Wall clock time and date at job start Tue Mar 31 2020 05:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39291 * 125.81681 * 2 1 4 4 C 1.38664 * 133.33246 * 0.05944 * 3 2 1 5 5 C 1.38106 * 119.84687 * 179.97438 * 4 3 2 6 6 C 1.38439 * 120.28450 * 0.02562 * 5 4 3 7 7 C 1.38109 * 120.28351 * 359.95115 * 6 5 4 8 8 C 1.38656 * 119.85211 * 0.04881 * 7 6 5 9 9 N 1.39284 * 133.33614 * 179.97438 * 8 7 6 10 10 C 1.46495 * 125.81946 * 359.95419 * 9 8 7 11 11 N 1.46907 * 109.46789 * 100.21396 * 10 9 8 12 12 C 1.46903 * 110.99647 * 151.00170 * 11 10 9 13 13 C 1.50703 * 109.47204 * 288.48503 * 12 11 10 14 14 H 1.08003 * 119.99925 * 355.43529 * 13 12 11 15 15 C 1.37872 * 119.99859 * 175.42990 * 13 12 11 16 16 N 1.31518 * 119.99974 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00123 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46913 * 90.00325 * 17 15 13 19 19 H 1.48504 * 109.47143 * 210.00069 * 17 15 13 20 20 H 1.48501 * 109.47204 * 329.99997 * 17 15 13 21 21 C 1.46894 * 111.00025 * 274.95136 * 11 10 9 22 22 C 1.50695 * 109.47207 * 170.00062 * 21 11 10 23 23 C 1.38678 * 120.41810 * 90.00201 * 22 21 11 24 24 C 1.38628 * 118.41947 * 179.97438 * 23 22 21 25 25 C 1.38227 * 119.16512 * 0.25239 * 24 23 22 26 26 N 1.31866 * 120.75779 * 359.50249 * 25 24 23 27 27 C 1.31882 * 121.72559 * 0.48569 * 26 25 24 28 28 C 1.34639 * 125.81961 * 180.32402 * 2 1 3 29 29 O 1.21685 * 125.15946 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47185 * 89.99835 * 1 2 3 31 31 H 1.08994 * 109.46491 * 209.99747 * 1 2 3 32 32 H 1.09001 * 109.46799 * 330.00028 * 1 2 3 33 33 H 1.07997 * 120.07545 * 359.94704 * 4 3 2 34 34 H 1.08001 * 119.85943 * 180.02562 * 5 4 3 35 35 H 1.08006 * 119.85671 * 179.97438 * 6 5 4 36 36 H 1.08001 * 120.07386 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47038 * 340.21570 * 10 9 8 38 38 H 1.08996 * 109.47110 * 220.21039 * 10 9 8 39 39 H 1.08998 * 109.47510 * 48.48963 * 12 11 10 40 40 H 1.09002 * 109.47180 * 168.48922 * 12 11 10 41 41 H 0.96992 * 120.00072 * 180.02562 * 16 15 13 42 42 H 1.09007 * 109.46963 * 50.00072 * 21 11 10 43 43 H 1.09001 * 109.47522 * 290.00436 * 21 11 10 44 44 H 1.07996 * 120.79020 * 359.95792 * 23 22 21 45 45 H 1.08001 * 120.41841 * 179.97438 * 24 23 22 46 46 H 1.07991 * 119.62350 * 179.74356 * 25 24 23 47 47 H 1.08004 * 119.61451 * 179.75373 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2802 1.1295 0.0000 4 6 2.0191 2.4913 0.0010 5 6 3.0662 3.3919 0.0012 6 6 4.3750 2.9408 -0.0001 7 6 4.6448 1.5863 -0.0007 8 6 3.6002 0.6745 -0.0009 9 7 3.5463 -0.7173 -0.0019 10 6 4.7001 -1.6200 -0.0040 11 7 4.9361 -2.1162 1.3585 12 6 5.5512 -3.4500 1.3338 13 6 4.5329 -4.4646 0.8812 14 1 3.5105 -4.1630 0.7074 15 6 4.9065 -5.7777 0.6890 16 7 4.0179 -6.6630 0.2936 17 14 6.6747 -6.2994 0.9902 18 1 6.8319 -6.7217 2.4052 19 1 7.0155 -7.4337 0.0943 20 1 7.5821 -5.1577 0.7105 21 6 5.7573 -1.1719 2.1277 22 6 5.7743 -1.5857 3.5767 23 6 6.7486 -2.4527 4.0479 24 6 6.7255 -2.8054 5.3884 25 6 5.7360 -2.2890 6.2038 26 7 4.8280 -1.4630 5.7221 27 6 4.8196 -1.1055 4.4527 28 6 2.2530 -1.0917 -0.0062 29 8 1.8564 -2.2421 -0.0122 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 0.9994 2.8469 0.0013 34 1 2.8631 4.4526 0.0025 35 1 5.1886 3.6511 -0.0004 36 1 5.6672 1.2381 -0.0013 37 1 5.5817 -1.0820 -0.3525 38 1 4.5019 -2.4615 -0.6678 39 1 6.3944 -3.4485 0.6431 40 1 5.9010 -3.7074 2.3335 41 1 4.2806 -7.5869 0.1588 42 1 5.3366 -0.1700 2.0408 43 1 6.7750 -1.1737 1.7374 44 1 7.5072 -2.8441 3.3863 45 1 7.4685 -3.4788 5.7895 46 1 5.7086 -2.5621 7.2483 47 1 4.0574 -0.4298 4.0936 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044894844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:34 Heat of formation + Delta-G solvation = 93.219756 kcal Electronic energy + Delta-G solvation = -31679.446951 eV Core-core repulsion = 27636.069440 eV Total energy + Delta-G solvation = -4043.377511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19282 -39.97412 -38.11575 -37.29187 -35.54013 -34.78776 -32.74839 -32.10714 -31.36314 -30.45273 -29.37041 -28.22246 -27.56624 -25.81433 -23.94519 -23.31945 -22.36234 -22.25413 -21.85267 -20.75306 -19.79954 -17.79252 -17.37618 -16.85835 -16.83170 -16.41463 -16.05819 -15.71900 -15.34414 -15.21732 -14.69330 -14.25872 -14.13968 -14.10987 -14.01556 -13.86035 -13.41386 -13.14001 -13.01003 -12.87316 -12.81641 -12.60882 -12.40341 -12.33953 -12.16208 -11.99854 -11.40708 -11.17006 -11.11742 -10.74034 -10.52869 -10.37790 -10.34942 -10.03400 -9.92370 -9.55021 -9.29667 -9.15289 -8.75205 -8.55533 -8.34048 -7.72177 -7.54086 -6.00231 -3.98598 1.21650 1.34583 1.41376 1.52953 2.40357 3.24208 3.28827 3.31779 3.34860 3.46859 3.71198 4.00908 4.40251 4.50850 4.64565 4.72286 4.80924 4.89737 4.98686 5.05691 5.06670 5.18163 5.21001 5.26067 5.27208 5.28618 5.35492 5.45567 5.54182 5.55705 5.65790 5.69752 5.77771 5.91720 5.98244 6.00442 6.10077 6.32501 6.39944 6.43927 6.49255 6.58657 6.64005 6.72787 6.74103 6.93623 6.98591 7.44172 7.62659 7.67378 7.83773 8.20685 8.62407 8.67989 9.24183 9.59033 11.12806 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.008640 B = 0.004419 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.036655 B = 6334.898623 C = 8057.663749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.551 5.551 3 C 0.091 3.909 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.113 4.113 8 C 0.102 3.898 9 N -0.527 5.527 10 C 0.304 3.696 11 N -0.532 5.532 12 C 0.164 3.836 13 C -0.513 4.513 14 H 0.096 0.904 15 C 0.072 3.928 16 N -0.893 5.893 17 Si 0.865 3.135 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.268 1.268 21 C 0.093 3.907 22 C -0.113 4.113 23 C -0.064 4.064 24 C -0.175 4.175 25 C 0.091 3.909 26 N -0.489 5.489 27 C 0.119 3.881 28 C 0.681 3.319 29 O -0.516 6.516 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.060 0.940 38 H 0.120 0.880 39 H -0.007 1.007 40 H 0.034 0.966 41 H 0.262 0.738 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.151 0.849 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 20.791 1.710 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.274 5.274 3 C -0.011 4.011 4 C -0.130 4.130 5 C -0.140 4.140 6 C -0.134 4.134 7 C -0.134 4.134 8 C -0.001 4.001 9 N -0.249 5.249 10 C 0.094 3.906 11 N -0.257 5.257 12 C 0.038 3.962 13 C -0.551 4.551 14 H 0.113 0.887 15 C -0.130 4.130 16 N -0.532 5.532 17 Si 0.692 3.308 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.036 4.036 22 C -0.115 4.115 23 C -0.091 4.091 24 C -0.195 4.195 25 C -0.066 4.066 26 N -0.197 5.197 27 C -0.038 4.038 28 C 0.383 3.617 29 O -0.387 6.387 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.078 0.922 38 H 0.137 0.863 39 H 0.011 0.989 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.168 0.832 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.052 19.814 2.440 19.991 hybrid contribution 2.285 -0.882 -0.716 2.552 sum 3.337 18.932 1.725 19.301 Atomic orbital electron populations 1.21638 0.75475 1.03998 1.02636 1.45147 1.06926 1.04722 1.70654 1.18109 0.88494 0.89270 1.05191 1.19986 0.99938 0.88671 1.04446 1.20738 0.91975 0.98993 1.02333 1.20761 0.96833 0.94153 1.01653 1.20039 0.97040 0.91817 1.04534 1.18213 0.94049 0.84108 1.03692 1.45601 1.07172 1.03803 1.68356 1.21918 0.84163 0.92433 0.92097 1.61546 1.47907 1.03516 1.12765 1.20307 0.94441 0.84664 0.96758 1.21191 0.98009 0.91531 1.44348 0.88652 1.24884 0.96519 0.96549 0.95037 1.69911 1.33591 1.02867 1.46798 0.87037 0.86498 0.78657 0.78596 1.20195 1.21124 1.19327 1.21057 0.96087 0.96611 0.89800 1.20690 0.96045 0.98193 0.96606 1.21510 0.97738 0.94464 0.95353 1.22058 1.00916 1.01857 0.94636 1.22651 0.90625 0.93335 1.00025 1.67661 1.23935 1.12798 1.15335 1.22497 0.95771 0.97234 0.88276 1.16054 0.80753 0.84470 0.80403 1.91168 1.75895 1.16274 1.55318 0.91737 0.89488 0.90425 0.85771 0.85533 0.85501 0.85750 0.92184 0.86257 0.98913 0.94847 0.92754 0.90513 0.94283 0.85235 0.85129 0.83209 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 11.00 59.85 0.66 1.86 16 2 N -0.55 -8.54 3.19 -126.32 -0.40 -8.94 16 3 C 0.09 1.24 6.83 -83.79 -0.57 0.66 16 4 C -0.11 -1.10 10.02 -39.47 -0.40 -1.50 16 5 C -0.12 -1.04 10.03 -39.56 -0.40 -1.43 16 6 C -0.11 -1.02 10.03 -39.55 -0.40 -1.42 16 7 C -0.11 -1.25 9.41 -39.47 -0.37 -1.63 16 8 C 0.10 1.46 6.46 -83.80 -0.54 0.92 16 9 N -0.53 -9.32 3.03 -122.20 -0.37 -9.69 16 10 C 0.30 5.61 5.61 -63.31 -0.36 5.25 16 11 N -0.53 -10.66 4.54 -241.43 -1.10 -11.75 16 12 C 0.16 3.80 3.61 -4.97 -0.02 3.78 16 13 C -0.51 -14.71 8.84 -34.44 -0.30 -15.02 16 14 H 0.10 3.16 7.70 -52.48 -0.40 2.76 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.89 -28.04 13.96 55.43 0.77 -27.26 16 17 Si 0.86 21.09 27.56 -169.99 -4.69 16.40 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.10 6.41 56.52 0.36 -5.73 16 21 C 0.09 1.47 4.97 -4.98 -0.02 1.45 16 22 C -0.11 -1.87 4.94 -104.48 -0.52 -2.39 16 23 C -0.06 -1.01 8.02 -39.27 -0.31 -1.32 16 24 C -0.17 -2.49 10.11 -39.44 -0.40 -2.89 16 25 C 0.09 1.33 11.18 -17.54 -0.20 1.13 16 26 N -0.49 -8.25 10.36 -13.25 -0.14 -8.39 16 27 C 0.12 2.01 10.86 -17.55 -0.19 1.82 16 28 C 0.68 13.60 8.45 -87.16 -0.74 12.86 16 29 O -0.52 -12.90 17.21 5.20 0.09 -12.81 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.12 1.22 7.87 -52.49 -0.41 0.80 16 37 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 38 H 0.12 2.59 7.03 -51.93 -0.37 2.23 16 39 H -0.01 -0.15 6.79 -51.93 -0.35 -0.51 16 40 H 0.03 0.78 4.84 -51.93 -0.25 0.53 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.08 1.11 7.16 -51.92 -0.37 0.73 16 43 H 0.04 0.56 8.07 -51.93 -0.42 0.14 16 44 H 0.13 1.91 7.77 -52.49 -0.41 1.51 16 45 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.15 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -36.74 392.05 -11.44 -48.18 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.35 Total: 4.20 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -5.17 Total: 4.16 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -1.23 Total: -66.04 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.69 Total: 16.40 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.74 -11.44 -48.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044894844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.399 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds