Wall clock time and date at job start Tue Mar 31 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30106 * 124.95317 * 2 1 4 4 C 1.35790 * 109.64803 * 180.27033 * 3 2 1 5 5 C 1.39742 * 133.60255 * 180.02562 * 4 3 2 6 6 C 1.36599 * 119.88531 * 180.02562 * 5 4 3 7 7 C 1.38785 * 120.66914 * 359.96653 * 6 5 4 8 8 C 1.37850 * 120.44952 * 0.02562 * 7 6 5 9 9 C 1.38834 * 119.69219 * 0.02562 * 8 7 6 10 10 N 1.36041 * 124.95050 * 180.31045 * 2 1 3 11 11 C 1.46505 * 126.34569 * 359.70732 * 10 2 1 12 12 C 1.52997 * 109.46746 * 90.02682 * 11 10 2 13 13 H 1.08997 * 109.47724 * 304.99383 * 12 11 10 14 14 O 1.42903 * 109.47412 * 64.99954 * 12 11 10 15 15 C 1.53008 * 109.47001 * 184.99701 * 12 11 10 16 16 O 1.42893 * 109.47411 * 174.99921 * 15 12 11 17 17 C 1.35671 * 117.00265 * 180.02562 * 16 15 12 18 18 C 1.39309 * 119.81613 * 359.71968 * 17 16 15 19 19 C 1.36443 * 120.18773 * 179.76307 * 18 17 16 20 20 C 1.40839 * 119.80379 * 0.51480 * 19 18 17 21 21 C 1.41221 * 120.17418 * 179.71890 * 20 19 18 22 22 H 1.07998 * 120.00226 * 24.57229 * 21 20 19 23 23 C 1.39891 * 119.99714 * 204.57611 * 21 20 19 24 24 N 1.30873 * 120.00137 * 17.92930 * 23 21 20 25 25 Si 1.86799 * 119.99645 * 197.93459 * 23 21 20 26 26 H 1.48493 * 109.47449 * 59.99651 * 25 23 21 27 27 H 1.48498 * 109.47093 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46984 * 299.99675 * 25 23 21 29 29 C 1.40833 * 119.64449 * 359.74406 * 20 19 18 30 30 C 1.36429 * 119.81117 * 359.97438 * 29 20 19 31 31 H 1.09000 * 109.46660 * 269.69367 * 1 2 3 32 32 H 1.09002 * 109.47036 * 29.68494 * 1 2 3 33 33 H 1.08996 * 109.47353 * 149.69431 * 1 2 3 34 34 H 1.08000 * 120.05783 * 359.97438 * 5 4 3 35 35 H 1.08000 * 119.66609 * 179.97438 * 6 5 4 36 36 H 1.07994 * 119.77374 * 180.02562 * 7 6 5 37 37 H 1.08004 * 120.15382 * 179.97438 * 8 7 6 38 38 H 1.09004 * 109.46696 * 210.02410 * 11 10 2 39 39 H 1.08997 * 109.47039 * 330.02650 * 11 10 2 40 40 H 0.96700 * 113.99823 * 59.99874 * 14 12 11 41 41 H 1.08995 * 109.46946 * 295.00366 * 15 12 11 42 42 H 1.09003 * 109.46482 * 55.00132 * 15 12 11 43 43 H 1.08008 * 119.90735 * 0.02761 * 18 17 16 44 44 H 1.07994 * 120.09636 * 180.25965 * 19 18 17 45 45 H 0.97001 * 119.99877 * 179.97438 * 24 23 21 46 46 H 1.07998 * 120.08916 * 179.97438 * 29 20 19 47 47 H 1.08000 * 119.90775 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5621 0.7080 -0.0060 5 6 4.7587 1.4296 -0.0083 6 6 5.9532 0.7669 -0.0153 7 6 5.9930 -0.6204 -0.0197 8 6 4.8252 -1.3528 -0.0174 9 6 3.6018 -0.6965 -0.0113 10 7 2.2863 -1.1150 -0.0060 11 6 1.8165 -2.5027 -0.0075 12 6 1.6476 -2.9823 -1.4505 13 1 0.9875 -2.2996 -1.9855 14 8 2.9230 -3.0143 -2.0943 15 6 1.0396 -4.3864 -1.4534 16 8 0.7739 -4.7877 -2.7989 17 6 0.2289 -6.0170 -2.9788 18 6 -0.0392 -6.8241 -1.8754 19 6 -0.5917 -8.0598 -2.0473 20 6 -0.8809 -8.5228 -3.3456 21 6 -1.4474 -9.8028 -3.5329 22 1 -2.0165 -10.2630 -2.7387 23 6 -1.2711 -10.4748 -4.7471 24 7 -0.3195 -10.1066 -5.5666 25 14 -2.3941 -11.8976 -5.1987 26 1 -3.7994 -11.4211 -5.2530 27 1 -2.0017 -12.4359 -6.5258 28 1 -2.2734 -12.9674 -4.1758 29 6 -0.6018 -7.7028 -4.4559 30 6 -0.0545 -6.4675 -4.2663 31 1 -0.3633 -0.0055 1.0277 32 1 -0.3633 0.8928 -0.5089 33 1 -0.3634 -0.8872 -0.5185 34 1 4.7392 2.5094 -0.0052 35 1 6.8759 1.3282 -0.0175 36 1 6.9454 -1.1295 -0.0249 37 1 4.8618 -2.4322 -0.0213 38 1 2.5450 -3.1334 0.5021 39 1 0.8590 -2.5627 0.5097 40 1 3.5626 -3.6031 -1.6710 41 1 1.7394 -5.0863 -0.9969 42 1 0.1092 -4.3805 -0.8856 43 1 0.1870 -6.4690 -0.8808 44 1 -0.8028 -8.6825 -1.1906 45 1 -0.1971 -10.5728 -6.4084 46 1 -0.8202 -8.0508 -5.4547 47 1 0.1606 -5.8375 -5.1167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040463199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:53 Heat of formation + Delta-G solvation = 3.037420 kcal Electronic energy + Delta-G solvation = -29522.259259 eV Core-core repulsion = 25442.678398 eV Total energy + Delta-G solvation = -4079.580862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.41437 -39.22611 -37.96263 -37.40122 -36.19714 -34.21394 -33.40056 -31.80734 -31.17464 -30.19146 -29.54080 -29.03122 -27.76093 -26.39973 -24.72091 -22.78767 -22.34275 -22.17127 -20.83782 -20.75226 -20.18648 -17.82717 -17.63286 -17.42976 -16.88801 -16.65189 -16.19718 -15.81888 -15.54526 -15.24296 -14.64344 -14.50746 -14.26570 -14.04425 -14.01147 -13.82326 -13.46889 -13.32536 -12.97537 -12.96124 -12.53521 -12.37923 -12.23899 -12.10040 -11.97595 -11.78084 -11.69445 -11.51717 -11.26745 -11.15999 -10.99609 -10.74367 -10.67116 -10.20431 -10.10406 -10.07450 -9.91364 -9.42303 -9.09096 -8.44713 -8.24527 -7.73047 -7.12357 -6.79174 -4.32948 0.77417 1.35838 2.23912 2.56067 2.71890 2.86777 3.03983 3.05872 3.16357 3.61383 3.73727 3.89791 3.91880 3.97405 4.20436 4.36956 4.54258 4.62861 4.74370 4.79439 4.81926 4.89451 4.93457 5.05714 5.12988 5.18473 5.26554 5.37165 5.39385 5.51042 5.56160 5.58845 5.70103 5.94404 5.95490 6.13588 6.26035 6.33770 6.35551 6.63039 6.70210 6.88629 6.90093 7.02929 7.10694 7.35420 7.40697 7.47553 7.69628 7.70977 7.92908 8.12518 8.35015 8.56751 8.82633 8.90388 10.15310 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.025296 B = 0.001775 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.631209 B =15774.993417 C =16317.352147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.283 3.717 3 N -0.496 5.496 4 C 0.045 3.955 5 C -0.068 4.068 6 C -0.130 4.130 7 C -0.106 4.106 8 C -0.101 4.101 9 C 0.059 3.941 10 N -0.480 5.480 11 C 0.080 3.920 12 C 0.095 3.905 13 H 0.111 0.889 14 O -0.539 6.539 15 C 0.041 3.959 16 O -0.315 6.315 17 C -0.014 4.014 18 C -0.166 4.166 19 C -0.200 4.200 20 C 0.089 3.911 21 C -0.463 4.463 22 H 0.077 0.923 23 C 0.075 3.925 24 N -0.797 5.797 25 Si 0.908 3.092 26 H -0.264 1.264 27 H -0.278 1.278 28 H -0.266 1.266 29 C -0.134 4.134 30 C -0.117 4.117 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.371 0.629 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.281 0.719 46 H 0.126 0.874 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 15.894 11.647 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.018 3.982 3 N -0.216 5.216 4 C -0.073 4.073 5 C -0.087 4.087 6 C -0.150 4.150 7 C -0.126 4.126 8 C -0.122 4.122 9 C -0.049 4.049 10 N -0.170 5.170 11 C -0.043 4.043 12 C 0.034 3.966 13 H 0.129 0.871 14 O -0.343 6.343 15 C -0.037 4.037 16 O -0.231 6.231 17 C -0.057 4.057 18 C -0.185 4.185 19 C -0.220 4.220 20 C 0.087 3.913 21 C -0.493 4.493 22 H 0.095 0.905 23 C -0.143 4.143 24 N -0.422 5.422 25 Si 0.733 3.267 26 H -0.188 1.188 27 H -0.203 1.203 28 H -0.191 1.191 29 C -0.153 4.153 30 C -0.136 4.136 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.218 0.782 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.144 0.856 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.403 17.088 10.879 21.245 hybrid contribution 0.069 -2.218 0.380 2.251 sum 6.472 14.870 11.258 19.743 Atomic orbital electron populations 1.20430 0.84313 1.05011 1.04204 1.23643 0.95769 0.80636 0.98138 1.70406 1.00977 1.27207 1.23043 1.19042 0.92030 0.90423 1.05849 1.19984 0.89238 0.99636 0.99874 1.20616 0.97365 0.94397 1.02657 1.20867 0.97232 0.93993 1.00485 1.19913 0.89116 0.99289 1.03890 1.18797 0.85214 0.95040 1.05885 1.45077 1.04767 1.06633 1.60500 1.22472 1.02832 0.80263 0.98780 1.22335 0.86637 0.96267 0.91317 0.87079 1.86729 1.22128 1.68732 1.56694 1.22987 0.99928 0.94562 0.86180 1.85890 1.79558 1.32894 1.24759 1.18583 1.07486 0.85269 0.94333 1.20368 1.06103 0.96721 0.95341 1.20549 1.07975 0.96480 0.96958 1.17606 0.90216 0.92893 0.90580 1.19441 1.29788 1.00876 0.99174 0.90529 1.25893 0.94171 0.98461 0.95732 1.69817 1.24816 1.38055 1.09556 0.86366 0.81293 0.80794 0.78260 1.18840 1.20337 1.19072 1.20988 1.02555 0.91775 1.00010 1.19840 1.03667 0.97079 0.92964 0.89318 0.88395 0.90027 0.85607 0.85530 0.85384 0.86300 0.88402 0.87442 0.78183 0.92576 0.92066 0.89018 0.88726 0.90758 0.85620 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.95 36.00 0.36 -0.23 16 2 C 0.28 3.20 7.85 -154.83 -1.22 1.98 16 3 N -0.50 -6.83 11.27 -8.23 -0.09 -6.92 16 4 C 0.04 0.60 7.23 -84.70 -0.61 -0.02 16 5 C -0.07 -0.75 10.05 -39.61 -0.40 -1.15 16 6 C -0.13 -1.18 9.96 -39.97 -0.40 -1.58 16 7 C -0.11 -0.95 10.03 -39.52 -0.40 -1.34 16 8 C -0.10 -1.02 10.05 -39.50 -0.40 -1.42 16 9 C 0.06 0.72 6.73 -83.99 -0.57 0.15 16 10 N -0.48 -5.17 2.76 -111.16 -0.31 -5.47 16 11 C 0.08 0.65 5.37 -4.04 -0.02 0.63 16 12 C 0.10 1.05 3.49 -26.73 -0.09 0.96 16 13 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 14 O -0.54 -6.89 13.11 -40.08 -0.53 -7.42 16 15 C 0.04 0.54 4.36 37.16 0.16 0.70 16 16 O -0.32 -6.05 10.09 -23.56 -0.24 -6.29 16 17 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 18 C -0.17 -3.55 8.96 -39.83 -0.36 -3.90 16 19 C -0.20 -4.72 9.75 -39.25 -0.38 -5.10 16 20 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 21 C -0.46 -11.99 9.04 -37.83 -0.34 -12.33 16 22 H 0.08 1.90 7.91 -52.49 -0.41 1.48 16 23 C 0.07 1.84 5.13 -17.34 -0.09 1.75 16 24 N -0.80 -20.27 10.96 55.54 0.61 -19.66 16 25 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 28 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 29 C -0.13 -3.43 8.64 -39.25 -0.34 -3.76 16 30 C -0.12 -2.77 9.92 -39.83 -0.40 -3.16 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 0.63 7.63 -51.93 -0.40 0.23 16 40 H 0.37 3.47 9.05 45.56 0.41 3.88 16 41 H 0.06 0.69 7.64 -51.93 -0.40 0.30 16 42 H 0.06 0.72 7.66 -51.93 -0.40 0.33 16 43 H 0.09 1.63 6.27 -52.48 -0.33 1.30 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 46 H 0.13 3.30 6.16 -52.49 -0.32 2.97 16 47 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -32.74 397.08 -11.54 -44.28 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.61 Total: 8.89 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -6.34 Total: -26.66 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.21 Total: -32.06 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.76 Total: -13.71 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.74 -11.54 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040463199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.321 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds