Wall clock time and date at job start Tue Mar 31 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38304 * 119.93317 * 2 1 4 4 C 1.38093 * 120.06465 * 179.71878 * 3 2 1 5 5 C 1.38872 * 119.93182 * 0.57979 * 4 3 2 6 6 N 1.40121 * 120.06694 * 179.72037 * 5 4 3 7 7 C 1.36855 * 127.18041 * 269.76468 * 6 5 4 8 8 S 1.76201 * 126.40050 * 359.96511 * 7 6 5 9 9 C 1.76198 * 100.00159 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99956 * 359.97438 * 9 8 7 11 11 C 1.38681 * 119.99934 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00001 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00050 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46858 * 90.00185 * 13 11 9 15 15 H 1.48502 * 109.47156 * 209.99935 * 13 11 9 16 16 H 1.48498 * 109.47139 * 330.00446 * 13 11 9 17 17 N 1.31680 * 107.20325 * 179.97438 * 7 6 5 18 18 N 1.28512 * 110.07513 * 359.76745 * 17 7 6 19 19 C 1.31535 * 109.98630 * 0.38925 * 18 17 7 20 20 C 1.47701 * 126.45184 * 179.88381 * 19 18 17 21 21 C 1.39619 * 119.75157 * 359.41182 * 20 19 18 22 22 C 1.38326 * 119.04670 * 180.27836 * 21 20 19 23 23 C 1.38840 * 118.53062 * 359.97438 * 22 21 20 24 24 C 1.38288 * 119.42032 * 0.02562 * 23 22 21 25 25 N 1.31711 * 120.92345 * 359.97438 * 24 23 22 26 26 C 1.38826 * 119.86518 * 359.44558 * 5 4 3 27 27 C 1.50703 * 120.03396 * 180.23706 * 26 5 4 28 28 C 1.38142 * 119.92969 * 0.25215 * 26 5 4 29 29 H 1.08997 * 109.47322 * 269.98131 * 1 2 3 30 30 H 1.08998 * 109.46661 * 29.97749 * 1 2 3 31 31 H 1.08998 * 109.47023 * 149.97575 * 1 2 3 32 32 H 1.08001 * 119.96610 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.03503 * 180.29949 * 4 3 2 34 34 H 0.96997 * 120.00004 * 180.02562 * 12 11 9 35 35 H 1.08002 * 120.48085 * 0.25500 * 21 20 19 36 36 H 1.07998 * 120.72917 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.28947 * 179.97438 * 23 22 21 38 38 H 1.08008 * 119.53667 * 179.97438 * 24 23 22 39 39 H 1.08997 * 109.47023 * 89.99646 * 27 26 5 40 40 H 1.08997 * 109.47000 * 209.99801 * 27 26 5 41 41 H 1.08999 * 109.47036 * 329.99379 * 27 26 5 42 42 H 1.08001 * 119.95834 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5781 1.2017 0.0059 5 6 4.2738 -0.0001 -0.0004 6 7 5.6750 -0.0002 -0.0004 7 6 6.5021 0.0010 -1.0908 8 16 6.0041 0.0021 -2.7809 9 6 7.5820 0.0041 -3.5649 10 1 8.4818 0.0048 -2.9675 11 6 7.6686 0.0060 -4.9490 12 7 8.8473 0.0070 -5.5347 13 14 6.1123 0.0055 -5.9822 14 1 5.6984 1.4055 -6.2543 15 1 6.3713 -0.6926 -7.2670 16 1 5.0301 -0.6966 -5.2467 17 7 7.7397 0.0010 -0.6409 18 7 7.7419 0.0048 0.6442 19 6 6.5065 -0.0009 1.0959 20 6 6.0903 -0.0015 2.5131 21 6 7.0581 -0.0080 3.5194 22 6 6.6520 -0.0144 4.8417 23 6 5.2913 -0.0135 5.1175 24 6 4.3862 -0.0069 4.0719 25 7 4.7976 -0.0009 2.8207 26 6 3.5783 -1.2016 -0.0009 27 6 4.3294 -2.5080 -0.0023 28 6 2.1968 -1.1982 -0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6555 2.1329 0.0004 33 1 4.1165 2.1380 0.0108 34 1 8.9078 0.0087 -6.5028 35 1 8.1087 -0.0085 3.2691 36 1 7.3774 -0.0191 5.6418 37 1 4.9426 -0.0188 6.1397 38 1 3.3272 -0.0066 4.2844 39 1 4.5111 -2.8237 1.0250 40 1 3.7387 -3.2662 -0.5163 41 1 5.2817 -2.3791 -0.5167 42 1 1.6552 -2.1326 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048355092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:56 Heat of formation + Delta-G solvation = 135.702383 kcal Electronic energy + Delta-G solvation = -28095.321325 eV Core-core repulsion = 24360.705776 eV Total energy + Delta-G solvation = -3734.615549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.105 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.36299 -39.94591 -39.42166 -35.01885 -32.83500 -32.64741 -32.54786 -32.28288 -31.28312 -29.16931 -27.26149 -26.54464 -25.86490 -24.17929 -23.72528 -22.57338 -21.86969 -21.23240 -20.33382 -18.53444 -17.57068 -16.78091 -16.35751 -16.07825 -15.81408 -15.38817 -15.06832 -14.95029 -14.79040 -14.12006 -14.06767 -13.85158 -13.80598 -13.24704 -13.20393 -13.16451 -13.02063 -12.60649 -12.14230 -12.03558 -11.92334 -11.61163 -11.48763 -11.27170 -11.22425 -11.19978 -10.94107 -10.29331 -10.20555 -10.07938 -9.93342 -9.88287 -9.62860 -9.25523 -9.02719 -8.74023 -8.63822 -8.41904 -7.08775 -6.43593 -4.23587 0.66001 1.17709 1.19446 1.41630 2.10766 2.26635 2.98643 3.12484 3.19870 3.28839 3.30009 3.64109 3.89719 3.91985 4.07264 4.39199 4.60268 4.70160 4.73297 4.80161 4.88384 4.92356 4.94777 5.00864 5.24125 5.25508 5.29909 5.45296 5.47818 5.58107 5.65270 5.68850 5.71486 5.74304 5.85750 5.96601 5.98581 6.04202 6.18575 6.21424 6.32671 6.42971 6.53035 6.54096 6.56758 6.84222 7.43229 7.81805 7.83170 8.60942 8.94830 9.19268 10.65300 Molecular weight = 352.11amu Principal moments of inertia in cm(-1) A = 0.010393 B = 0.004362 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.417370 B = 6417.774109 C = 8504.346297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.118 4.118 4 C -0.080 4.080 5 C 0.139 3.861 6 N -0.419 5.419 7 C 0.202 3.798 8 S 0.075 5.925 9 C -0.530 4.530 10 H 0.122 0.878 11 C 0.104 3.896 12 N -0.859 5.859 13 Si 0.840 3.160 14 H -0.261 1.261 15 H -0.264 1.264 16 H -0.238 1.238 17 N -0.284 5.284 18 N -0.254 5.254 19 C 0.184 3.816 20 C 0.217 3.783 21 C -0.134 4.134 22 C -0.074 4.074 23 C -0.177 4.177 24 C 0.105 3.895 25 N -0.468 5.468 26 C -0.046 4.046 27 C -0.117 4.117 28 C -0.115 4.115 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.275 0.725 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.541 -0.994 18.032 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.099 4.099 5 C 0.048 3.952 6 N -0.112 5.112 7 C -0.167 4.167 8 S 0.308 5.692 9 C -0.678 4.678 10 H 0.140 0.860 11 C -0.107 4.107 12 N -0.493 5.493 13 Si 0.664 3.336 14 H -0.186 1.186 15 H -0.188 1.188 16 H -0.163 1.163 17 N -0.130 5.130 18 N -0.098 5.098 19 C -0.081 4.081 20 C 0.079 3.921 21 C -0.156 4.156 22 C -0.099 4.099 23 C -0.198 4.198 24 C -0.054 4.054 25 N -0.178 5.178 26 C -0.047 4.047 27 C -0.173 4.173 28 C -0.134 4.134 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.553 -0.990 16.538 23.420 hybrid contribution 0.078 0.110 0.622 0.636 sum -16.475 -0.880 17.160 23.805 Atomic orbital electron populations 1.20783 0.91073 1.02844 1.02212 1.19905 0.96002 0.92958 0.98445 1.20759 0.92943 0.97722 1.02237 1.21041 0.94416 0.96695 0.97759 1.17088 0.79136 0.93720 1.05232 1.43486 1.05107 1.57655 1.04961 1.27794 0.88736 1.03282 0.96899 1.83040 1.14667 1.87147 0.84378 1.22583 0.91141 1.59227 0.94871 0.86001 1.24636 0.96343 0.93248 0.96501 1.69903 1.22785 1.45875 1.10785 0.87044 0.84028 0.80310 0.82256 1.18597 1.18797 1.16300 1.74960 1.15461 1.21809 1.00742 1.74303 1.15665 1.15206 1.04623 1.22256 0.86955 1.11510 0.87373 1.18143 0.89087 0.96641 0.88259 1.22052 1.01484 0.99808 0.92257 1.21517 0.96147 0.95951 0.96334 1.22194 0.94123 1.02595 1.00842 1.22636 1.00221 0.95422 0.87115 1.67705 1.16156 1.11878 1.22100 1.19828 0.93790 0.94111 0.96991 1.20774 1.00624 0.93732 1.02205 1.20691 0.92344 0.97787 1.02530 0.91181 0.91478 0.91506 0.85617 0.85969 0.91442 0.83481 0.84400 0.84800 0.82703 0.91266 0.90952 0.91302 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.07 -0.83 5.88 -104.59 -0.62 -1.44 16 3 C -0.12 -1.46 9.69 -39.61 -0.38 -1.84 16 4 C -0.08 -1.23 9.97 -39.40 -0.39 -1.62 16 5 C 0.14 2.38 4.04 -83.61 -0.34 2.04 16 6 N -0.42 -8.39 1.93 -58.12 -0.11 -8.50 16 7 C 0.20 4.74 7.54 -87.71 -0.66 4.08 16 8 S 0.07 1.81 19.55 -107.50 -2.10 -0.29 16 9 C -0.53 -15.16 9.91 30.90 0.31 -14.85 16 10 H 0.12 3.88 7.15 -52.48 -0.38 3.50 16 11 C 0.10 2.91 5.50 -17.48 -0.10 2.81 16 12 N -0.86 -25.21 13.97 55.48 0.77 -24.43 16 13 Si 0.84 19.64 27.73 -169.99 -4.71 14.93 16 14 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.24 -5.33 6.74 56.52 0.38 -4.95 16 17 N -0.28 -7.18 11.03 30.81 0.34 -6.84 16 18 N -0.25 -5.72 11.86 32.61 0.39 -5.33 16 19 C 0.18 3.64 7.79 -153.58 -1.20 2.44 16 20 C 0.22 3.47 6.75 -83.03 -0.56 2.91 16 21 C -0.13 -1.77 9.74 -39.03 -0.38 -2.15 16 22 C -0.07 -0.72 10.16 -39.33 -0.40 -1.12 16 23 C -0.18 -1.55 10.11 -39.34 -0.40 -1.95 16 24 C 0.10 1.11 11.17 -17.58 -0.20 0.92 16 25 N -0.47 -6.71 8.81 -9.85 -0.09 -6.80 16 26 C -0.05 -0.70 5.90 -104.44 -0.62 -1.31 16 27 C -0.12 -1.75 9.77 36.01 0.35 -1.40 16 28 C -0.11 -1.43 9.35 -39.61 -0.37 -1.80 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.15 1.94 7.86 -52.49 -0.41 1.53 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 41 H 0.07 1.25 7.04 -51.93 -0.37 0.89 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -33.18 378.35 -10.35 -43.53 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.95 Total: 2.84 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -5.59 Total: -14.81 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 1.30 Total: -51.90 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.93 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.10 Total: -0.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.18 -10.35 -43.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048355092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.232 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds