Wall clock time and date at job start Tue Mar 31 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47282 * 240.00062 * 3 2 1 5 5 H 1.48507 * 109.46779 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46946 * 119.99780 * 3 2 1 7 7 C 1.38657 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99196 * 179.97438 * 7 2 1 9 9 O 1.34823 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.35770 * 116.99865 * 174.92294 * 9 7 2 11 11 C 1.39092 * 119.97393 * 185.52017 * 10 9 7 12 12 C 1.38288 * 120.32692 * 180.02562 * 11 10 9 13 13 C 1.37907 * 120.27117 * 359.71890 * 12 11 10 14 14 C 1.40123 * 119.93800 * 0.55751 * 13 12 11 15 15 C 1.46680 * 120.16174 * 179.71912 * 14 13 12 16 16 C 1.37730 * 120.00144 * 324.14051 * 15 14 13 17 17 N 1.36445 * 127.28634 * 171.98807 * 16 15 14 18 18 C 1.30475 * 109.08287 * 179.97438 * 17 16 15 19 19 C 1.47570 * 124.20370 * 179.97438 * 18 17 16 20 20 C 1.39709 * 120.16846 * 180.02562 * 19 18 17 21 21 C 1.37863 * 119.86904 * 179.97438 * 20 19 18 22 22 C 1.38451 * 120.21830 * 359.97438 * 21 20 19 23 23 C 1.38269 * 120.34558 * 0.02562 * 22 21 20 24 24 C 1.38245 * 120.12528 * 359.74612 * 23 22 21 25 25 F 1.35099 * 120.11082 * 180.27704 * 24 23 22 26 26 O 1.34698 * 111.58692 * 0.02562 * 18 17 16 27 27 C 1.35050 * 108.69662 * 359.97438 * 26 18 17 28 28 O 1.21638 * 127.39752 * 179.97438 * 27 26 18 29 29 C 1.38464 * 119.97039 * 5.54288 * 10 9 7 30 30 H 0.97001 * 119.99466 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.83129 * 0.03924 * 11 10 9 32 32 H 1.08000 * 119.86354 * 179.97438 * 12 11 10 33 33 H 1.07993 * 120.03111 * 180.29822 * 13 12 11 34 34 H 1.08008 * 119.99978 * 144.13534 * 15 14 13 35 35 H 1.08004 * 120.06617 * 359.97438 * 20 19 18 36 36 H 1.08003 * 119.89362 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.82837 * 180.02562 * 22 21 20 38 38 H 1.07995 * 119.93099 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.13219 * 359.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5047 -0.1081 11 6 1.4334 -4.7354 -0.2302 12 6 2.1751 -5.8973 -0.3398 13 6 3.5532 -5.8455 -0.3347 14 6 4.2061 -4.6123 -0.2064 15 6 5.6716 -4.5521 -0.1943 16 6 6.3971 -5.5555 0.4089 17 7 7.7500 -5.7303 0.3784 18 6 8.0585 -6.7934 1.0689 19 6 9.4352 -7.2910 1.2552 20 6 9.6696 -8.4413 2.0127 21 6 10.9582 -8.9010 2.1823 22 6 12.0203 -8.2269 1.6040 23 6 11.7986 -7.0876 0.8526 24 6 10.5118 -6.6167 0.6694 25 9 10.2950 -5.5067 -0.0696 26 8 6.9640 -7.3809 1.5897 27 6 5.8757 -6.6691 1.2251 28 8 4.7149 -6.8973 1.5081 29 6 3.4529 -3.4375 -0.0958 30 1 -0.4849 0.8401 0.0004 31 1 0.3545 -4.7836 -0.2397 32 1 1.6731 -6.8489 -0.4338 33 1 4.1286 -6.7549 -0.4253 34 1 6.1818 -3.7209 -0.6584 35 1 8.8428 -8.9693 2.4646 36 1 11.1398 -9.7899 2.7682 37 1 13.0272 -8.5928 1.7406 38 1 12.6320 -6.5672 0.4042 39 1 3.9484 -2.4826 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048324489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:28 Heat of formation + Delta-G solvation = -15.435997 kcal Electronic energy + Delta-G solvation = -28794.104701 eV Core-core repulsion = 24356.710710 eV Total energy + Delta-G solvation = -4437.393991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.090 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.11507 -42.88571 -39.41489 -39.16890 -38.02122 -36.73040 -35.32817 -33.04581 -32.35673 -31.81802 -31.00205 -29.31953 -28.34904 -26.00835 -25.26004 -23.68632 -23.28970 -22.12952 -21.93833 -21.35671 -19.88703 -18.31075 -17.96914 -17.39224 -17.16558 -16.87728 -16.64989 -16.46741 -15.83437 -15.65213 -15.35903 -15.03718 -14.60150 -14.46668 -14.36846 -14.01308 -13.68981 -13.51812 -13.49334 -13.31721 -12.82229 -12.68340 -12.57166 -12.37595 -12.06010 -11.75333 -11.72854 -11.64417 -11.30354 -10.95853 -10.93546 -10.85901 -10.50894 -10.04654 -9.91636 -9.53507 -9.31330 -8.97732 -8.77758 -7.84103 -7.30044 -6.50524 -4.11100 -0.39219 0.57512 0.69773 1.95670 2.17871 2.22027 2.33909 2.92864 3.10198 3.10942 3.13830 3.22232 3.50198 3.70880 3.84699 3.91497 4.26869 4.39294 4.40943 4.65739 4.75717 4.77049 5.00958 5.11108 5.15187 5.26651 5.36788 5.48132 5.53607 5.61277 5.66124 5.73010 5.79947 5.85268 5.98600 6.02570 6.18155 6.30037 6.53056 6.59390 6.89396 7.03114 7.10305 7.19334 7.25846 7.41905 7.57744 7.91678 8.94205 9.61336 10.66988 Molecular weight = 353.09amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.002260 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.225800 B =12384.552778 C =13784.291111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.396 4.396 8 H 0.091 0.909 9 O -0.175 6.175 10 C 0.138 3.862 11 C -0.152 4.152 12 C -0.089 4.089 13 C -0.128 4.128 14 C -0.084 4.084 15 C 0.129 3.871 16 C -0.132 4.132 17 N -0.441 5.441 18 C 0.302 3.698 19 C -0.067 4.067 20 C -0.052 4.052 21 C -0.136 4.136 22 C -0.068 4.068 23 C -0.162 4.162 24 C 0.154 3.846 25 F -0.110 7.110 26 O -0.294 6.294 27 C 0.476 3.524 28 O -0.403 6.403 29 C -0.186 4.186 30 H 0.271 0.729 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.127 -15.908 1.920 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.472 4.472 8 H 0.108 0.892 9 O -0.079 6.079 10 C 0.085 3.915 11 C -0.171 4.171 12 C -0.108 4.108 13 C -0.147 4.147 14 C -0.085 4.085 15 C 0.110 3.890 16 C -0.238 4.238 17 N -0.169 5.169 18 C 0.088 3.912 19 C -0.069 4.069 20 C -0.072 4.072 21 C -0.154 4.154 22 C -0.087 4.087 23 C -0.180 4.180 24 C 0.133 3.867 25 F -0.088 7.088 26 O -0.198 6.198 27 C 0.318 3.682 28 O -0.285 6.285 29 C -0.206 4.206 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.380 -15.265 1.696 27.143 hybrid contribution -0.050 0.605 0.328 0.690 sum 22.330 -14.660 2.025 26.789 Atomic orbital electron populations 1.70027 1.05956 1.27900 1.45592 1.25284 0.95857 0.98828 0.96384 0.85791 0.78749 0.79741 0.79240 1.19412 1.20205 1.19467 1.21227 0.91671 0.80806 1.53529 0.89203 1.84017 1.33879 1.11234 1.78754 1.19170 0.89848 0.88483 0.94008 1.20543 1.00051 0.90234 1.06271 1.20581 0.93338 0.97066 0.99790 1.20903 0.94532 0.95229 1.04029 1.18535 0.90067 0.94403 1.05457 1.22784 0.92771 0.91223 0.82257 1.21560 0.90065 1.02141 1.10054 1.71338 1.12478 1.14784 1.18334 1.22758 0.87268 0.89137 0.92000 1.17525 0.85583 0.98872 1.04964 1.21268 0.98421 0.92914 0.94615 1.21163 0.91760 1.01183 1.01287 1.21268 0.99974 0.93308 0.94103 1.21154 0.95045 0.99018 1.02807 1.17619 0.92579 0.84414 0.92085 1.91634 1.95427 1.48568 1.73125 1.84992 1.17194 1.51669 1.65922 1.21960 0.83983 0.82339 0.79947 1.91077 1.12352 1.69987 1.55074 1.21328 0.93878 0.97431 1.07923 0.91868 0.85924 0.86306 0.87113 0.82896 0.83786 0.84368 0.84352 0.83720 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 3 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.40 -10.78 9.48 30.89 0.29 -10.48 16 8 H 0.09 2.23 5.20 -52.49 -0.27 1.96 16 9 O -0.18 -4.86 9.76 0.00 0.00 -4.86 16 10 C 0.14 3.25 6.64 -39.18 -0.26 2.99 16 11 C -0.15 -3.13 9.99 -39.25 -0.39 -3.52 16 12 C -0.09 -1.63 10.02 -39.68 -0.40 -2.03 16 13 C -0.13 -2.34 7.06 -39.00 -0.28 -2.61 16 14 C -0.08 -1.55 5.51 -105.12 -0.58 -2.13 16 15 C 0.13 2.03 9.97 -36.36 -0.36 1.67 16 16 C -0.13 -2.14 6.85 -82.18 -0.56 -2.70 16 17 N -0.44 -6.80 9.78 -7.86 -0.08 -6.87 16 18 C 0.30 4.17 7.77 -14.32 -0.11 4.06 16 19 C -0.07 -0.71 5.88 -104.92 -0.62 -1.32 16 20 C -0.05 -0.40 9.69 -39.17 -0.38 -0.78 16 21 C -0.14 -0.69 10.03 -39.64 -0.40 -1.09 16 22 C -0.07 -0.31 10.04 -39.49 -0.40 -0.71 16 23 C -0.16 -1.04 10.01 -39.57 -0.40 -1.44 16 24 C 0.15 1.52 7.29 -38.96 -0.28 1.23 16 25 F -0.11 -1.33 15.66 2.25 0.04 -1.29 16 26 O -0.29 -4.37 10.34 -21.54 -0.22 -4.60 16 27 C 0.48 8.07 7.98 34.55 0.28 8.34 16 28 O -0.40 -7.64 13.98 -18.82 -0.26 -7.90 16 29 C -0.19 -3.90 8.92 -38.84 -0.35 -4.25 16 30 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 32 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.11 1.92 5.94 -52.49 -0.31 1.61 16 34 H 0.15 2.01 8.06 -52.48 -0.42 1.59 16 35 H 0.14 0.96 7.83 -52.48 -0.41 0.55 16 36 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 37 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 38 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.14 2.76 5.63 -52.49 -0.30 2.46 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -32.65 353.93 -7.71 -40.36 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.96 Total: 2.53 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -5.29 Total: -13.76 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.68 Total: -30.93 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.49 Total: -17.36 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.65 -7.71 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048324489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.919 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds