Wall clock time and date at job start Tue Mar 31 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47093 * 2 1 4 4 H 1.08999 * 109.46602 * 54.99774 * 3 2 1 5 5 O 1.42907 * 109.47287 * 295.00447 * 3 2 1 6 6 C 1.35899 * 116.99958 * 92.81611 * 5 3 2 7 7 C 1.38746 * 120.05681 * 4.04235 * 6 5 3 8 8 C 1.38125 * 119.94393 * 180.02562 * 7 6 5 9 9 C 1.38294 * 120.05573 * 359.97438 * 8 7 6 10 10 C 1.38246 * 120.11007 * 359.97438 * 9 8 7 11 11 C 1.50692 * 119.97364 * 180.02562 * 10 9 8 12 12 C 1.38167 * 120.05392 * 359.77382 * 10 9 8 13 13 C 1.50700 * 120.02869 * 180.25349 * 12 10 9 14 14 C 1.50694 * 109.47375 * 174.99900 * 3 2 1 15 15 O 1.21283 * 120.00097 * 114.99626 * 14 3 2 16 16 N 1.34779 * 119.99985 * 295.00418 * 14 3 2 17 17 C 1.39235 * 120.00048 * 185.19687 * 16 14 3 18 18 C 1.39480 * 119.83814 * 213.91759 * 17 16 14 19 19 C 1.36375 * 120.17110 * 179.71886 * 18 17 16 20 20 C 1.40869 * 119.82760 * 0.57369 * 19 18 17 21 21 C 1.41148 * 120.16507 * 179.67585 * 20 19 18 22 22 H 1.07999 * 120.00182 * 210.67598 * 21 20 19 23 23 C 1.39906 * 119.99714 * 30.67686 * 21 20 19 24 24 N 1.30868 * 120.00325 * 8.99034 * 23 21 20 25 25 Si 1.86802 * 120.00039 * 188.98747 * 23 21 20 26 26 H 1.48506 * 109.46871 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47118 * 119.99831 * 25 23 21 28 28 H 1.48491 * 109.47519 * 240.00113 * 25 23 21 29 29 C 1.40867 * 119.67265 * 359.70148 * 20 19 18 30 30 C 1.36376 * 119.82910 * 359.97438 * 29 20 19 31 31 H 1.08999 * 109.47318 * 299.99623 * 1 2 3 32 32 H 1.09004 * 109.47157 * 59.99910 * 1 2 3 33 33 H 1.09003 * 109.47137 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47318 * 240.00377 * 2 1 3 35 35 H 1.08990 * 109.47095 * 120.00285 * 2 1 3 36 36 H 1.07997 * 120.03452 * 0.02562 * 7 6 5 37 37 H 1.07997 * 119.97884 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.94831 * 180.02562 * 9 8 7 39 39 H 1.09004 * 109.47177 * 90.00186 * 11 10 9 40 40 H 1.08999 * 109.47616 * 210.00154 * 11 10 9 41 41 H 1.09004 * 109.47188 * 330.00430 * 11 10 9 42 42 H 1.09005 * 109.46888 * 270.22905 * 13 12 10 43 43 H 1.09003 * 109.46998 * 30.22675 * 13 12 10 44 44 H 1.08998 * 109.47249 * 150.22723 * 13 12 10 45 45 H 0.96995 * 119.99972 * 5.20369 * 16 14 3 46 46 H 1.08001 * 119.91136 * 0.02562 * 18 17 16 47 47 H 1.08000 * 120.08393 * 180.25570 * 19 18 17 48 48 H 0.97004 * 120.00623 * 180.02562 * 24 23 21 49 49 H 1.08004 * 120.09004 * 179.97438 * 29 20 19 50 50 H 1.08001 * 119.91499 * 180.02562 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0815 -1.2210 6 6 0.4919 2.7728 -1.2190 7 6 -0.2348 2.9056 -0.0446 8 6 -1.4240 3.6082 -0.0453 9 6 -1.8902 4.1796 -1.2152 10 6 -1.1674 4.0497 -2.3865 11 6 -1.6780 4.6740 -3.6594 12 6 0.0253 3.3522 -2.3898 13 6 0.8155 3.2157 -3.6657 14 6 3.5418 1.4444 0.1238 15 8 4.2250 1.8611 -0.7875 16 7 4.1260 0.9828 1.2474 17 6 5.5054 1.0839 1.4068 18 6 6.1989 0.0899 2.0973 19 6 7.5508 0.1792 2.2526 20 6 8.2453 1.2848 1.7239 21 6 9.6437 1.3878 1.8864 22 1 10.1092 2.3599 1.9549 23 6 10.4265 0.2305 1.9587 24 7 9.8941 -0.9369 1.7012 25 14 12.2319 0.3517 2.4227 26 1 12.5868 1.7735 2.6635 27 1 12.4797 -0.4357 3.6572 28 1 13.0644 -0.1863 1.3171 29 6 7.5374 2.2875 1.0328 30 6 6.1864 2.1812 0.8798 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.1289 2.4599 0.8695 37 1 -1.9899 3.7123 0.8687 38 1 -2.8200 4.7290 -1.2137 39 1 -1.2904 5.6890 -3.7472 40 1 -1.3454 4.0831 -4.5128 41 1 -2.7675 4.7017 -3.6390 42 1 0.4961 2.3190 -4.1968 43 1 0.6451 4.0901 -4.2939 44 1 1.8769 3.1394 -3.4294 45 1 3.5853 0.5802 1.9448 46 1 5.6644 -0.7550 2.5058 47 1 8.0869 -0.5933 2.7839 48 1 10.4367 -1.7394 1.7517 49 1 8.0630 3.1384 0.6251 50 1 5.6423 2.9490 0.3498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038771229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:25 Heat of formation + Delta-G solvation = -33.980519 kcal Electronic energy + Delta-G solvation = -30520.756776 eV Core-core repulsion = 26477.685129 eV Total energy + Delta-G solvation = -4043.071647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.95889 -39.61515 -38.06070 -37.02627 -34.56860 -34.04635 -33.39863 -32.80618 -31.38181 -29.65182 -29.20303 -27.83664 -27.40561 -26.42158 -24.79952 -22.74834 -22.13643 -21.70770 -21.11463 -20.44701 -19.44472 -18.18787 -17.51404 -17.26754 -16.26432 -16.20423 -15.74217 -15.63570 -15.19368 -14.70417 -14.52808 -14.21680 -14.08539 -13.94475 -13.73974 -13.22338 -13.10052 -13.04901 -12.74927 -12.71456 -12.64532 -12.36228 -12.19818 -12.11223 -11.97885 -11.94307 -11.80557 -11.46497 -11.41059 -11.28424 -11.17462 -11.06734 -10.94005 -10.76184 -10.57377 -9.95863 -9.56832 -9.43093 -9.18384 -8.94063 -8.76612 -8.17762 -7.58762 -6.95636 -6.71079 -4.34626 1.12690 1.29303 2.45833 2.73774 2.94703 3.05264 3.07874 3.13197 3.30086 3.52960 3.80930 3.94217 4.44027 4.57535 4.61578 4.62801 4.67421 4.78367 4.85039 4.96547 5.02751 5.07851 5.20832 5.26834 5.35694 5.42616 5.48701 5.58777 5.60308 5.64682 5.66689 5.70240 5.79571 5.84439 6.00030 6.14863 6.15424 6.21689 6.30425 6.37323 6.43933 6.62725 6.70231 6.86620 7.02319 7.15112 7.23050 7.29935 7.56745 7.66954 7.83195 8.01293 8.19848 8.25655 8.56664 8.67447 8.87510 8.95524 10.22302 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.001966 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.716660 B =14237.438218 C =14781.837758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.140 4.140 3 C 0.067 3.933 4 H 0.099 0.901 5 O -0.276 6.276 6 C 0.139 3.861 7 C -0.215 4.215 8 C -0.082 4.082 9 C -0.160 4.160 10 C -0.052 4.052 11 C -0.115 4.115 12 C -0.117 4.117 13 C -0.109 4.109 14 C 0.499 3.501 15 O -0.506 6.506 16 N -0.646 5.646 17 C -0.001 4.001 18 C -0.115 4.115 19 C -0.144 4.144 20 C 0.105 3.895 21 C -0.458 4.458 22 H 0.078 0.922 23 C 0.071 3.929 24 N -0.802 5.802 25 Si 0.912 3.088 26 H -0.261 1.261 27 H -0.273 1.273 28 H -0.275 1.275 29 C -0.209 4.209 30 C -0.079 4.079 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.395 0.605 46 H 0.091 0.909 47 H 0.123 0.877 48 H 0.279 0.721 49 H 0.096 0.904 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.879 3.781 -2.867 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.178 4.178 3 C 0.007 3.993 4 H 0.116 0.884 5 O -0.188 6.188 6 C 0.093 3.907 7 C -0.233 4.233 8 C -0.100 4.100 9 C -0.178 4.178 10 C -0.052 4.052 11 C -0.172 4.172 12 C -0.117 4.117 13 C -0.166 4.166 14 C 0.283 3.717 15 O -0.380 6.380 16 N -0.290 5.290 17 C -0.093 4.093 18 C -0.135 4.135 19 C -0.164 4.164 20 C 0.103 3.897 21 C -0.488 4.488 22 H 0.096 0.904 23 C -0.145 4.145 24 N -0.429 5.429 25 Si 0.737 3.263 26 H -0.185 1.185 27 H -0.198 1.198 28 H -0.200 1.200 29 C -0.229 4.229 30 C -0.099 4.099 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.228 0.772 46 H 0.110 0.890 47 H 0.141 0.859 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.182 3.827 -3.733 22.817 hybrid contribution 0.453 -0.398 0.834 1.029 sum -21.729 3.429 -2.898 22.188 Atomic orbital electron populations 1.21952 0.94557 1.02362 1.02376 1.22007 0.97156 0.94237 1.04354 1.22380 0.93887 0.94977 0.88078 0.88355 1.86227 1.35461 1.63435 1.33710 1.18850 0.85739 0.92334 0.93736 1.21281 0.98181 1.06291 0.97567 1.20846 0.95153 0.96012 0.98028 1.20876 1.01050 1.03392 0.92460 1.19578 0.93218 0.96650 0.95751 1.20826 1.01028 1.00707 0.94633 1.19090 0.96500 1.01883 0.94275 1.20665 1.00547 1.01685 0.93684 1.20053 0.88541 0.80129 0.82926 1.90742 1.64183 1.44988 1.38109 1.42861 1.07450 1.60417 1.18310 1.17146 0.80733 0.98844 1.12606 1.20231 0.95032 0.95985 1.02250 1.20941 0.91497 1.00947 1.03041 1.17698 0.93344 0.90827 0.87874 1.19576 0.91908 0.93574 1.43782 0.90385 1.25907 1.01176 0.94831 0.92618 1.69806 1.38032 0.99159 1.35883 0.86196 0.81739 0.79595 0.78779 1.18477 1.19830 1.19999 1.20726 0.93371 1.02540 1.06253 1.20252 0.94621 0.95629 0.99413 0.92295 0.92029 0.92017 0.89942 0.89749 0.85174 0.85952 0.86157 0.90931 0.91077 0.91460 0.91506 0.91638 0.90528 0.77153 0.89046 0.85884 0.91006 0.88548 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.44 37.16 0.31 -1.06 16 2 C -0.14 -1.48 5.61 -26.73 -0.15 -1.63 16 3 C 0.07 0.88 2.58 -27.88 -0.07 0.81 16 4 H 0.10 1.07 5.38 -51.93 -0.28 0.79 16 5 O -0.28 -4.12 8.27 -39.28 -0.32 -4.45 16 6 C 0.14 1.79 5.22 -39.22 -0.20 1.58 16 7 C -0.21 -2.29 7.10 -39.44 -0.28 -2.57 16 8 C -0.08 -0.76 10.04 -39.60 -0.40 -1.16 16 9 C -0.16 -1.47 9.70 -39.56 -0.38 -1.85 16 10 C -0.05 -0.52 5.88 -104.65 -0.62 -1.13 16 11 C -0.12 -0.84 9.18 36.00 0.33 -0.51 16 12 C -0.12 -1.40 5.89 -104.47 -0.62 -2.02 16 13 C -0.11 -1.23 8.96 36.01 0.32 -0.90 16 14 C 0.50 8.87 6.90 -10.99 -0.08 8.80 16 15 O -0.51 -11.49 14.21 -14.30 -0.20 -11.69 16 16 N -0.65 -11.10 5.24 -9.74 -0.05 -11.15 16 17 C 0.00 -0.03 6.28 -83.57 -0.52 -0.55 16 18 C -0.11 -2.58 9.89 -39.79 -0.39 -2.97 16 19 C -0.14 -3.67 8.59 -39.26 -0.34 -4.01 16 20 C 0.11 2.81 5.54 -106.80 -0.59 2.22 16 21 C -0.46 -12.16 9.04 -37.85 -0.34 -12.50 16 22 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 23 C 0.07 1.78 5.27 -17.34 -0.09 1.69 16 24 N -0.80 -20.77 10.87 55.55 0.60 -20.16 16 25 Si 0.91 18.75 29.57 -169.99 -5.03 13.72 16 26 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 28 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 29 C -0.21 -5.32 9.74 -39.26 -0.38 -5.70 16 30 C -0.08 -1.91 8.57 -39.79 -0.34 -2.25 16 31 H 0.06 0.44 6.81 -51.93 -0.35 0.09 16 32 H 0.06 0.63 6.20 -51.93 -0.32 0.31 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.75 7.63 -51.93 -0.40 0.36 16 36 H 0.13 1.19 4.60 -52.49 -0.24 0.95 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.48 6.72 -51.93 -0.35 0.14 16 41 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.60 6.72 -51.93 -0.35 0.26 16 44 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 45 H 0.39 5.11 8.35 -40.82 -0.34 4.77 16 46 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 47 H 0.12 3.21 6.29 -52.49 -0.33 2.88 16 48 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 49 H 0.10 2.34 8.06 -52.48 -0.42 1.91 16 50 H 0.10 2.41 6.45 -52.49 -0.34 2.08 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -31.69 399.64 -10.85 -42.54 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -7.04 Total: 10.88 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -4.83 Total: -25.72 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.55 Total: -31.31 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.53 Total: -16.14 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.69 -10.85 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038771229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.561 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds