Wall clock time and date at job start Tue Mar 31 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31585 * 122.23211 * 2 1 4 4 C 1.29973 * 117.13250 * 180.02562 * 3 2 1 5 5 N 1.38773 * 125.36386 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99783 * 179.97438 * 5 4 3 7 7 O 1.21619 * 119.99929 * 0.02562 * 6 5 4 8 8 C 1.47326 * 119.99916 * 179.97438 * 6 5 4 9 9 C 1.40002 * 120.61755 * 359.73120 * 8 6 5 10 10 C 1.38323 * 118.37517 * 179.72791 * 9 8 6 11 11 C 1.38411 * 119.52390 * 0.54464 * 10 9 8 12 12 N 1.31817 * 121.23338 * 359.71877 * 11 10 9 13 13 C 1.32503 * 121.77072 * 359.97438 * 12 11 10 14 14 S 1.76203 * 119.83616 * 180.02562 * 13 12 11 15 15 S 1.76136 * 109.26997 * 359.97438 * 4 3 2 16 16 C 1.34665 * 122.22602 * 180.02562 * 2 1 3 17 17 S 1.76196 * 125.93108 * 359.71482 * 16 2 1 18 18 C 1.76203 * 100.00369 * 180.02562 * 17 16 2 19 19 H 1.08008 * 119.99634 * 359.97438 * 18 17 16 20 20 C 1.38416 * 120.00325 * 179.97438 * 18 17 16 21 21 N 1.31813 * 120.00141 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00110 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47035 * 60.00348 * 22 20 18 24 24 H 1.48500 * 109.47345 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47261 * 299.99911 * 22 20 18 26 26 H 1.09008 * 109.47075 * 269.98090 * 1 2 3 27 27 H 1.08998 * 109.47117 * 29.97391 * 1 2 3 28 28 H 1.08998 * 109.47675 * 149.98136 * 1 2 3 29 29 H 0.97000 * 119.99973 * 0.02562 * 5 4 3 30 30 H 1.08007 * 120.81056 * 359.97438 * 9 8 6 31 31 H 1.08002 * 120.24062 * 180.23673 * 10 9 8 32 32 H 1.08003 * 119.38264 * 179.73748 * 11 10 9 33 33 H 1.40998 * 99.99960 * 269.97912 * 14 13 12 34 34 H 0.97001 * 120.00452 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5033 0.9975 -0.0005 5 7 4.4039 2.0534 -0.0001 6 6 5.7293 1.8085 -0.0002 7 8 6.1360 0.6623 -0.0011 8 6 6.6854 2.9294 -0.0003 9 6 6.2315 4.2538 -0.0060 10 6 7.1697 5.2702 -0.0001 11 6 8.5173 4.9546 -0.0003 12 7 8.9258 3.7013 -0.0005 13 6 8.0709 2.6889 0.0000 14 16 8.6732 1.0330 0.0004 15 16 3.9345 -0.7102 -0.0003 16 6 2.2251 -1.1392 -0.0005 17 16 1.5695 -2.7747 0.0059 18 6 3.0663 -3.7044 0.0024 19 1 4.0185 -3.1947 -0.0029 20 6 3.0218 -5.0878 0.0064 21 7 1.8597 -5.7098 0.0133 22 14 4.6086 -6.0734 0.0020 23 1 5.4038 -5.7366 1.2101 24 1 4.2905 -7.5239 0.0080 25 1 5.3930 -5.7433 -1.2149 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 4.0796 2.9675 0.0010 30 1 5.1747 4.4764 -0.0108 31 1 6.8530 6.3028 -0.0004 32 1 9.2479 5.7501 0.0000 33 1 8.7561 0.8023 -1.3881 34 1 1.8284 -6.6793 0.0157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048598302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:22 Heat of formation + Delta-G solvation = 61.182496 kcal Electronic energy + Delta-G solvation = -22626.126642 eV Core-core repulsion = 19097.091639 eV Total energy + Delta-G solvation = -3529.035003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 353.007 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03044 -39.53175 -38.46306 -34.94525 -33.21515 -32.82078 -31.98069 -30.40983 -27.13090 -25.81104 -25.63394 -24.37252 -23.19436 -21.26934 -20.05294 -18.84536 -18.18610 -17.79627 -17.08321 -16.81122 -16.25597 -15.70039 -15.60035 -15.36017 -15.09839 -14.70945 -14.29294 -14.07110 -13.78471 -13.62650 -13.19545 -12.90103 -12.67921 -12.12704 -11.89918 -11.40430 -11.39918 -11.23980 -11.11646 -10.94640 -10.60753 -10.46498 -10.27738 -10.20360 -10.07754 -9.60614 -9.51251 -9.10787 -8.75377 -8.68174 -7.80469 -7.58479 -6.59880 -6.50928 -4.27818 -0.07346 0.45845 1.29844 1.43365 1.86037 2.34597 2.50312 2.59614 2.75032 3.08354 3.13654 3.16305 3.27993 3.34780 3.64872 3.95041 3.98772 4.13182 4.19418 4.40233 4.58302 4.82984 4.87305 5.03264 5.15853 5.23029 5.40509 5.83666 5.96575 6.10812 6.22261 6.43245 6.46114 6.90970 7.10480 7.19149 7.33249 7.88392 8.04174 8.49272 8.88655 10.45726 Molecular weight = 353.01amu Principal moments of inertia in cm(-1) A = 0.013150 B = 0.003303 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.732327 B = 8473.846476 C =10581.047521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.474 5.474 4 C 0.185 3.815 5 N -0.609 5.609 6 C 0.540 3.460 7 O -0.457 6.457 8 C -0.134 4.134 9 C -0.047 4.047 10 C -0.154 4.154 11 C 0.118 3.882 12 N -0.448 5.448 13 C 0.161 3.839 14 S -0.065 6.065 15 S 0.208 5.792 16 C -0.252 4.252 17 S 0.152 5.848 18 C -0.557 4.557 19 H 0.089 0.911 20 C 0.083 3.917 21 N -0.863 5.863 22 Si 0.924 3.076 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.409 0.591 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.110 0.890 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.289 20.707 -0.785 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.196 5.196 4 C -0.186 4.186 5 N -0.259 5.259 6 C 0.323 3.677 7 O -0.329 6.329 8 C -0.143 4.143 9 C -0.075 4.075 10 C -0.174 4.174 11 C -0.044 4.044 12 N -0.158 5.158 13 C -0.089 4.089 14 S 0.092 5.908 15 S 0.452 5.548 16 C -0.489 4.489 17 S 0.403 5.597 18 C -0.705 4.705 19 H 0.107 0.893 20 C -0.128 4.128 21 N -0.496 5.496 22 Si 0.749 3.251 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.192 1.192 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.247 0.753 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.186 0.814 33 H 0.074 0.926 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.310 17.954 -0.541 20.232 hybrid contribution -0.071 1.671 -0.912 1.905 sum 9.239 19.626 -1.453 21.740 Atomic orbital electron populations 1.20115 0.88069 1.02087 1.01800 1.19010 0.96661 0.84567 1.12150 1.65801 1.02770 1.32478 1.18534 1.23644 0.89796 0.92800 1.12344 1.42267 1.04207 1.08090 1.71366 1.17882 0.81246 0.89459 0.79096 1.91033 1.75559 1.20898 1.45430 1.20871 0.94618 0.94024 1.04810 1.21891 1.01156 0.91104 0.93357 1.22274 0.94117 1.00987 1.00043 1.23220 0.94882 0.93703 0.92592 1.68453 1.37732 0.99454 1.10147 1.22825 0.89593 0.98306 0.98159 1.87310 1.86222 1.04753 1.12527 1.85872 1.01522 0.95071 1.72302 1.28809 1.01491 1.06738 1.11842 1.83074 1.11023 0.84401 1.81225 1.23233 0.93587 0.94049 1.59676 0.89299 1.25019 0.98270 0.96664 0.92865 1.70004 1.24451 1.10417 1.44752 0.86090 0.81185 0.78068 0.79795 1.19071 1.20399 1.19221 0.91870 0.91974 0.91053 0.75280 0.83500 0.83261 0.81442 0.92600 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.02 36.00 0.36 -0.69 16 2 C 0.02 0.39 6.73 -83.97 -0.57 -0.18 16 3 N -0.47 -9.23 10.55 -9.81 -0.10 -9.33 16 4 C 0.18 3.44 8.39 -87.29 -0.73 2.70 16 5 N -0.61 -8.57 5.35 -12.80 -0.07 -8.64 16 6 C 0.54 7.72 7.71 -12.56 -0.10 7.62 16 7 O -0.46 -8.02 11.31 5.26 0.06 -7.96 16 8 C -0.13 -1.50 5.91 -104.64 -0.62 -2.12 16 9 C -0.05 -0.34 9.64 -38.89 -0.37 -0.71 16 10 C -0.15 -0.83 10.09 -39.49 -0.40 -1.23 16 11 C 0.12 0.81 11.16 -17.49 -0.20 0.61 16 12 N -0.45 -4.81 10.33 -11.67 -0.12 -4.93 16 13 C 0.16 1.97 7.09 -16.36 -0.12 1.85 16 14 S -0.07 -0.89 22.91 -107.50 -2.46 -3.35 16 15 S 0.21 4.49 18.34 -107.50 -1.97 2.51 16 16 C -0.25 -5.71 6.67 29.47 0.20 -5.52 16 17 S 0.15 3.78 20.74 -107.50 -2.23 1.55 16 18 C -0.56 -15.05 9.26 30.80 0.29 -14.77 16 19 H 0.09 2.38 5.97 -52.48 -0.31 2.07 16 20 C 0.08 2.21 5.49 -17.49 -0.10 2.11 16 21 N -0.86 -23.70 13.22 55.47 0.73 -22.97 16 22 Si 0.92 20.67 29.55 -169.99 -5.02 15.65 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 26 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.22 7.38 -51.93 -0.38 0.84 16 29 H 0.41 4.21 6.92 -40.82 -0.28 3.93 16 30 H 0.15 0.65 6.51 -52.48 -0.34 0.31 16 31 H 0.15 0.28 8.06 -52.49 -0.42 -0.15 16 32 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.11 1.35 9.55 96.90 0.93 2.27 16 34 H 0.28 7.10 8.32 -40.82 -0.34 6.76 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -32.37 338.83 -9.65 -42.02 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -1.22 Total: 0.65 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.35 Total: -10.31 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.44 Total: -45.87 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.06 Total: -7.96 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 7.38 SS G_CDS: -6.66 Total: 0.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.37 -9.65 -42.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048598302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.202 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds