Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38280 * 119.97624 * 2 1 4 4 C 1.38252 * 120.11492 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.97108 * 179.97438 * 4 3 2 6 6 C 1.38162 * 120.05000 * 359.67881 * 4 3 2 7 7 C 1.50701 * 120.02897 * 180.29544 * 6 4 3 8 8 C 1.38709 * 119.94521 * 0.61882 * 6 4 3 9 9 O 1.35902 * 120.05548 * 179.67666 * 8 6 4 10 10 C 1.42905 * 117.00001 * 174.09608 * 9 8 6 11 11 H 1.09001 * 109.47149 * 324.14770 * 10 9 8 12 12 C 1.53002 * 109.47261 * 84.15005 * 10 9 8 13 13 C 1.50706 * 109.46890 * 204.15236 * 10 9 8 14 14 O 1.21275 * 120.00116 * 354.99629 * 13 10 9 15 15 N 1.34772 * 119.99657 * 175.00021 * 13 10 9 16 16 C 1.39243 * 119.99989 * 185.23905 * 15 13 10 17 17 C 1.39479 * 119.83598 * 212.49159 * 16 15 13 18 18 C 1.36373 * 120.17048 * 179.76253 * 17 16 15 19 19 C 1.40876 * 119.82520 * 0.50914 * 18 17 16 20 20 C 1.41151 * 120.15947 * 179.72266 * 19 18 17 21 21 H 1.08004 * 119.99643 * 205.43239 * 20 19 18 22 22 C 1.39902 * 120.00400 * 25.43245 * 20 19 18 23 23 N 1.30877 * 119.99845 * 15.72796 * 22 20 19 24 24 Si 1.86796 * 120.00101 * 195.72329 * 22 20 19 25 25 H 1.48502 * 109.47195 * 90.00438 * 24 22 20 26 26 H 1.48500 * 109.47178 * 210.00078 * 24 22 20 27 27 H 1.48499 * 109.47143 * 330.00044 * 24 22 20 28 28 C 1.40866 * 119.66986 * 359.74778 * 19 18 17 29 29 C 1.36376 * 119.83325 * 359.97438 * 28 19 18 30 30 C 1.38128 * 119.97009 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46983 * 269.98314 * 1 2 3 32 32 H 1.09004 * 109.47074 * 29.97344 * 1 2 3 33 33 H 1.08995 * 109.47465 * 149.97814 * 1 2 3 34 34 H 1.08004 * 119.94623 * 0.02562 * 3 2 1 35 35 H 1.08996 * 109.46856 * 90.00203 * 5 4 3 36 36 H 1.09007 * 109.46352 * 210.00006 * 5 4 3 37 37 H 1.09000 * 109.47452 * 329.99820 * 5 4 3 38 38 H 1.08997 * 109.47348 * 270.32814 * 7 6 4 39 39 H 1.09004 * 109.46604 * 30.32199 * 7 6 4 40 40 H 1.08995 * 109.47656 * 150.32092 * 7 6 4 41 41 H 1.08997 * 109.46787 * 179.97438 * 12 10 9 42 42 H 1.08997 * 109.46829 * 60.00096 * 12 10 9 43 43 H 1.08997 * 109.46820 * 300.00035 * 12 10 9 44 44 H 0.96999 * 120.00137 * 5.24138 * 15 13 10 45 45 H 1.08004 * 119.90904 * 0.02562 * 17 16 15 46 46 H 1.08000 * 120.08732 * 180.25831 * 18 17 16 47 47 H 0.96997 * 119.99940 * 179.97438 * 23 22 20 48 48 H 1.08007 * 120.08255 * 179.97438 * 28 19 18 49 49 H 1.07999 * 119.91464 * 179.97438 * 29 28 19 50 50 H 1.08004 * 120.02625 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5804 1.2012 -0.0005 5 6 4.3301 2.5085 -0.0011 6 6 4.2751 0.0070 0.0056 7 6 5.7821 0.0112 0.0118 8 6 3.5845 -1.1959 -0.0006 9 8 4.2656 -2.3719 -0.0012 10 6 3.4943 -3.5685 0.1232 11 1 2.6517 -3.3898 0.7912 12 6 2.9740 -3.9854 -1.2539 13 6 4.3585 -4.6668 0.6874 14 8 5.5415 -4.4735 0.8714 15 7 3.8165 -5.8637 0.9873 16 6 4.5887 -6.8414 1.6091 17 6 4.3533 -8.1889 1.3366 18 6 5.1087 -9.1520 1.9380 19 6 6.1219 -8.7832 2.8446 20 6 6.9041 -9.7745 3.4755 21 1 7.3696 -9.5696 4.4283 22 6 7.0763 -11.0223 2.8668 23 7 6.7861 -11.1780 1.6001 24 14 7.7205 -12.4660 3.8618 25 1 6.5795 -13.1972 4.4689 26 1 8.4780 -13.3819 2.9716 27 1 8.6162 -11.9665 4.9358 28 6 6.3501 -7.4205 3.1188 29 6 5.5903 -6.4685 2.5053 30 6 2.1970 -1.1966 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5141 34 1 1.6566 2.1324 0.0004 35 1 4.5112 2.8238 1.0264 36 1 5.2827 2.3807 -0.5153 37 1 3.7386 3.2663 -0.5149 38 1 6.1497 0.0152 -1.0143 39 1 6.1408 0.9008 0.5296 40 1 6.1460 -0.8792 0.5245 41 1 2.3861 -4.8983 -1.1590 42 1 3.8166 -4.1641 -1.9218 43 1 2.3490 -3.1910 -1.6618 44 1 2.8886 -6.0441 0.7701 45 1 3.5735 -8.4701 0.6443 46 1 4.9279 -10.1948 1.7228 47 1 6.9059 -12.0430 1.1780 48 1 7.1249 -7.1303 3.8131 49 1 5.7639 -5.4234 2.7149 50 1 1.6569 -2.1319 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044901202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -40.301257 kcal Electronic energy + Delta-G solvation = -30153.999571 eV Core-core repulsion = 26110.653836 eV Total energy + Delta-G solvation = -4043.345735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.84358 -39.65934 -38.07873 -37.03369 -34.58648 -34.49723 -33.20891 -32.20370 -30.91199 -29.59001 -29.41038 -28.83413 -27.35015 -25.55337 -25.02180 -24.16155 -22.20323 -21.39521 -20.93569 -20.47075 -19.45159 -17.73790 -17.52860 -17.25231 -16.30897 -15.92490 -15.67120 -15.66156 -15.19874 -14.68340 -14.37129 -14.14037 -13.98649 -13.84574 -13.59344 -13.31325 -13.04520 -13.02412 -12.98933 -12.86921 -12.74514 -12.52323 -12.30964 -12.10743 -12.04800 -11.89186 -11.85857 -11.60881 -11.39099 -11.35755 -11.15258 -11.03847 -10.89252 -10.81655 -10.75199 -10.00300 -9.62144 -9.41049 -9.14335 -8.94170 -8.66911 -8.16623 -7.57645 -7.01150 -6.76155 -4.33133 1.11141 1.28447 2.46931 2.73763 2.95241 3.05359 3.07707 3.09731 3.32301 3.50328 3.81857 3.91382 4.46945 4.54802 4.58567 4.60509 4.79860 4.80847 4.86761 4.96011 5.00710 5.09469 5.28290 5.30942 5.34069 5.37631 5.41824 5.49396 5.54500 5.63307 5.65238 5.67429 5.71407 5.85795 5.88989 6.15750 6.17893 6.23026 6.35823 6.39506 6.45962 6.64668 6.71889 6.87604 7.01399 7.14559 7.23885 7.31016 7.56500 7.67630 7.84912 8.00511 8.22113 8.25239 8.55933 8.67928 8.85795 8.95897 10.15671 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.023401 B = 0.001869 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.263252 B =14978.958820 C =15630.130533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.159 4.159 4 C -0.048 4.048 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.109 4.109 8 C 0.140 3.860 9 O -0.279 6.279 10 C 0.069 3.931 11 H 0.094 0.906 12 C -0.176 4.176 13 C 0.501 3.499 14 O -0.506 6.506 15 N -0.644 5.644 16 C -0.008 4.008 17 C -0.112 4.112 18 C -0.153 4.153 19 C 0.105 3.895 20 C -0.455 4.455 21 H 0.079 0.921 22 C 0.073 3.927 23 N -0.793 5.793 24 Si 0.911 3.089 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.214 4.214 29 C -0.077 4.077 30 C -0.216 4.216 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.395 0.605 45 H 0.091 0.909 46 H 0.123 0.877 47 H 0.281 0.719 48 H 0.096 0.904 49 H 0.102 0.898 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 19.568 -5.599 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.177 4.177 4 C -0.048 4.048 5 C -0.172 4.172 6 C -0.121 4.121 7 C -0.165 4.165 8 C 0.094 3.906 9 O -0.191 6.191 10 C 0.009 3.991 11 H 0.112 0.888 12 C -0.233 4.233 13 C 0.286 3.714 14 O -0.381 6.381 15 N -0.289 5.289 16 C -0.100 4.100 17 C -0.132 4.132 18 C -0.172 4.172 19 C 0.102 3.898 20 C -0.485 4.485 21 H 0.097 0.903 22 C -0.145 4.145 23 N -0.419 5.419 24 Si 0.736 3.264 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.234 4.234 29 C -0.096 4.096 30 C -0.234 4.234 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.228 0.772 45 H 0.109 0.891 46 H 0.141 0.859 47 H 0.092 0.908 48 H 0.114 0.886 49 H 0.120 0.880 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.355 19.519 -5.671 23.283 hybrid contribution -0.476 -0.940 0.137 1.063 sum -11.831 18.578 -5.534 22.710 Atomic orbital electron populations 1.20798 0.91092 1.02763 1.02434 1.19624 0.95839 0.92430 0.97230 1.20748 0.93300 0.97411 1.06217 1.19556 0.93459 0.94162 0.97660 1.20824 1.00247 0.93563 1.02517 1.19094 0.96615 0.89696 1.06647 1.20657 0.90423 1.03145 1.02289 1.18846 0.90283 0.85719 0.95731 1.86230 1.34495 1.11210 1.87126 1.22219 0.93921 0.84326 0.98676 0.88809 1.22337 1.02596 1.02652 0.95725 1.19926 0.88389 0.83449 0.79659 1.90735 1.15318 1.80607 1.51413 1.42828 1.13901 1.12880 1.59242 1.17124 1.02458 0.86797 1.03613 1.20201 1.00851 0.91310 1.00866 1.20930 0.96339 0.98482 1.01486 1.17686 0.90164 0.91402 0.90517 1.19585 1.26897 0.96302 1.05693 0.90312 1.25942 0.93822 1.00129 0.94585 1.69836 1.36492 1.25333 1.10202 0.86264 0.79517 0.80291 0.80378 1.19279 1.20305 1.18587 1.20662 1.03210 0.92876 1.06699 1.20266 0.95792 0.98354 0.95235 1.21127 0.92827 0.98933 1.10535 0.91017 0.91457 0.91525 0.86155 0.90924 0.91027 0.91462 0.91486 0.91685 0.90525 0.90269 0.90526 0.90844 0.77175 0.89116 0.85881 0.90835 0.88620 0.87974 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.05 -0.50 5.88 -104.65 -0.62 -1.11 16 3 C -0.16 -1.52 9.35 -39.56 -0.37 -1.89 16 4 C -0.05 -0.50 5.88 -104.64 -0.62 -1.11 16 5 C -0.12 -0.86 9.18 36.01 0.33 -0.53 16 6 C -0.12 -1.48 5.89 -104.47 -0.62 -2.10 16 7 C -0.11 -1.26 8.96 36.01 0.32 -0.94 16 8 C 0.14 1.86 6.56 -39.22 -0.26 1.60 16 9 O -0.28 -4.25 8.39 -39.29 -0.33 -4.58 16 10 C 0.07 0.92 2.64 -27.88 -0.07 0.84 16 11 H 0.09 1.03 6.37 -51.93 -0.33 0.70 16 12 C -0.18 -1.84 9.09 37.16 0.34 -1.50 16 13 C 0.50 8.98 6.91 -10.98 -0.08 8.91 16 14 O -0.51 -11.53 14.12 -14.30 -0.20 -11.74 16 15 N -0.64 -11.17 5.28 -9.74 -0.05 -11.22 16 16 C -0.01 -0.18 6.30 -83.57 -0.53 -0.70 16 17 C -0.11 -2.53 9.89 -39.79 -0.39 -2.92 16 18 C -0.15 -3.88 8.63 -39.26 -0.34 -4.22 16 19 C 0.11 2.81 5.57 -106.80 -0.60 2.22 16 20 C -0.46 -12.04 9.04 -37.85 -0.34 -12.39 16 21 H 0.08 2.01 7.89 -52.48 -0.41 1.59 16 22 C 0.07 1.81 5.17 -17.34 -0.09 1.72 16 23 N -0.79 -20.33 10.88 55.55 0.60 -19.73 16 24 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 28 C -0.21 -5.48 9.74 -39.26 -0.38 -5.86 16 29 C -0.08 -1.86 8.58 -39.79 -0.34 -2.20 16 30 C -0.22 -2.38 7.86 -39.43 -0.31 -2.69 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.51 6.72 -51.93 -0.35 0.16 16 37 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.62 6.72 -51.93 -0.35 0.27 16 40 H 0.08 1.06 7.53 -51.93 -0.39 0.67 16 41 H 0.08 0.66 7.76 -51.93 -0.40 0.26 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.66 6.80 -51.93 -0.35 0.30 16 44 H 0.39 5.16 8.41 -40.82 -0.34 4.81 16 45 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 46 H 0.12 3.20 6.14 -52.49 -0.32 2.88 16 47 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 48 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 49 H 0.10 2.46 6.34 -52.49 -0.33 2.13 16 50 H 0.13 1.20 5.39 -52.48 -0.28 0.91 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -31.79 406.11 -10.70 -42.50 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.23 Total: 10.44 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -4.59 Total: -25.29 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.55 Total: -30.95 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.53 Total: -16.32 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.79 -10.70 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044901202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.196 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds