0.92271 0.89301 1.21156 0.94353 0.97242 0.99017 1.20935 0.92980 0.98082 1.00569 0.90930 0.91358 0.91365 0.85097 0.85274 0.91325 0.91384 0.93113 0.91862 0.82996 0.77618 0.76318 0.84880 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.00 0.36 -0.26 16 2 C -0.08 -0.71 5.88 -104.59 -0.62 -1.33 16 3 C -0.11 -0.93 9.69 -39.61 -0.38 -1.31 16 4 C -0.10 -1.18 7.30 -39.39 -0.29 -1.47 16 5 C 0.15 2.10 5.54 -83.64 -0.46 1.64 16 6 N -0.34 -6.20 3.73 -8.40 -0.03 -6.23 16 7 N -0.26 -5.96 12.60 32.00 0.40 -5.56 16 8 C 0.23 5.56 7.65 -156.61 -1.20 4.36 16 9 C 0.51 14.26 7.63 -12.39 -0.09 14.16 16 10 O -0.57 -17.63 16.85 5.27 0.09 -17.54 16 11 N -0.40 -11.23 3.00 -123.33 -0.37 -11.60 16 12 C 0.10 2.46 7.93 59.84 0.47 2.93 16 13 C -0.30 -8.68 9.16 -15.01 -0.14 -8.82 16 14 H 0.10 2.94 7.53 -52.49 -0.40 2.55 16 15 C 0.04 0.94 5.15 -17.45 -0.09 0.85 16 16 N -0.87 -23.30 10.73 55.50 0.60 -22.71 16 17 Si 0.93 20.79 29.56 -169.99 -5.02 15.76 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 N -0.49 -10.33 7.58 -8.96 -0.07 -10.39 16 22 C 0.34 6.08 7.70 -154.63 -1.19 4.89 16 23 C -0.14 -1.86 5.29 -103.24 -0.55 -2.40 16 24 C -0.19 -1.92 8.97 -37.49 -0.34 -2.25 16 25 C -0.03 -0.27 12.04 29.34 0.35 0.08 16 26 O -0.17 -1.72 10.54 6.96 0.07 -1.64 16 27 C 0.04 0.49 12.08 29.96 0.36 0.85 16 28 C -0.10 -1.26 9.91 -39.39 -0.39 -1.65 16 29 C -0.11 -1.03 9.69 -39.61 -0.38 -1.42 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.47 7.36 -52.49 -0.39 1.09 16 35 H 0.07 1.55 5.16 -51.93 -0.27 1.28 16 36 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 37 H 0.05 1.27 7.86 -51.93 -0.41 0.86 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.15 1.46 7.33 -52.49 -0.38 1.08 16 40 H 0.21 0.79 8.06 -52.48 -0.42 0.36 16 41 H 0.22 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -35.44 372.44 -7.99 -43.43 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.70 Total: 2.00 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -4.57 Total: 8.87 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.53 Total: -56.49 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.16 Total: -19.18 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.44 -7.99 -43.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034911344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.166 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds