Wall clock time and date at job start Tue Mar 31 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47285 * 2 1 4 4 O 1.42900 * 109.46812 * 120.00080 * 2 1 3 5 5 C 1.35731 * 117.00337 * 83.03784 * 4 2 1 6 6 C 1.39045 * 119.88060 * 183.19466 * 5 4 2 7 7 C 1.37642 * 120.11400 * 179.72483 * 6 5 4 8 8 C 1.40036 * 119.88035 * 0.54375 * 7 6 5 9 9 C 1.46896 * 120.11801 * 179.70474 * 8 7 6 10 10 C 1.35224 * 119.99730 * 0.02562 * 9 8 7 11 11 C 1.41821 * 119.99706 * 179.97438 * 10 9 8 12 12 O 1.21799 * 120.00026 * 0.02562 * 11 10 9 13 13 C 1.47674 * 119.99786 * 180.02562 * 11 10 9 14 14 C 1.39805 * 120.07814 * 359.72373 * 13 11 10 15 15 C 1.37641 * 119.91883 * 179.79008 * 14 13 11 16 16 C 1.39153 * 120.08240 * 0.46543 * 15 14 13 17 17 O 1.35562 * 119.92546 * 179.76326 * 16 15 14 18 18 C 1.34777 * 116.99872 * 185.46452 * 17 16 15 19 19 H 1.07998 * 120.00333 * 354.91444 * 18 17 16 20 20 C 1.38746 * 119.99753 * 174.91213 * 18 17 16 21 21 N 1.31492 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99917 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47264 * 89.99912 * 22 20 18 24 24 H 1.48499 * 109.47455 * 210.00465 * 22 20 18 25 25 H 1.48506 * 109.47217 * 330.00145 * 22 20 18 26 26 C 1.39160 * 120.15267 * 359.78590 * 16 15 14 27 27 C 1.37644 * 120.07692 * 359.97438 * 26 16 15 28 28 C 1.40040 * 119.76398 * 359.72901 * 8 7 6 29 29 C 1.37638 * 119.88269 * 0.02562 * 28 8 7 30 30 H 1.09006 * 109.47424 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47545 * 300.00410 * 1 2 3 32 32 H 1.09009 * 109.46876 * 60.00189 * 1 2 3 33 33 H 1.09000 * 109.47545 * 239.99590 * 2 1 3 34 34 H 1.08996 * 109.47060 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47124 * 299.99769 * 3 2 1 36 36 H 1.09006 * 109.46903 * 60.00007 * 3 2 1 37 37 H 1.08001 * 119.94041 * 359.97438 * 6 5 4 38 38 H 1.07995 * 120.05511 * 180.27730 * 7 6 5 39 39 H 1.08000 * 119.99839 * 180.02562 * 9 8 7 40 40 H 1.08001 * 119.99948 * 0.02562 * 10 9 8 41 41 H 1.08000 * 120.03711 * 0.02562 * 14 13 11 42 42 H 1.07999 * 119.95901 * 180.22923 * 15 14 13 43 43 H 0.96996 * 119.99553 * 179.97438 * 21 20 18 44 44 H 1.07994 * 119.96486 * 179.97438 * 26 16 15 45 45 H 1.08001 * 120.04002 * 179.97438 * 27 26 16 46 46 H 1.08004 * 120.06174 * 180.02562 * 28 8 7 47 47 H 1.07991 * 119.94102 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.0734 -2.0282 1.1121 6 6 2.4647 -2.7483 2.2353 7 6 2.5291 -4.1224 2.1869 8 6 2.2106 -4.7943 1.0002 9 6 2.2837 -6.2602 0.9408 10 6 2.6587 -6.9633 2.0334 11 6 2.7288 -8.3786 1.9762 12 8 2.4517 -8.9608 0.9428 13 6 3.1377 -9.1464 3.1695 14 6 3.4616 -8.4794 4.3547 15 6 3.8382 -9.1986 5.4663 16 6 3.9060 -10.5873 5.4085 17 8 4.2819 -11.2921 6.5038 18 6 4.4372 -12.6222 6.3518 19 1 4.1846 -13.0916 5.4125 20 6 4.9217 -13.3885 7.4021 21 7 5.2288 -12.8172 8.5459 22 14 5.1363 -15.2322 7.1917 23 1 6.5015 -15.5166 6.6814 24 1 4.9474 -15.9053 8.5018 25 1 4.1305 -15.7405 6.2245 26 6 3.5893 -11.2541 4.2289 27 6 3.2072 -10.5417 3.1149 28 6 1.8225 -4.0637 -0.1297 29 6 1.7566 -2.6902 -0.0689 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.1299 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.7147 -2.2288 3.1485 38 1 2.8288 -4.6810 3.0612 39 1 2.0380 -6.7764 0.0245 40 1 2.9039 -6.4470 2.9498 41 1 3.4128 -7.4015 4.3991 42 1 4.0849 -8.6842 6.3833 43 1 5.5672 -13.3530 9.2802 44 1 3.6434 -12.3319 4.1874 45 1 2.9620 -11.0598 2.1996 46 1 1.5754 -4.5770 -1.0473 47 1 1.4579 -2.1259 -0.9398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040139702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:57 Heat of formation + Delta-G solvation = -38.431238 kcal Electronic energy + Delta-G solvation = -28052.098570 eV Core-core repulsion = 23938.426741 eV Total energy + Delta-G solvation = -4113.671829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.151 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.69211 -39.63820 -38.72037 -38.10971 -36.20246 -34.21145 -33.18006 -32.51438 -31.35311 -30.47234 -29.94260 -28.67799 -27.76318 -25.69681 -24.77705 -23.73750 -22.40528 -22.04317 -21.54105 -20.36807 -18.84451 -18.77704 -17.98798 -17.45353 -16.50316 -16.34902 -15.93266 -15.36442 -15.23410 -14.82109 -14.62808 -14.46915 -14.14099 -14.12834 -13.98922 -13.69870 -13.66059 -13.60405 -13.22270 -12.95540 -12.83433 -12.77575 -12.69767 -12.42884 -12.18634 -11.98692 -11.80958 -11.59872 -11.53198 -11.39701 -11.34020 -10.91087 -10.89454 -10.70620 -10.53212 -9.93429 -9.51702 -9.37678 -9.29326 -9.00481 -8.34578 -8.03613 -7.38580 -6.65203 -4.20536 0.30150 1.04227 1.44530 2.14246 2.20136 2.73993 3.03873 3.05713 3.10710 3.40646 3.71127 3.83157 4.20054 4.30967 4.38917 4.44340 4.50004 4.56220 4.58326 4.83970 4.91568 4.94957 5.00369 5.00416 5.05760 5.15725 5.17844 5.20064 5.25921 5.41949 5.55318 5.56411 5.62069 5.63946 5.67679 5.80386 5.93823 5.95031 5.97614 6.06504 6.19008 6.38107 6.46152 6.51026 6.52854 6.77516 6.92814 7.02143 7.04648 7.25132 7.27062 7.65280 7.80728 8.11879 8.79730 9.46008 10.51291 Molecular weight = 352.15amu Principal moments of inertia in cm(-1) A = 0.027674 B = 0.001459 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.520639 B =19186.833983 C =20045.323697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.074 3.926 3 C -0.149 4.149 4 O -0.309 6.309 5 C 0.141 3.859 6 C -0.155 4.155 7 C -0.058 4.058 8 C -0.112 4.112 9 C -0.024 4.024 10 C -0.224 4.224 11 C 0.428 3.572 12 O -0.495 6.495 13 C -0.269 4.269 14 C -0.029 4.029 15 C -0.205 4.205 16 C 0.175 3.825 17 O -0.160 6.160 18 C -0.394 4.394 19 H 0.098 0.902 20 C 0.043 3.957 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.265 1.265 26 C -0.249 4.249 27 C -0.009 4.009 28 C -0.055 4.055 29 C -0.216 4.216 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.274 0.726 44 H 0.132 0.868 45 H 0.118 0.882 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 23.992 -15.902 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.018 3.982 3 C -0.206 4.206 4 O -0.223 6.223 5 C 0.096 3.904 6 C -0.173 4.173 7 C -0.076 4.076 8 C -0.112 4.112 9 C -0.042 4.042 10 C -0.242 4.242 11 C 0.316 3.684 12 O -0.379 6.379 13 C -0.271 4.271 14 C -0.048 4.048 15 C -0.224 4.224 16 C 0.118 3.882 17 O -0.061 6.061 18 C -0.469 4.469 19 H 0.115 0.885 20 C -0.164 4.164 21 N -0.483 5.483 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.189 1.189 26 C -0.269 4.269 27 C -0.028 4.028 28 C -0.073 4.073 29 C -0.235 4.235 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.084 0.916 44 H 0.149 0.851 45 H 0.136 0.864 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.856 23.825 -15.743 29.368 hybrid contribution 0.055 -0.923 -0.143 0.935 sum -6.800 22.902 -15.886 28.690 Atomic orbital electron populations 1.22379 0.94883 1.03270 1.03279 1.22489 0.94444 0.93745 0.87502 1.21852 1.02226 0.93344 1.03177 1.86104 1.80353 1.16174 1.39627 1.19221 0.94704 0.82503 0.94019 1.20395 1.05866 0.93428 0.97643 1.21330 0.95578 0.93190 0.97521 1.19025 1.04790 0.93050 0.94353 1.22479 0.91737 0.91344 0.98686 1.22707 1.05299 0.96296 0.99924 1.19052 0.73747 0.88539 0.87072 1.90581 1.41280 1.73651 1.32350 1.19770 1.17297 0.94322 0.95750 1.20835 0.94169 0.98377 0.91368 1.20150 1.11325 0.91223 0.99708 1.19641 0.90436 0.91504 0.86659 1.83896 1.71399 1.21467 1.29312 1.21508 1.44862 0.79212 1.01343 0.88453 1.25402 0.95615 1.00942 0.94411 1.70006 1.38655 1.36972 1.02699 0.85643 0.79311 0.79758 0.78413 1.19597 1.20035 1.18906 1.21124 1.11199 1.00875 0.93667 1.20916 0.92026 0.92726 0.97086 1.21177 0.95397 0.93058 0.97682 1.21186 1.09062 0.95460 0.97770 0.91741 0.91317 0.90910 0.90696 0.91545 0.90424 0.91358 0.84804 0.84453 0.84961 0.85234 0.86326 0.85966 0.91571 0.85053 0.86369 0.85218 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 9.25 37.16 0.34 -0.57 16 2 C 0.07 0.44 2.87 -26.73 -0.08 0.36 16 3 C -0.15 -0.66 9.56 37.16 0.36 -0.30 16 4 O -0.31 -2.73 9.80 -18.90 -0.19 -2.91 16 5 C 0.14 1.32 6.55 -38.98 -0.26 1.06 16 6 C -0.15 -1.46 9.97 -39.50 -0.39 -1.85 16 7 C -0.06 -0.57 9.40 -39.13 -0.37 -0.94 16 8 C -0.11 -1.16 5.87 -105.04 -0.62 -1.78 16 9 C -0.02 -0.28 9.42 -37.15 -0.35 -0.63 16 10 C -0.22 -2.97 8.73 -39.29 -0.34 -3.31 16 11 C 0.43 7.27 6.90 -34.36 -0.24 7.03 16 12 O -0.49 -9.49 16.11 5.10 0.08 -9.40 16 13 C -0.27 -4.96 5.88 -104.87 -0.62 -5.58 16 14 C -0.03 -0.50 9.43 -39.21 -0.37 -0.87 16 15 C -0.20 -4.11 9.97 -39.46 -0.39 -4.51 16 16 C 0.17 4.08 6.66 -38.90 -0.26 3.82 16 17 O -0.16 -4.38 9.74 0.78 0.01 -4.37 16 18 C -0.39 -10.56 9.48 30.92 0.29 -10.27 16 19 H 0.10 2.42 5.18 -52.49 -0.27 2.14 16 20 C 0.04 1.12 5.50 -17.51 -0.10 1.03 16 21 N -0.85 -23.82 13.67 55.48 0.76 -23.07 16 22 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 C -0.25 -5.40 9.15 -39.46 -0.36 -5.76 16 27 C -0.01 -0.18 9.59 -39.21 -0.38 -0.55 16 28 C -0.06 -0.49 9.79 -39.13 -0.38 -0.87 16 29 C -0.22 -1.80 8.31 -39.50 -0.33 -2.13 16 30 H 0.06 0.38 7.32 -51.93 -0.38 0.00 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 33 H 0.08 0.38 5.98 -51.93 -0.31 0.07 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.14 1.15 6.16 -52.49 -0.32 0.83 16 39 H 0.13 1.57 7.45 -52.49 -0.39 1.18 16 40 H 0.13 1.44 4.23 -52.49 -0.22 1.21 16 41 H 0.12 1.57 6.19 -52.49 -0.32 1.25 16 42 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.13 2.81 5.62 -52.49 -0.29 2.51 16 45 H 0.12 2.20 7.64 -52.49 -0.40 1.80 16 46 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 47 H 0.13 0.81 5.66 -52.49 -0.30 0.51 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -31.47 397.08 -8.94 -40.41 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.73 Total: 5.32 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -4.83 Total: -26.62 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.76 Total: -23.07 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.10 Total: -16.68 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.47 -8.94 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040139702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.984 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds