Wall clock time and date at job start Tue Mar 31 2020 05:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35888 * 116.99969 * 2 1 4 4 C 1.38873 * 119.90366 * 179.97438 * 3 2 1 5 5 C 1.37848 * 120.09562 * 179.97438 * 4 3 2 6 6 C 1.39674 * 119.90405 * 359.97438 * 5 4 3 7 7 C 1.47707 * 120.09507 * 179.97438 * 6 5 4 8 8 C 1.36288 * 126.68714 * 5.00980 * 7 6 5 9 9 N 1.33577 * 108.29113 * 179.73661 * 8 7 6 10 10 C 1.31562 * 109.66019 * 0.43248 * 9 8 7 11 11 S 1.76201 * 125.68866 * 179.83100 * 10 9 8 12 12 C 1.76199 * 99.99986 * 359.68723 * 11 10 9 13 13 H 1.08002 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.38570 * 119.99886 * 179.72297 * 12 11 10 15 15 N 1.31694 * 119.99760 * 0.27772 * 14 12 11 16 16 Si 1.86803 * 120.00036 * 180.27923 * 14 12 11 17 17 H 1.48496 * 109.47141 * 59.99814 * 16 14 12 18 18 H 1.48497 * 109.46782 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 300.00091 * 16 14 12 20 20 N 1.36631 * 108.61720 * 359.56327 * 10 9 8 21 21 C 1.40109 * 126.59954 * 180.30087 * 20 10 9 22 22 C 1.38849 * 120.06988 * 244.70460 * 21 20 10 23 23 C 1.38113 * 119.93465 * 179.78897 * 22 21 20 24 24 C 1.38288 * 120.06784 * 0.48328 * 23 22 21 25 25 C 1.38294 * 120.13108 * 359.74351 * 24 23 22 26 26 C 1.38110 * 120.06760 * 0.02605 * 25 24 23 27 27 C 1.39672 * 119.80766 * 0.25379 * 6 5 4 28 28 C 1.37848 * 119.90318 * 359.51425 * 27 6 5 29 29 H 1.08996 * 109.46952 * 60.00456 * 1 2 3 30 30 H 1.09006 * 109.46909 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46995 * 300.00015 * 1 2 3 32 32 H 1.08002 * 119.94998 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.04487 * 180.02562 * 5 4 3 34 34 H 1.07992 * 125.85111 * 359.97438 * 8 7 6 35 35 H 0.97005 * 119.99763 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.03187 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.97296 * 180.22690 * 23 22 21 38 38 H 1.07994 * 119.93670 * 179.72718 * 24 23 22 39 39 H 1.07998 * 119.95941 * 180.02562 * 25 24 23 40 40 H 1.08007 * 120.03223 * 180.02562 * 26 25 24 41 41 H 1.07997 * 120.05293 * 179.71946 * 27 6 5 42 42 H 1.08004 * 119.95333 * 180.25345 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4329 1.2811 0.0005 5 6 4.0628 2.5073 0.0000 6 6 3.3041 3.6799 -0.0016 7 6 3.9747 4.9960 -0.0016 8 6 5.3145 5.2272 -0.0956 9 7 5.5153 6.5474 -0.0652 10 6 4.3613 7.1680 0.0535 11 16 4.1370 8.9136 0.1390 12 6 5.8140 9.4433 0.0309 13 1 6.6059 8.7144 -0.0588 14 6 6.1164 10.7954 0.0547 15 7 5.1508 11.6842 0.1636 16 14 7.8937 11.3572 -0.0677 17 1 8.4761 10.8818 -1.3483 18 1 7.9484 12.8404 -0.0188 19 1 8.6696 10.7960 1.0674 20 7 3.3655 6.2334 0.0935 21 6 1.9913 6.4813 0.2080 22 6 1.2995 6.0576 1.3349 23 6 -0.0543 6.3073 1.4469 24 6 -0.7228 6.9698 0.4337 25 6 -0.0374 7.3889 -0.6920 26 6 1.3173 7.1463 -0.8076 27 6 1.9094 3.6045 0.0027 28 6 1.2877 2.3742 -0.0016 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 4.0188 0.3739 0.0014 33 1 5.1415 2.5610 0.0000 34 1 6.0819 4.4725 -0.1838 35 1 5.3625 12.6307 0.1807 36 1 1.8201 5.5359 2.1244 37 1 -0.5923 5.9813 2.3248 38 1 -1.7822 7.1600 0.5215 39 1 -0.5622 7.9064 -1.4814 40 1 1.8521 7.4742 -1.6868 41 1 1.3188 4.5087 0.0060 42 1 0.2093 2.3149 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044085323.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:30 Heat of formation + Delta-G solvation = 81.191057 kcal Electronic energy + Delta-G solvation = -27448.048315 eV Core-core repulsion = 23678.776226 eV Total energy + Delta-G solvation = -3769.272089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.099 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58751 -39.98989 -38.95114 -37.36264 -33.75256 -32.60480 -31.52020 -31.19760 -30.82388 -29.11994 -28.07511 -26.95139 -25.58486 -23.34156 -23.04546 -22.40161 -22.33690 -20.51534 -19.93971 -18.56083 -18.18452 -17.25673 -16.32198 -16.14830 -15.88430 -15.58039 -15.40121 -14.90109 -14.81913 -14.48507 -14.01546 -13.96201 -13.83464 -13.49257 -13.42733 -13.27064 -12.99044 -12.79222 -12.62550 -12.11511 -11.93795 -11.57434 -11.35737 -11.24734 -11.16413 -11.08231 -11.01270 -10.84039 -10.17462 -9.70997 -9.48276 -9.27438 -9.08986 -8.96652 -8.92450 -8.82800 -8.46314 -7.75315 -6.46315 -6.42180 -4.13725 0.97444 1.22293 1.28995 1.38918 2.58899 2.61815 3.14368 3.23661 3.24346 3.30032 3.40886 3.62037 3.68262 4.02892 4.05553 4.70737 4.78671 4.80787 4.87841 4.89242 4.91539 4.93971 5.01241 5.06908 5.12617 5.20790 5.32131 5.34143 5.38138 5.48278 5.55390 5.58846 5.75083 5.90251 5.94396 6.06922 6.18791 6.27856 6.31923 6.34029 6.43109 6.53177 6.68540 6.78210 6.92210 7.23268 7.29616 7.62016 7.67245 8.41834 8.65055 9.09836 10.66153 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.003131 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.296993 B = 8939.527980 C =10631.982479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.108 3.892 4 C -0.142 4.142 5 C -0.075 4.075 6 C -0.018 4.018 7 C -0.026 4.026 8 C 0.021 3.979 9 N -0.492 5.492 10 C 0.223 3.777 11 S 0.128 5.872 12 C -0.528 4.528 13 H 0.105 0.895 14 C 0.073 3.927 15 N -0.880 5.880 16 Si 0.932 3.068 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.270 1.270 20 N -0.420 5.420 21 C 0.134 3.866 22 C -0.107 4.107 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.106 4.106 26 C -0.101 4.101 27 C -0.102 4.102 28 C -0.195 4.195 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.273 0.727 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.485 -17.100 0.110 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.063 3.937 4 C -0.160 4.160 5 C -0.095 4.095 6 C -0.020 4.020 7 C -0.139 4.139 8 C -0.132 4.132 9 N -0.213 5.213 10 C -0.142 4.142 11 S 0.364 5.636 12 C -0.677 4.677 13 H 0.123 0.877 14 C -0.136 4.136 15 N -0.515 5.515 16 Si 0.757 3.243 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.195 1.195 20 N -0.106 5.106 21 C 0.043 3.957 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.214 4.214 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.183 0.817 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.733 -15.899 0.181 21.010 hybrid contribution 1.135 -0.606 -0.104 1.291 sum -12.598 -16.505 0.077 20.764 Atomic orbital electron populations 1.23012 0.78728 1.03623 1.01327 1.86036 1.21116 1.27194 1.89074 1.19064 0.92348 0.83927 0.98376 1.20258 0.91183 0.98294 1.06294 1.20877 0.99905 0.90102 0.98572 1.17831 0.92315 0.89861 1.01946 1.19378 0.92688 0.83906 1.17940 1.22354 0.92549 0.93881 1.04439 1.70732 1.23257 1.04591 1.22690 1.27148 0.83616 1.00441 1.03006 1.83570 1.14018 0.80185 1.85803 1.23166 0.91873 0.95035 1.57609 0.87716 1.25062 0.99528 0.95191 0.93770 1.69980 1.32370 1.02219 1.46963 0.85991 0.81808 0.77072 0.79390 1.19532 1.20868 1.19539 1.42780 1.03751 1.05516 1.58541 1.17571 0.81847 1.01005 0.95298 1.21190 0.94976 1.00295 0.96227 1.20995 0.93526 0.99456 0.99290 1.21230 1.00150 0.98143 0.93902 1.21055 0.93453 0.99539 0.98450 1.21303 0.94648 0.97879 0.98210 1.21620 0.94106 0.98040 0.98305 1.21072 0.99701 0.92050 1.08563 0.92770 0.88473 0.92758 0.85130 0.84855 0.81682 0.91717 0.85475 0.85347 0.85568 0.85104 0.84898 0.84674 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.57 10.49 -19.39 -0.20 -3.77 16 3 C 0.11 1.33 6.69 -39.11 -0.26 1.07 16 4 C -0.14 -1.72 9.97 -39.49 -0.39 -2.11 16 5 C -0.08 -0.99 9.57 -39.19 -0.38 -1.37 16 6 C -0.02 -0.27 5.87 -104.96 -0.62 -0.89 16 7 C -0.03 -0.47 6.81 -81.81 -0.56 -1.03 16 8 C 0.02 0.40 11.26 -17.49 -0.20 0.20 16 9 N -0.49 -11.70 9.96 -13.00 -0.13 -11.83 16 10 C 0.22 5.22 7.89 -88.02 -0.69 4.52 16 11 S 0.13 3.28 21.33 -107.50 -2.29 0.99 16 12 C -0.53 -14.93 9.36 30.85 0.29 -14.64 16 13 H 0.10 3.03 6.88 -52.49 -0.36 2.66 16 14 C 0.07 2.01 5.49 -17.49 -0.10 1.92 16 15 N -0.88 -24.90 13.22 55.48 0.73 -24.16 16 16 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 N -0.42 -8.30 2.85 -56.89 -0.16 -8.46 16 21 C 0.13 2.25 3.67 -83.62 -0.31 1.95 16 22 C -0.11 -1.54 7.14 -39.40 -0.28 -1.82 16 23 C -0.11 -1.29 10.03 -39.61 -0.40 -1.69 16 24 C -0.12 -1.23 10.04 -39.54 -0.40 -1.63 16 25 C -0.11 -1.29 10.04 -39.61 -0.40 -1.69 16 26 C -0.10 -1.56 9.75 -39.40 -0.38 -1.94 16 27 C -0.10 -1.44 8.66 -39.19 -0.34 -1.78 16 28 C -0.20 -2.37 9.02 -39.49 -0.36 -2.73 16 29 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.51 7.06 -52.48 -0.37 1.14 16 34 H 0.17 2.61 7.31 -52.49 -0.38 2.22 16 35 H 0.27 7.22 8.32 -40.82 -0.34 6.88 16 36 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.13 2.17 8.06 -52.48 -0.42 1.74 16 41 H 0.14 1.92 3.69 -52.49 -0.19 1.73 16 42 H 0.12 1.22 6.28 -52.48 -0.33 0.89 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -32.70 371.11 -10.78 -43.48 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.53 Total: 4.20 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -4.77 Total: -22.46 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.44 Total: -44.46 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.29 Total: 0.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.70 -10.78 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085323.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.671 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds