Wall clock time and date at job start Tue Mar 31 2020 05:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86801 * 120.00355 * 2 1 4 4 H 1.48501 * 109.47206 * 240.00008 * 3 2 1 5 5 H 1.48504 * 109.46784 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47299 * 119.99541 * 3 2 1 7 7 C 1.39898 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99824 * 191.49922 * 7 2 1 9 9 C 1.41216 * 119.99833 * 11.49861 * 7 2 1 10 10 C 1.40834 * 120.18059 * 29.02803 * 9 7 2 11 11 C 1.36441 * 119.81251 * 180.25070 * 10 9 7 12 12 C 1.39312 * 120.17976 * 359.46100 * 11 10 9 13 13 O 1.35675 * 119.81390 * 180.25158 * 12 11 10 14 14 C 1.42898 * 116.99971 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47280 * 180.02562 * 14 13 12 16 16 C 1.38131 * 120.03375 * 359.97438 * 15 14 13 17 17 C 1.38261 * 120.06910 * 180.02562 * 16 15 14 18 18 C 1.38304 * 120.14379 * 0.02562 * 17 16 15 19 19 C 1.38096 * 120.06473 * 0.02562 * 18 17 16 20 20 C 1.38844 * 120.03716 * 179.72405 * 15 14 13 21 21 N 1.39949 * 120.07034 * 359.97438 * 20 15 14 22 22 C 1.34773 * 120.00087 * 160.13725 * 21 20 15 23 23 O 1.21581 * 120.00286 * 354.32455 * 22 21 20 24 24 N 1.34775 * 119.99927 * 174.32260 * 22 21 20 25 25 C 1.46506 * 119.99992 * 180.02562 * 24 22 21 26 26 C 1.52999 * 117.49696 * 223.62431 * 25 24 22 27 27 C 1.52996 * 59.99960 * 252.51070 * 26 25 24 28 28 C 1.39312 * 120.36787 * 0.27254 * 12 11 10 29 29 C 1.36435 * 120.18336 * 0.02562 * 28 12 11 30 30 H 0.97000 * 119.99778 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.09251 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.90660 * 179.73395 * 11 10 9 33 33 H 1.09010 * 109.46952 * 300.00005 * 14 13 12 34 34 H 1.09000 * 109.47630 * 59.99964 * 14 13 12 35 35 H 1.08003 * 119.96695 * 0.02562 * 16 15 14 36 36 H 1.08004 * 119.92999 * 179.97438 * 17 16 15 37 37 H 1.07992 * 119.96822 * 180.02562 * 18 17 16 38 38 H 1.07996 * 120.03028 * 179.97438 * 19 18 17 39 39 H 0.97000 * 119.99796 * 340.14035 * 21 20 15 40 40 H 0.97003 * 120.00525 * 0.02562 * 24 22 21 41 41 H 1.08995 * 115.54760 * 9.33055 * 25 24 22 42 42 H 1.08999 * 117.50237 * 0.02562 * 26 25 24 43 43 H 1.09001 * 117.49972 * 145.02083 * 26 25 24 44 44 H 1.09000 * 117.49949 * 252.50874 * 27 26 25 45 45 H 1.08997 * 117.51759 * 107.48232 * 27 26 25 46 46 H 1.08006 * 119.90638 * 180.02562 * 28 12 11 47 47 H 1.08008 * 120.09418 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0719 -1.2209 0.1870 9 6 1.3234 -2.4223 -0.2427 10 6 0.1694 -2.4331 -1.0499 11 6 -0.4895 -3.6064 -1.2758 12 6 -0.0171 -4.7932 -0.7197 13 8 -0.6752 -5.9564 -0.9533 14 6 -0.1387 -7.1371 -0.3531 15 6 -0.9949 -8.3213 -0.7213 16 6 -2.1044 -8.1488 -1.5259 17 6 -2.8908 -9.2347 -1.8637 18 6 -2.5699 -10.4965 -1.3972 19 6 -1.4626 -10.6754 -0.5916 20 6 -0.6665 -9.5877 -0.2565 21 7 0.4602 -9.7668 0.5541 22 6 0.5687 -10.8679 1.3236 23 8 -0.3559 -11.6545 1.3932 24 7 1.7020 -11.0973 2.0159 25 6 1.8201 -12.2946 2.8519 26 6 2.4364 -12.1273 4.2423 27 6 3.2279 -12.8236 3.1334 28 6 1.1268 -4.7920 0.0754 29 6 1.7938 -3.6264 0.3160 30 1 -0.4850 0.8401 0.0004 31 1 -0.1952 -1.5147 -1.4859 32 1 -1.3770 -3.6157 -1.8911 33 1 0.8776 -7.2980 -0.7130 34 1 -0.1262 -7.0203 0.7305 35 1 -2.3579 -7.1646 -1.8915 36 1 -3.7580 -9.0971 -2.4926 37 1 -3.1858 -11.3427 -1.6632 38 1 -1.2127 -11.6608 -0.2273 39 1 1.1631 -9.0983 0.5621 40 1 2.4396 -10.4697 1.9607 41 1 1.0204 -13.0266 2.7403 42 1 2.7536 -11.1265 4.5352 43 1 2.0420 -12.7494 5.0458 44 1 3.3542 -13.9037 3.2073 45 1 4.0661 -12.2810 2.6963 46 1 1.4867 -5.7165 0.5025 47 1 2.6808 -3.6273 0.9323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048161406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:44 Heat of formation + Delta-G solvation = 15.693088 kcal Electronic energy + Delta-G solvation = -29203.347601 eV Core-core repulsion = 25124.315530 eV Total energy + Delta-G solvation = -4079.032071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.06585 -39.38988 -38.55219 -37.48308 -36.40787 -34.99939 -33.39475 -33.19330 -31.75985 -29.81180 -29.41994 -29.00332 -26.38269 -24.76760 -23.79702 -22.83046 -22.20640 -21.67021 -21.16244 -20.73277 -20.42351 -18.86089 -17.81999 -17.36358 -16.96949 -16.63806 -15.89915 -15.72759 -15.34538 -15.21466 -15.10421 -14.77106 -14.33063 -14.18713 -14.00058 -13.76690 -13.22618 -13.04909 -13.00913 -12.85127 -12.27348 -12.18489 -12.06010 -11.92233 -11.78417 -11.68788 -11.37358 -11.21265 -11.05641 -10.95910 -10.86500 -10.74555 -10.68136 -10.06276 -10.04661 -9.87422 -9.38214 -9.21035 -9.12509 -8.65450 -8.01654 -7.70113 -7.02983 -6.71027 -4.31663 1.28480 1.49945 2.15270 2.72586 2.75226 2.89111 3.06695 3.09152 3.17786 3.50692 3.66283 3.87322 3.91928 3.94965 4.31896 4.50532 4.54585 4.61638 4.83065 5.07397 5.12961 5.18766 5.28758 5.35991 5.41372 5.47649 5.50849 5.59170 5.62662 5.62725 5.63199 5.96450 6.05161 6.11804 6.14384 6.20247 6.39304 6.52632 6.61921 6.67816 6.72147 6.92562 7.06052 7.08401 7.15648 7.40873 7.51078 7.52766 7.71880 7.96564 8.13863 8.16153 8.38505 8.60500 8.87370 8.93573 10.24154 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.002139 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.487428 B =13084.365885 C =15370.910423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.088 3.912 10 C -0.126 4.126 11 C -0.121 4.121 12 C -0.004 4.004 13 O -0.319 6.319 14 C 0.112 3.888 15 C -0.117 4.117 16 C -0.072 4.072 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.141 4.141 20 C 0.170 3.830 21 N -0.679 5.679 22 C 0.710 3.290 23 O -0.568 6.568 24 N -0.714 5.714 25 C 0.099 3.901 26 C -0.195 4.195 27 C -0.190 4.190 28 C -0.170 4.170 29 C -0.194 4.194 30 H 0.280 0.720 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.156 0.844 39 H 0.408 0.592 40 H 0.400 0.600 41 H 0.141 0.859 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -20.668 2.204 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.086 3.914 10 C -0.145 4.145 11 C -0.140 4.140 12 C -0.047 4.047 13 O -0.235 6.235 14 C 0.036 3.964 15 C -0.120 4.120 16 C -0.091 4.091 17 C -0.162 4.162 18 C -0.122 4.122 19 C -0.161 4.161 20 C 0.075 3.925 21 N -0.325 5.325 22 C 0.411 3.589 23 O -0.445 6.445 24 N -0.367 5.367 25 C -0.008 4.008 26 C -0.234 4.234 27 C -0.228 4.228 28 C -0.189 4.189 29 C -0.214 4.214 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.173 0.827 39 H 0.243 0.757 40 H 0.235 0.765 41 H 0.159 0.841 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.110 0.890 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.159 -21.263 2.198 21.408 hybrid contribution 1.382 1.500 0.369 2.072 sum 2.541 -19.764 2.566 20.091 Atomic orbital electron populations 1.69786 1.07344 1.29113 1.37071 1.25862 0.94837 1.01128 0.92519 0.86333 0.79973 0.80352 0.79802 1.18964 1.20396 1.19162 1.19413 0.95955 0.90530 1.43624 0.90690 1.17606 0.92116 0.92188 0.89518 1.21024 0.97906 0.95934 0.99656 1.19849 1.00647 0.90617 1.02839 1.18595 0.95887 0.84560 1.05682 1.85794 1.52772 1.13662 1.71276 1.20979 0.95114 0.83249 0.97102 1.19406 0.98632 0.91395 1.02602 1.20885 0.92852 0.99702 0.95654 1.21171 1.00502 0.92806 1.01720 1.21063 0.96865 0.97230 0.97043 1.21566 0.95888 0.99449 0.99202 1.17236 0.88542 0.93003 0.93762 1.42583 1.22585 1.23121 1.44179 1.15780 0.82954 0.81745 0.78410 1.90841 1.38213 1.47752 1.67671 1.44505 1.16543 1.26112 1.49499 1.21463 0.97773 0.89246 0.92312 1.23477 1.04307 1.02670 0.92911 1.23417 0.94954 1.01478 1.02974 1.20367 0.97510 0.97818 1.03189 1.20607 1.02523 0.93010 1.05223 0.90914 0.85533 0.88344 0.92360 0.92047 0.84383 0.86033 0.85982 0.82712 0.75670 0.76535 0.84141 0.88349 0.87830 0.87718 0.88384 0.89040 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.73 10.89 55.55 0.61 -20.12 16 2 C 0.07 1.80 5.23 -17.34 -0.09 1.71 16 3 Si 0.91 18.56 29.57 -169.99 -5.03 13.53 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.12 9.05 -37.83 -0.34 -12.46 16 8 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16 9 C 0.09 2.30 5.54 -106.81 -0.59 1.70 16 10 C -0.13 -3.21 8.60 -39.25 -0.34 -3.55 16 11 C -0.12 -2.83 9.92 -39.83 -0.40 -3.23 16 12 C 0.00 -0.09 6.71 -38.78 -0.26 -0.35 16 13 O -0.32 -6.19 8.60 -18.73 -0.16 -6.36 16 14 C 0.11 1.72 4.02 36.01 0.14 1.87 16 15 C -0.12 -1.70 5.90 -104.44 -0.62 -2.32 16 16 C -0.07 -1.04 9.37 -39.61 -0.37 -1.41 16 17 C -0.14 -1.76 10.04 -39.55 -0.40 -2.16 16 18 C -0.10 -1.24 10.04 -39.61 -0.40 -1.64 16 19 C -0.14 -1.89 8.79 -39.39 -0.35 -2.23 16 20 C 0.17 2.28 6.48 -83.69 -0.54 1.74 16 21 N -0.68 -7.52 5.24 -14.23 -0.07 -7.60 16 22 C 0.71 8.18 8.41 -86.92 -0.73 7.44 16 23 O -0.57 -8.26 12.80 5.29 0.07 -8.19 16 24 N -0.71 -5.81 5.57 -58.68 -0.33 -6.14 16 25 C 0.10 0.74 6.43 -67.93 -0.44 0.30 16 26 C -0.19 -1.15 10.46 -26.73 -0.28 -1.43 16 27 C -0.19 -1.00 10.45 -26.73 -0.28 -1.28 16 28 C -0.17 -3.65 8.96 -39.83 -0.36 -4.01 16 29 C -0.19 -4.60 9.74 -39.25 -0.38 -4.98 16 30 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 31 H 0.13 3.32 6.26 -52.48 -0.33 2.99 16 32 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.06 0.82 7.37 -51.92 -0.38 0.43 16 34 H 0.06 0.93 7.65 -51.93 -0.40 0.54 16 35 H 0.14 2.05 7.00 -52.48 -0.37 1.68 16 36 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.16 2.16 5.41 -52.49 -0.28 1.88 16 39 H 0.41 3.57 7.58 -40.82 -0.31 3.26 16 40 H 0.40 2.27 8.85 -40.82 -0.36 1.91 16 41 H 0.14 1.21 7.40 -51.93 -0.38 0.83 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 1.64 6.27 -52.48 -0.33 1.31 16 47 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -30.44 392.92 -12.08 -42.52 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.07 Total: 12.71 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -7.01 Total: -26.28 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.20 Total: -33.86 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.09 Total: -14.55 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.44 -12.08 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048161406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.213 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds