Wall clock time and date at job start Tue Mar 31 2020 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47355 * 2 1 4 4 C 1.46505 * 119.99985 * 270.00265 * 3 2 1 5 5 C 1.50704 * 109.46688 * 270.00041 * 4 3 2 6 6 H 1.08001 * 120.00113 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99602 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99935 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99767 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46869 * 89.99864 * 9 7 5 11 11 H 1.48497 * 109.47000 * 210.00122 * 9 7 5 12 12 H 1.48504 * 109.46866 * 329.99997 * 9 7 5 13 13 C 1.34778 * 120.00093 * 89.99601 * 3 2 1 14 14 O 1.21280 * 119.99583 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00017 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46896 * 186.25878 * 15 13 3 17 17 C 1.46957 * 111.00188 * 66.36906 * 16 15 13 18 18 C 1.53044 * 109.36474 * 183.18471 * 17 16 15 19 19 N 1.46951 * 109.36775 * 301.60026 * 18 17 16 20 20 C 1.38609 * 111.00352 * 183.18912 * 19 18 17 21 21 N 1.29688 * 124.95372 * 179.97438 * 20 19 18 22 22 C 1.32117 * 116.86608 * 179.97438 * 21 20 19 23 23 C 1.50704 * 122.70873 * 179.73205 * 22 21 20 24 24 C 1.33325 * 114.58119 * 359.97438 * 22 21 20 25 25 S 1.70969 * 124.94781 * 359.97438 * 20 19 18 26 26 C 1.46953 * 110.88219 * 59.32133 * 19 18 17 27 27 C 1.46963 * 110.99699 * 190.16703 * 16 15 13 28 28 H 1.08998 * 109.47121 * 299.99935 * 1 2 3 29 29 H 1.09003 * 109.47054 * 60.00492 * 1 2 3 30 30 H 1.09003 * 109.46907 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46903 * 239.99329 * 2 1 3 32 32 H 1.09000 * 109.46608 * 120.00112 * 2 1 3 33 33 H 1.08998 * 109.46888 * 29.99260 * 4 3 2 34 34 H 1.08992 * 109.47481 * 149.99842 * 4 3 2 35 35 H 0.97009 * 119.99397 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47552 * 66.25471 * 15 13 3 37 37 H 1.09009 * 109.46721 * 306.25515 * 15 13 3 38 38 H 1.09003 * 109.48966 * 63.21825 * 17 16 15 39 39 H 1.08996 * 109.49008 * 303.15566 * 17 16 15 40 40 H 1.09002 * 109.48908 * 181.62883 * 18 17 16 41 41 H 1.09004 * 109.50418 * 61.57705 * 18 17 16 42 42 H 1.09002 * 109.47148 * 89.99355 * 23 22 21 43 43 H 1.08995 * 109.46990 * 209.99862 * 23 22 21 44 44 H 1.09001 * 109.46995 * 330.00026 * 23 22 21 45 45 H 1.08006 * 125.95048 * 179.97438 * 24 22 21 46 46 H 1.08992 * 109.49294 * 60.64339 * 26 19 18 47 47 H 1.09000 * 109.48949 * 180.71632 * 26 19 18 48 48 H 1.09000 * 109.48903 * 296.77932 * 27 16 15 49 49 H 1.08994 * 109.48761 * 56.84347 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3894 -2.8780 8 7 3.3489 3.1247 -3.6186 9 14 5.9136 2.0964 -3.4170 10 1 5.9775 0.8749 -4.2592 11 1 6.3922 3.2635 -4.2004 12 1 6.7736 1.9176 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.1656 2.2497 3.5847 17 6 1.1301 3.2921 3.5573 18 6 1.3919 4.2971 4.6814 19 7 1.3940 3.5948 5.9722 20 6 1.5575 4.4851 7.0219 21 7 1.5982 4.1562 8.2757 22 6 1.7613 5.1373 9.1454 23 6 1.8212 4.9051 10.6332 24 6 1.8634 6.3499 8.6008 25 16 1.7349 6.1771 6.8524 26 6 2.4295 2.5525 5.9997 27 6 2.1677 1.5473 4.8756 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1409 -1.1385 35 1 3.6748 3.5146 -4.4450 36 1 2.6994 0.4835 2.5800 37 1 0.9750 0.9144 2.4831 38 1 0.1505 2.8354 3.6986 39 1 1.1568 3.8060 2.5964 40 1 0.6086 5.0552 4.6811 41 1 2.3596 4.7739 4.5252 42 1 2.8550 4.7322 10.9326 43 1 1.4338 5.7810 11.1535 44 1 1.2183 4.0340 10.8896 45 1 1.9995 7.2769 9.1380 46 1 3.4090 3.0091 5.8583 47 1 2.4027 2.0385 6.9606 48 1 1.1999 1.0708 5.0319 49 1 2.9509 0.7893 4.8758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052663008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:30 Heat of formation + Delta-G solvation = 36.064241 kcal Electronic energy + Delta-G solvation = -29135.803198 eV Core-core repulsion = 25225.391189 eV Total energy + Delta-G solvation = -3910.412009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53434 -39.56700 -38.54229 -35.77868 -35.08417 -32.80979 -31.70370 -31.22895 -30.11659 -29.18346 -27.77886 -27.05334 -25.10612 -24.09079 -23.13897 -22.99683 -22.15906 -20.25341 -19.62678 -18.47309 -18.23614 -16.84402 -16.53808 -16.28975 -15.83222 -15.62637 -15.35633 -15.07134 -14.78345 -14.52493 -14.36743 -14.25938 -13.97668 -13.67005 -13.38567 -13.26294 -13.05156 -12.81705 -12.72154 -12.43762 -12.24745 -12.02067 -11.81279 -11.63729 -11.55459 -11.45361 -11.25484 -11.16329 -11.07534 -10.89949 -10.74419 -10.52736 -10.32632 -10.12345 -9.73171 -9.62145 -9.31992 -8.92570 -8.43404 -8.30704 -8.24956 -7.65037 -6.04232 -4.08583 0.57165 1.05744 1.56399 2.55491 3.04865 3.29995 3.36613 3.39120 3.44571 3.54203 4.11668 4.29425 4.45460 4.57695 4.78170 4.90830 4.93395 5.00391 5.05018 5.13152 5.16938 5.23778 5.29684 5.30178 5.31561 5.37846 5.42471 5.50971 5.54063 5.61061 5.62302 5.66317 5.74211 5.79678 5.91866 5.95671 6.00126 6.20866 6.26180 6.44598 6.49832 6.82930 6.97897 7.11491 7.44186 7.55660 7.63105 7.92631 8.23944 8.42931 8.91210 9.11902 9.56591 11.03745 Molecular weight = 352.17amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.002205 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.666515 B =12697.265608 C =13497.932235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.524 6.524 15 C 0.038 3.962 16 N -0.522 5.522 17 C 0.060 3.940 18 C 0.049 3.951 19 N -0.444 5.444 20 C 0.244 3.756 21 N -0.503 5.503 22 C 0.090 3.910 23 C -0.077 4.077 24 C -0.288 4.288 25 S 0.096 5.904 26 C 0.069 3.931 27 C 0.056 3.944 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.174 0.826 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.046 0.954 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -0.728 23.438 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.400 6.400 15 C -0.093 4.093 16 N -0.247 5.247 17 C -0.068 4.068 18 C -0.079 4.079 19 N -0.164 5.164 20 C -0.126 4.126 21 N -0.224 5.224 22 C -0.042 4.042 23 C -0.137 4.137 24 C -0.428 4.428 25 S 0.347 5.653 26 C -0.058 4.058 27 C -0.072 4.072 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.191 0.809 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.064 0.936 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.453 0.087 22.457 23.366 hybrid contribution 0.775 -0.408 0.431 0.976 sum -5.678 -0.321 22.888 23.584 Atomic orbital electron populations 1.22226 0.96884 1.01389 1.02224 1.21396 0.93405 0.84347 1.02617 1.48276 1.63973 1.13237 1.07713 1.19243 0.96214 0.93574 0.78065 1.21434 0.96939 1.31797 1.06142 0.92493 1.24936 0.97821 0.94953 0.96453 1.69933 1.35670 1.33537 1.14287 0.86508 0.84766 0.77638 0.78579 1.20692 1.21118 1.19892 1.20104 0.78918 0.87175 0.84673 1.90652 1.44681 1.17840 1.86813 1.22079 1.01393 0.95244 0.90581 1.61780 1.48429 1.13047 1.01417 1.22238 0.92322 0.93004 0.99250 1.22525 1.03136 0.96552 0.85640 1.58543 1.45501 1.11235 1.01148 1.25338 1.00224 0.94040 0.93027 1.66280 1.21597 1.35390 0.99124 1.20057 0.99896 0.87055 0.97184 1.20352 1.02977 1.03024 0.87333 1.26469 1.17558 1.02814 0.95917 1.84319 1.68716 1.06256 1.05986 1.22347 0.91764 0.91655 1.00060 1.22235 1.01536 0.95534 0.87938 0.93267 0.91987 0.92193 0.89911 0.91919 0.95111 0.93950 0.92761 0.88203 0.92367 0.94054 0.87279 0.89122 0.91120 0.90656 0.90746 0.90618 0.80908 0.92261 0.88489 0.93559 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.18 37.16 0.38 -1.77 16 2 C 0.11 1.62 5.84 -4.04 -0.02 1.60 16 3 N -0.60 -12.12 2.46 -175.06 -0.43 -12.55 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.52 -14.68 9.39 -34.44 -0.32 -15.00 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.51 10.00 7.23 -10.99 -0.08 9.92 16 14 O -0.52 -12.58 14.26 5.56 0.08 -12.50 16 15 C 0.04 0.54 3.91 -4.98 -0.02 0.52 16 16 N -0.52 -7.30 4.40 -235.91 -1.04 -8.34 16 17 C 0.06 0.82 5.27 -3.77 -0.02 0.80 16 18 C 0.05 0.60 4.64 -3.77 -0.02 0.59 16 19 N -0.44 -5.45 4.78 -175.23 -0.84 -6.29 16 20 C 0.24 3.04 6.81 -87.68 -0.60 2.44 16 21 N -0.50 -6.44 10.25 -11.36 -0.12 -6.55 16 22 C 0.09 0.96 6.74 -84.18 -0.57 0.39 16 23 C -0.08 -0.56 10.31 36.01 0.37 -0.19 16 24 C -0.29 -2.77 11.10 29.02 0.32 -2.45 16 25 S 0.10 1.03 21.17 -107.50 -2.28 -1.25 16 26 C 0.07 0.79 5.51 -3.77 -0.02 0.77 16 27 C 0.06 0.61 5.61 -3.76 -0.02 0.59 16 28 H 0.05 0.60 7.12 -51.93 -0.37 0.23 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.78 6.61 -51.93 -0.34 0.44 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.10 1.27 7.60 -51.93 -0.39 0.87 16 37 H 0.06 0.71 6.83 -51.92 -0.35 0.36 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 1.78 6.09 -51.93 -0.32 1.46 16 40 H 0.09 1.01 7.61 -51.93 -0.39 0.61 16 41 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.17 1.20 8.06 -52.48 -0.42 0.77 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 1.05 7.90 -51.93 -0.41 0.64 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -33.69 403.21 -11.55 -45.24 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.99 Total: -1.07 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.74 Total: 6.13 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -1.69 Total: -59.41 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.28 Total: -1.25 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.69 -11.55 -45.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052663008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.306 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds