Wall clock time and date at job start Tue Mar 31 2020 06:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46923 * 2 1 4 4 H 1.08997 * 109.46882 * 304.99774 * 3 2 1 5 5 O 1.42893 * 109.47123 * 65.00002 * 3 2 1 6 6 C 1.35904 * 116.99929 * 259.79127 * 5 3 2 7 7 C 1.38746 * 120.05418 * 5.77970 * 6 5 3 8 8 C 1.38124 * 119.94205 * 179.74750 * 7 6 5 9 9 C 1.38290 * 120.05632 * 0.50494 * 8 7 6 10 10 C 1.38244 * 120.11018 * 359.77469 * 9 8 7 11 11 C 1.50703 * 119.97435 * 179.97438 * 10 9 8 12 12 C 1.38166 * 120.05766 * 359.97129 * 10 9 8 13 13 C 1.50688 * 120.03269 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46587 * 184.99956 * 3 2 1 15 15 O 1.21283 * 119.99746 * 245.27337 * 14 3 2 16 16 N 1.34772 * 120.00250 * 65.00433 * 14 3 2 17 17 C 1.39239 * 120.00142 * 175.98578 * 16 14 3 18 18 C 1.39479 * 119.83529 * 321.66301 * 17 16 14 19 19 C 1.36374 * 120.17281 * 179.75798 * 18 17 16 20 20 C 1.40874 * 119.82663 * 0.51733 * 19 18 17 21 21 C 1.41152 * 120.16263 * 179.72007 * 20 19 18 22 22 H 1.08001 * 119.99609 * 155.83777 * 21 20 19 23 23 C 1.39902 * 120.00118 * 335.83144 * 21 20 19 24 24 N 1.30869 * 120.00291 * 329.95312 * 23 21 20 25 25 Si 1.86801 * 119.99757 * 149.94989 * 23 21 20 26 26 H 1.48505 * 109.47084 * 94.98978 * 25 23 21 27 27 H 1.48500 * 109.46916 * 214.99053 * 25 23 21 28 28 H 1.48500 * 109.47170 * 334.99252 * 25 23 21 29 29 C 1.40874 * 119.66971 * 359.73209 * 20 19 18 30 30 C 1.36375 * 119.82624 * 0.02562 * 29 20 19 31 31 H 1.08998 * 109.47500 * 300.00056 * 1 2 3 32 32 H 1.09001 * 109.47189 * 59.99971 * 1 2 3 33 33 H 1.09003 * 109.47293 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46977 * 239.99898 * 2 1 3 35 35 H 1.08997 * 109.46747 * 120.00225 * 2 1 3 36 36 H 1.08004 * 120.03382 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.97769 * 180.25908 * 8 7 6 38 38 H 1.07998 * 119.94733 * 179.74550 * 9 8 7 39 39 H 1.09002 * 109.46830 * 269.97668 * 11 10 9 40 40 H 1.09004 * 109.46487 * 29.97229 * 11 10 9 41 41 H 1.08992 * 109.47097 * 149.97445 * 11 10 9 42 42 H 1.09003 * 109.47270 * 269.97979 * 13 12 10 43 43 H 1.09005 * 109.47146 * 29.97536 * 13 12 10 44 44 H 1.08997 * 109.47864 * 149.97466 * 13 12 10 45 45 H 0.97004 * 120.00367 * 355.98266 * 16 14 3 46 46 H 1.08002 * 119.91549 * 0.02562 * 18 17 16 47 47 H 1.07998 * 120.08757 * 180.24819 * 19 18 17 48 48 H 0.96994 * 120.00344 * 179.97438 * 24 23 21 49 49 H 1.07995 * 120.08423 * 179.97438 * 29 20 19 50 50 H 1.07999 * 119.90872 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 0.5763 2.8979 1.1797 7 6 -0.1818 2.9879 0.0212 8 6 -1.2877 3.8145 -0.0166 9 6 -1.6335 4.5600 1.0957 10 6 -0.8764 4.4765 2.2493 11 6 -1.2557 5.2907 3.4594 12 6 0.2278 3.6471 2.2939 13 6 1.0523 3.5561 3.5519 14 6 3.5418 1.4443 -0.1238 15 8 4.2251 1.8564 0.7895 16 7 4.1259 0.9828 -1.2473 17 6 5.5081 1.0613 -1.3961 18 6 6.1935 2.1836 -0.9311 19 6 7.5478 2.2654 -1.0689 20 6 8.2533 1.2177 -1.6926 21 6 9.6543 1.2977 -1.8442 22 1 10.2388 0.3953 -1.9464 23 6 10.2858 2.5460 -1.8622 24 7 9.6501 3.5944 -2.3197 25 14 12.0364 2.7161 -1.2329 26 1 12.9838 2.6160 -2.3721 27 1 12.1978 4.0347 -0.5692 28 1 12.3193 1.6329 -0.2573 29 6 7.5534 0.0898 -2.1644 30 6 6.1997 0.0200 -2.0149 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.0904 2.4093 -0.8493 37 1 -1.8807 3.8818 -0.9168 38 1 -2.4962 5.2089 1.0629 39 1 -0.7543 6.2577 3.4184 40 1 -2.3352 5.4413 3.4721 41 1 -0.9519 4.7620 4.3628 42 1 1.8439 4.3048 3.5225 43 1 0.4149 3.7351 4.4179 44 1 1.4945 2.5626 3.6255 45 1 3.5835 0.5959 -1.9523 46 1 5.6508 2.9879 -0.4568 47 1 8.0775 3.1332 -0.7047 48 1 10.0878 4.4599 -2.3318 49 1 8.0875 -0.7172 -2.6439 50 1 5.6618 -0.8439 -2.3765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038771232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:29 Heat of formation + Delta-G solvation = -34.849671 kcal Electronic energy + Delta-G solvation = -30594.482727 eV Core-core repulsion = 26551.373390 eV Total energy + Delta-G solvation = -4043.109337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.90132 -39.55483 -38.03143 -36.99664 -34.56035 -34.06066 -33.40546 -32.87132 -31.32557 -29.58876 -29.31141 -27.81395 -27.40879 -26.41893 -24.79434 -22.71210 -22.05557 -21.63526 -21.27855 -20.42839 -19.37795 -18.15501 -17.52561 -17.30473 -16.26350 -16.16905 -15.72025 -15.56694 -15.20311 -14.77806 -14.49787 -14.21674 -14.05259 -13.94754 -13.73239 -13.22705 -13.11945 -13.04282 -12.79336 -12.71502 -12.62296 -12.34018 -12.18954 -12.06795 -11.98399 -11.93291 -11.83031 -11.41949 -11.36636 -11.27790 -11.17602 -11.10879 -10.95806 -10.68216 -10.59472 -10.01248 -9.65243 -9.38716 -9.03563 -8.91964 -8.75290 -8.16140 -7.57347 -7.15938 -6.85864 -4.30702 1.15563 1.30966 2.51299 2.78325 2.93506 3.05175 3.06985 3.12157 3.31407 3.58069 3.81893 3.89627 4.46717 4.50870 4.62316 4.63935 4.66594 4.81736 4.85230 4.96837 5.00990 5.11995 5.22919 5.29238 5.34272 5.43516 5.50565 5.56562 5.64719 5.67732 5.69185 5.75262 5.82391 5.84363 5.99741 6.11524 6.18410 6.23621 6.32245 6.33632 6.46521 6.65969 6.73485 6.94233 6.99878 7.06745 7.24082 7.30864 7.52488 7.63676 7.89041 8.00601 8.15473 8.24500 8.54921 8.70821 8.82081 8.96199 10.04497 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.002202 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.801904 B =12712.772572 C =13786.971885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.136 4.136 3 C 0.066 3.934 4 H 0.100 0.900 5 O -0.276 6.276 6 C 0.138 3.862 7 C -0.216 4.216 8 C -0.083 4.083 9 C -0.159 4.159 10 C -0.053 4.053 11 C -0.117 4.117 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.496 3.504 15 O -0.507 6.507 16 N -0.645 5.645 17 C -0.017 4.017 18 C -0.074 4.074 19 C -0.168 4.168 20 C 0.113 3.887 21 C -0.464 4.464 22 H 0.082 0.918 23 C 0.085 3.915 24 N -0.771 5.771 25 Si 0.898 3.102 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.258 1.258 29 C -0.220 4.220 30 C -0.093 4.093 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.393 0.607 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.284 0.716 49 H 0.096 0.904 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.730 0.020 4.457 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.006 3.994 4 H 0.117 0.883 5 O -0.188 6.188 6 C 0.092 3.908 7 C -0.234 4.234 8 C -0.101 4.101 9 C -0.177 4.177 10 C -0.053 4.053 11 C -0.173 4.173 12 C -0.116 4.116 13 C -0.165 4.165 14 C 0.281 3.719 15 O -0.381 6.381 16 N -0.290 5.290 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.188 4.188 20 C 0.110 3.890 21 C -0.492 4.492 22 H 0.100 0.900 23 C -0.136 4.136 24 N -0.394 5.394 25 Si 0.721 3.279 26 H -0.195 1.195 27 H -0.199 1.199 28 H -0.181 1.181 29 C -0.240 4.240 30 C -0.114 4.114 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.226 0.774 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.094 0.906 49 H 0.114 0.886 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.102 0.547 5.242 21.750 hybrid contribution 0.415 -0.009 -0.576 0.710 sum -20.687 0.538 4.667 21.214 Atomic orbital electron populations 1.21916 0.94599 1.02347 1.02327 1.21961 0.97092 0.94111 1.04279 1.22413 0.93834 0.95098 0.88050 0.88297 1.86212 1.42951 1.57385 1.32268 1.18874 0.87178 0.90693 0.94066 1.21311 0.98874 1.05066 0.98179 1.20851 0.95885 0.95168 0.98167 1.20876 1.01355 1.02231 0.93246 1.19573 0.93813 0.96029 0.95858 1.20866 1.01622 0.99361 0.95489 1.19094 0.98263 0.98690 0.95541 1.20683 0.98776 1.03503 0.93569 1.20167 0.88676 0.80073 0.82998 1.90743 1.64248 1.45059 1.38093 1.42825 1.07148 1.61228 1.17831 1.16996 0.80622 0.97977 1.15297 1.20281 0.94769 0.95161 0.99194 1.20705 0.92605 1.00954 1.04488 1.17608 0.93091 0.90628 0.87625 1.19500 0.92338 0.93059 1.44328 0.90019 1.25938 1.00432 0.95322 0.91910 1.69914 1.39322 1.01320 1.28848 0.86475 0.82107 0.79054 0.80237 1.19484 1.19862 1.18116 1.20497 0.92749 1.01426 1.09341 1.20047 0.94579 0.95289 1.01436 0.92030 0.92378 0.91981 0.89751 0.89966 0.85110 0.85947 0.86146 0.90884 0.91524 0.90906 0.91156 0.91569 0.90942 0.77361 0.88632 0.87532 0.90557 0.88556 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.51 37.16 0.32 -1.03 16 2 C -0.14 -1.43 5.61 -26.73 -0.15 -1.58 16 3 C 0.07 0.89 2.53 -27.88 -0.07 0.82 16 4 H 0.10 1.12 5.39 -51.93 -0.28 0.84 16 5 O -0.28 -4.18 8.15 -39.29 -0.32 -4.50 16 6 C 0.14 1.83 5.64 -39.22 -0.22 1.61 16 7 C -0.22 -2.39 7.44 -39.44 -0.29 -2.68 16 8 C -0.08 -0.80 10.04 -39.60 -0.40 -1.20 16 9 C -0.16 -1.53 9.70 -39.56 -0.38 -1.92 16 10 C -0.05 -0.55 5.88 -104.64 -0.62 -1.17 16 11 C -0.12 -0.90 9.60 36.01 0.35 -0.55 16 12 C -0.12 -1.44 5.89 -104.48 -0.62 -2.05 16 13 C -0.11 -1.27 9.38 36.00 0.34 -0.94 16 14 C 0.50 8.96 6.89 -10.99 -0.08 8.89 16 15 O -0.51 -11.68 14.47 -14.30 -0.21 -11.89 16 16 N -0.65 -11.25 5.22 -9.74 -0.05 -11.30 16 17 C -0.02 -0.38 6.20 -83.57 -0.52 -0.90 16 18 C -0.07 -1.86 8.57 -39.79 -0.34 -2.20 16 19 C -0.17 -4.49 8.71 -39.26 -0.34 -4.84 16 20 C 0.11 3.03 5.55 -106.80 -0.59 2.43 16 21 C -0.46 -12.25 8.95 -37.85 -0.34 -12.58 16 22 H 0.08 2.06 8.00 -52.49 -0.42 1.64 16 23 C 0.09 2.14 4.82 -17.34 -0.08 2.05 16 24 N -0.77 -19.86 11.76 55.55 0.65 -19.21 16 25 Si 0.90 18.47 29.65 -169.99 -5.04 13.43 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 28 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 29 C -0.22 -5.32 9.74 -39.26 -0.38 -5.70 16 30 C -0.09 -2.04 9.90 -39.79 -0.39 -2.43 16 31 H 0.06 0.62 6.60 -51.93 -0.34 0.28 16 32 H 0.06 0.43 6.79 -51.93 -0.35 0.08 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.74 7.66 -51.93 -0.40 0.34 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.13 1.24 4.33 -52.48 -0.23 1.01 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.07 0.52 5.95 -51.93 -0.31 0.21 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.61 5.95 -51.93 -0.31 0.30 16 44 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 45 H 0.39 5.18 8.40 -40.82 -0.34 4.83 16 46 H 0.10 2.42 6.73 -52.49 -0.35 2.06 16 47 H 0.11 2.94 6.59 -52.49 -0.35 2.60 16 48 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 49 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 50 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -31.69 401.18 -10.74 -42.43 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.01 Total: 10.96 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -4.82 Total: -25.97 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.60 Total: -30.51 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.53 Total: -16.39 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.04 Total: 13.43 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.69 -10.74 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038771232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.584 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds