Wall clock time and date at job start Tue Mar 31 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38291 * 119.97810 * 2 1 4 4 C 1.38236 * 120.11310 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.97092 * 179.97438 * 4 3 2 6 6 C 1.38169 * 120.05695 * 359.97438 * 4 3 2 7 7 C 1.50704 * 120.02737 * 180.02562 * 6 4 3 8 8 C 1.38706 * 119.94531 * 359.97438 * 6 4 3 9 9 O 1.35899 * 120.05609 * 179.97438 * 8 6 4 10 10 C 1.42904 * 116.99809 * 185.54874 * 9 8 6 11 11 H 1.09003 * 109.47096 * 35.03438 * 10 9 8 12 12 C 1.52994 * 109.47260 * 275.03218 * 10 9 8 13 13 C 1.50709 * 109.46865 * 155.03335 * 10 9 8 14 14 O 1.21281 * 119.99745 * 5.00171 * 13 10 9 15 15 N 1.34774 * 119.99692 * 185.00410 * 13 10 9 16 16 C 1.39233 * 119.99774 * 174.41025 * 15 13 10 17 17 C 1.39483 * 119.83421 * 325.29199 * 16 15 13 18 18 C 1.36375 * 120.17017 * 180.23845 * 17 16 15 19 19 C 1.40867 * 119.82690 * 359.49788 * 18 17 16 20 20 C 1.41154 * 120.16173 * 180.25326 * 19 18 17 21 21 H 1.08002 * 119.99916 * 34.62879 * 20 19 18 22 22 C 1.39908 * 119.99918 * 214.62256 * 20 19 18 23 23 N 1.30872 * 119.99950 * 5.45836 * 22 20 19 24 24 Si 1.86795 * 119.99767 * 185.45795 * 22 20 19 25 25 H 1.48506 * 109.47402 * 60.00444 * 24 22 20 26 26 H 1.48505 * 109.47202 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47680 * 300.00066 * 24 22 20 28 28 C 1.40869 * 119.67404 * 0.50292 * 19 18 17 29 29 C 1.36373 * 119.82622 * 359.75123 * 28 19 18 30 30 C 1.38132 * 119.97027 * 180.25215 * 2 1 3 31 31 H 1.09001 * 109.47100 * 89.99766 * 1 2 3 32 32 H 1.08996 * 109.47463 * 210.00358 * 1 2 3 33 33 H 1.09003 * 109.46729 * 330.00297 * 1 2 3 34 34 H 1.07998 * 119.94038 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.46989 * 270.02374 * 5 4 3 36 36 H 1.08999 * 109.47001 * 30.02756 * 5 4 3 37 37 H 1.09007 * 109.47033 * 150.02381 * 5 4 3 38 38 H 1.08995 * 109.47595 * 269.97866 * 7 6 4 39 39 H 1.09000 * 109.46741 * 29.98498 * 7 6 4 40 40 H 1.09008 * 109.46747 * 149.97907 * 7 6 4 41 41 H 1.09003 * 109.47362 * 60.00336 * 12 10 9 42 42 H 1.09000 * 109.47226 * 180.02562 * 12 10 9 43 43 H 1.09003 * 109.47246 * 300.00128 * 12 10 9 44 44 H 0.97002 * 120.00114 * 354.40254 * 15 13 10 45 45 H 1.08001 * 119.91379 * 359.96143 * 17 16 15 46 46 H 1.08005 * 120.08340 * 179.75148 * 18 17 16 47 47 H 0.96998 * 119.99784 * 179.97438 * 23 22 20 48 48 H 1.07998 * 120.08460 * 179.73328 * 28 19 18 49 49 H 1.08002 * 119.91455 * 179.97438 * 29 28 19 50 50 H 1.08000 * 120.02199 * 0.02618 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.3301 2.5084 -0.0011 6 6 4.2751 0.0069 -0.0005 7 6 5.7822 0.0112 -0.0005 8 6 3.5845 -1.1960 0.0005 9 8 4.2657 -2.3720 0.0000 10 6 3.4940 -3.5686 -0.1219 11 1 2.6417 -3.3861 -0.7764 12 6 2.9941 -3.9960 1.2594 13 6 4.3513 -4.6617 -0.7064 14 8 5.5314 -4.4655 -0.9059 15 7 3.8064 -5.8571 -1.0072 16 6 4.5686 -6.8266 -1.6535 17 6 5.5232 -6.4445 -2.5960 18 6 6.2702 -7.3886 -3.2366 19 6 6.0830 -8.7522 -2.9367 20 6 6.8559 -9.7351 -3.5917 21 1 7.8821 -9.5270 -3.8565 22 6 6.2928 -10.9787 -3.8976 23 7 5.0214 -11.1941 -3.6741 24 14 7.3556 -12.3317 -4.6251 25 1 8.4555 -12.6582 -3.6822 26 1 6.5265 -13.5417 -4.8572 27 1 7.9297 -11.8708 -5.9148 28 6 5.1169 -9.1305 -1.9838 29 6 4.3739 -8.1752 -1.3551 30 6 2.1970 -1.1966 -0.0053 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6566 2.1324 -0.0004 35 1 4.5100 2.8236 -1.0289 36 1 3.7392 3.2664 0.5132 37 1 5.2833 2.3808 0.5120 38 1 6.1456 0.0119 -1.0281 39 1 6.1429 0.9024 0.5131 40 1 6.1480 -0.8776 0.5137 41 1 2.3740 -3.2055 1.6821 42 1 2.4059 -4.9090 1.1664 43 1 3.8465 -4.1785 1.9139 44 1 2.8834 -6.0420 -0.7734 45 1 5.6681 -5.3984 -2.8222 46 1 7.0062 -7.0914 -3.9690 47 1 4.6309 -12.0562 -3.8866 48 1 4.9649 -10.1742 -1.7519 49 1 3.6326 -8.4636 -0.6246 50 1 1.6569 -2.1318 -0.0098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044901203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:46 Heat of formation + Delta-G solvation = -39.073135 kcal Electronic energy + Delta-G solvation = -30134.508969 eV Core-core repulsion = 26091.216489 eV Total energy + Delta-G solvation = -4043.292480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.85883 -39.68495 -38.09898 -37.05654 -34.59977 -34.49095 -33.17132 -32.21333 -30.91777 -29.62319 -29.42350 -28.82462 -27.36006 -25.55639 -25.03200 -24.17309 -22.21280 -21.40056 -20.95730 -20.47926 -19.47136 -17.75717 -17.53323 -17.24499 -16.34012 -15.97077 -15.68729 -15.65235 -15.16201 -14.73466 -14.41749 -14.15474 -13.98004 -13.85750 -13.62431 -13.34530 -13.06055 -13.05483 -12.99025 -12.82895 -12.73548 -12.57118 -12.35788 -12.15130 -12.01691 -11.87672 -11.76265 -11.61288 -11.50115 -11.38976 -11.14521 -10.98281 -10.90487 -10.81017 -10.57182 -10.07467 -9.80976 -9.37764 -9.21183 -8.82085 -8.68367 -8.17142 -7.60237 -6.93937 -6.69854 -4.35180 1.10823 1.27314 2.44314 2.71810 2.97308 3.04314 3.07700 3.11112 3.29504 3.50370 3.79249 3.95779 4.46064 4.54080 4.57654 4.64390 4.77960 4.79104 4.84063 4.93430 5.00856 5.08207 5.27522 5.30106 5.31435 5.34268 5.40153 5.47079 5.55103 5.59363 5.63018 5.67574 5.75557 5.84065 5.86325 6.13582 6.16196 6.22129 6.34293 6.34815 6.45315 6.63903 6.68137 6.85395 7.01770 7.14711 7.22851 7.29459 7.56323 7.65135 7.80916 8.01617 8.17333 8.25210 8.55754 8.65764 8.88176 8.94969 10.25854 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.001867 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.497993 B =14993.010431 C =15673.447461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.158 4.158 4 C -0.048 4.048 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.109 4.109 8 C 0.140 3.860 9 O -0.279 6.279 10 C 0.068 3.932 11 H 0.095 0.905 12 C -0.175 4.175 13 C 0.503 3.497 14 O -0.507 6.507 15 N -0.646 5.646 16 C 0.003 3.997 17 C -0.081 4.081 18 C -0.205 4.205 19 C 0.107 3.893 20 C -0.463 4.463 21 H 0.077 0.923 22 C 0.072 3.928 23 N -0.810 5.810 24 Si 0.913 3.087 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.139 4.139 29 C -0.116 4.116 30 C -0.216 4.216 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.396 0.604 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.279 0.721 48 H 0.122 0.878 49 H 0.092 0.908 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 20.043 8.741 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.177 4.177 4 C -0.048 4.048 5 C -0.173 4.173 6 C -0.121 4.121 7 C -0.165 4.165 8 C 0.094 3.906 9 O -0.191 6.191 10 C 0.008 3.992 11 H 0.113 0.887 12 C -0.233 4.233 13 C 0.288 3.712 14 O -0.381 6.381 15 N -0.291 5.291 16 C -0.088 4.088 17 C -0.101 4.101 18 C -0.225 4.225 19 C 0.105 3.895 20 C -0.494 4.494 21 H 0.095 0.905 22 C -0.144 4.144 23 N -0.437 5.437 24 Si 0.738 3.262 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.159 4.159 29 C -0.136 4.136 30 C -0.234 4.234 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.229 0.771 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.090 0.910 48 H 0.140 0.860 49 H 0.110 0.890 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.108 19.986 8.577 23.579 hybrid contribution -0.499 -0.914 -0.306 1.085 sum -9.607 19.073 8.271 22.901 Atomic orbital electron populations 1.20799 0.91080 1.02770 1.02455 1.19628 0.95849 0.92422 0.97186 1.20745 0.93295 0.97416 1.06197 1.19543 0.93462 0.94168 0.97674 1.20864 1.00301 0.93552 1.02587 1.19079 0.96608 0.89701 1.06683 1.20681 0.90440 1.02814 1.02561 1.18836 0.90275 0.85696 0.95756 1.86220 1.34466 1.11212 1.87197 1.22220 0.94026 0.84314 0.98631 0.88711 1.22329 1.02696 1.02644 0.95592 1.19944 0.88316 0.83366 0.79610 1.90740 1.15429 1.80348 1.51558 1.42851 1.14662 1.13285 1.58309 1.17154 1.02645 0.86974 1.02068 1.20257 0.96539 0.98294 0.95002 1.20790 1.04348 0.93392 1.03965 1.17690 0.91162 0.91389 0.89289 1.19476 0.99260 0.96920 1.33733 0.90511 1.25867 0.95058 0.99115 0.94321 1.69771 1.11616 1.24159 1.38110 0.86287 0.80344 0.79441 0.80109 1.18964 1.20421 1.19090 1.20937 0.99199 0.98406 0.97363 1.20255 1.01172 0.91339 1.00838 1.21121 0.92825 0.98942 1.10551 0.91002 0.91515 0.91448 0.86145 0.90885 0.91517 0.90857 0.91276 0.91563 0.90855 0.90839 0.90247 0.90546 0.77068 0.88124 0.88469 0.91002 0.86041 0.88996 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.05 -0.49 5.88 -104.64 -0.62 -1.11 16 3 C -0.16 -1.51 9.35 -39.56 -0.37 -1.88 16 4 C -0.05 -0.49 5.88 -104.65 -0.62 -1.11 16 5 C -0.12 -0.86 9.60 36.01 0.35 -0.51 16 6 C -0.12 -1.47 5.89 -104.47 -0.62 -2.08 16 7 C -0.11 -1.24 9.38 36.01 0.34 -0.90 16 8 C 0.14 1.84 6.57 -39.22 -0.26 1.58 16 9 O -0.28 -4.19 8.38 -39.28 -0.33 -4.52 16 10 C 0.07 0.89 2.64 -27.88 -0.07 0.82 16 11 H 0.10 1.03 6.30 -51.93 -0.33 0.71 16 12 C -0.18 -1.77 9.11 37.15 0.34 -1.44 16 13 C 0.50 8.85 6.89 -10.98 -0.08 8.77 16 14 O -0.51 -11.30 14.27 -14.30 -0.20 -11.50 16 15 N -0.65 -11.07 5.27 -9.74 -0.05 -11.12 16 16 C 0.00 0.07 6.26 -83.57 -0.52 -0.45 16 17 C -0.08 -1.94 8.57 -39.79 -0.34 -2.29 16 18 C -0.20 -5.20 9.74 -39.26 -0.38 -5.59 16 19 C 0.11 2.86 5.50 -106.80 -0.59 2.28 16 20 C -0.46 -12.32 9.03 -37.85 -0.34 -12.66 16 21 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 22 C 0.07 1.81 5.31 -17.34 -0.09 1.71 16 23 N -0.81 -20.77 10.96 55.55 0.61 -20.16 16 24 Si 0.91 18.83 29.56 -169.99 -5.03 13.80 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 27 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 28 C -0.14 -3.53 8.57 -39.26 -0.34 -3.87 16 29 C -0.12 -2.59 9.90 -39.79 -0.39 -2.99 16 30 C -0.22 -2.37 7.90 -39.43 -0.31 -2.68 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 37 H 0.07 0.50 5.94 -51.92 -0.31 0.19 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 40 H 0.07 0.95 7.53 -51.92 -0.39 0.56 16 41 H 0.07 0.64 6.93 -51.93 -0.36 0.28 16 42 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.40 5.15 8.41 -40.82 -0.34 4.81 16 45 H 0.10 2.40 6.50 -52.49 -0.34 2.06 16 46 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 47 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 48 H 0.12 3.16 6.46 -52.49 -0.34 2.82 16 49 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 50 H 0.13 1.19 5.44 -52.49 -0.29 0.91 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -31.61 406.11 -10.60 -42.21 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.17 Total: 9.97 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -4.55 Total: -24.80 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.56 Total: -31.28 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.53 Total: -16.02 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.61 -10.60 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044901203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.137 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds