Wall clock time and date at job start Tue Mar 31 2020 05:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47056 * 2 1 4 4 C 1.50703 * 109.47169 * 119.99792 * 2 1 3 5 5 H 1.08003 * 120.00406 * 119.99798 * 4 2 1 6 6 C 1.37877 * 119.99864 * 299.99873 * 4 2 1 7 7 N 1.31514 * 120.00264 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00063 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46656 * 59.99979 * 8 6 4 10 10 H 1.48497 * 109.47164 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46972 * 300.00321 * 8 6 4 12 12 N 1.46901 * 109.47332 * 239.99484 * 2 1 3 13 13 C 1.46903 * 110.99644 * 59.99850 * 12 2 1 14 14 C 1.53239 * 109.33892 * 187.25334 * 13 12 2 15 15 N 1.47075 * 108.52345 * 306.17224 * 14 13 12 16 16 C 1.34771 * 120.88374 * 231.18873 * 15 14 13 17 17 O 1.21286 * 119.99987 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00268 * 180.02562 * 16 15 14 19 19 O 1.42907 * 109.47223 * 180.02562 * 18 16 15 20 20 C 1.35921 * 116.99625 * 180.02562 * 19 18 16 21 21 C 1.38724 * 120.03731 * 179.97438 * 20 19 18 22 22 C 1.38148 * 119.95527 * 179.69388 * 21 20 19 23 23 C 1.38364 * 120.04091 * 0.26026 * 22 21 20 24 24 Cl 1.73606 * 119.95372 * 180.02562 * 23 22 21 25 25 C 1.38363 * 120.08849 * 0.02562 * 23 22 21 26 26 C 1.38145 * 120.04359 * 359.97438 * 25 23 22 27 27 C 1.47079 * 118.23547 * 51.45693 * 15 14 13 28 28 C 1.46898 * 111.00178 * 184.29996 * 12 2 1 29 29 H 1.09004 * 109.47137 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47306 * 299.99950 * 1 2 3 31 31 H 1.08992 * 109.47104 * 60.00157 * 1 2 3 32 32 H 0.97001 * 119.99934 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.49202 * 67.29704 * 13 12 2 34 34 H 1.09001 * 109.51440 * 307.22874 * 13 12 2 35 35 H 1.09004 * 109.62661 * 186.46305 * 14 13 12 36 36 H 1.08996 * 109.62709 * 65.88362 * 14 13 12 37 37 H 1.08996 * 109.47605 * 59.99657 * 18 16 15 38 38 H 1.09002 * 109.46916 * 299.99509 * 18 16 15 39 39 H 1.08002 * 120.02546 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.97887 * 180.27444 * 22 21 20 41 41 H 1.07998 * 119.98307 * 180.02562 * 25 23 22 42 42 H 1.07997 * 120.02355 * 179.97438 * 26 25 23 43 43 H 1.08998 * 109.63093 * 68.25748 * 27 15 14 44 44 H 1.09003 * 109.63208 * 188.83242 * 27 15 14 45 45 H 1.08998 * 109.49153 * 292.70847 * 28 12 2 46 46 H 1.08999 * 109.49156 * 52.79092 * 28 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8270 -0.4196 5.2205 11 1 1.8258 -2.5201 4.0079 12 7 2.0197 -0.6926 -1.1994 13 6 1.5486 -0.0265 -2.4210 14 6 1.9255 -0.8758 -3.6396 15 7 3.3713 -1.1421 -3.5944 16 6 4.1536 -0.8969 -4.6641 17 8 3.6673 -0.4503 -5.6814 18 6 5.6327 -1.1777 -4.5961 19 8 6.2399 -0.8379 -5.8443 20 6 7.5808 -1.0328 -5.9514 21 6 8.2349 -0.7247 -7.1354 22 6 9.5988 -0.9176 -7.2403 23 6 10.3115 -1.4228 -6.1673 24 17 12.0255 -1.6636 -6.3014 25 6 9.6599 -1.7362 -4.9876 26 6 8.2961 -1.5448 -4.8788 27 6 3.9397 -1.6887 -2.3529 28 6 3.4845 -0.8019 -1.1830 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.7082 1.1610 3.4844 33 1 2.0155 0.9550 -2.5033 34 1 0.4655 0.0883 -2.3786 35 1 1.6814 -0.3338 -4.5533 36 1 1.3786 -1.8182 -3.6124 37 1 5.7926 -2.2360 -4.3900 38 1 6.0795 -0.5811 -3.8008 39 1 7.6790 -0.3301 -7.9730 40 1 10.1091 -0.6737 -8.1603 41 1 10.2180 -2.1301 -4.1510 42 1 7.7878 -1.7900 -3.9580 43 1 3.5827 -2.7078 -2.2043 44 1 5.0279 -1.6845 -2.4154 45 1 3.9244 0.1904 -1.2825 46 1 3.8053 -1.2498 -0.2425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053611423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:39 Heat of formation + Delta-G solvation = -32.227943 kcal Electronic energy + Delta-G solvation = -28315.294190 eV Core-core repulsion = 24231.751258 eV Total energy + Delta-G solvation = -4083.542932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81490 -39.85667 -38.17807 -37.50152 -36.47214 -35.00975 -32.70432 -31.70993 -31.20396 -30.36181 -29.66406 -28.21255 -25.98306 -25.37838 -23.45724 -23.01345 -22.50201 -21.41950 -19.99059 -18.91870 -18.76732 -17.15613 -16.97542 -16.67425 -16.41149 -16.32694 -15.53761 -15.16998 -14.89614 -14.85719 -14.35536 -14.02921 -13.98099 -13.92389 -13.74372 -13.66840 -13.14367 -13.03163 -12.59661 -12.52451 -12.14481 -12.01457 -11.85395 -11.69920 -11.21182 -11.14490 -11.11528 -11.04945 -10.93360 -10.78758 -10.73295 -10.27912 -10.14864 -9.96881 -9.76316 -9.55076 -9.00737 -8.61876 -8.52628 -8.51092 -7.36610 -6.11335 -4.17343 0.78825 0.82821 1.80511 2.29565 2.46855 3.20287 3.23945 3.29964 3.30681 3.31845 4.16994 4.30226 4.33676 4.40927 4.57412 4.66846 4.73998 4.76104 4.92408 5.06209 5.11773 5.21074 5.29315 5.40589 5.48108 5.53363 5.55946 5.66171 5.76168 5.80825 5.83550 5.92792 6.11879 6.21906 6.36123 6.38277 6.52105 6.75020 6.90412 6.94779 7.01089 7.31192 7.41516 7.57392 7.70158 8.04055 8.05513 8.19225 8.43490 8.87691 9.48234 10.95173 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.002033 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.965515 B =13766.849575 C =15524.582998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.532 5.532 13 C 0.036 3.964 14 C 0.120 3.880 15 N -0.603 5.603 16 C 0.516 3.484 17 O -0.528 6.528 18 C 0.041 3.959 19 O -0.285 6.285 20 C 0.139 3.861 21 C -0.137 4.137 22 C -0.069 4.069 23 C -0.076 4.076 24 Cl -0.074 7.074 25 C -0.067 4.067 26 C -0.199 4.199 27 C 0.105 3.895 28 C 0.048 3.952 29 H 0.035 0.965 30 H 0.086 0.914 31 H 0.009 0.991 32 H 0.262 0.738 33 H 0.026 0.974 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.026 0.974 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.496 -5.321 -15.613 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.547 4.547 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.257 5.257 13 C -0.093 4.093 14 C -0.002 4.002 15 N -0.338 5.338 16 C 0.303 3.697 17 O -0.404 6.404 18 C -0.038 4.038 19 O -0.197 6.197 20 C 0.093 3.907 21 C -0.156 4.156 22 C -0.088 4.088 23 C -0.103 4.103 24 Cl -0.045 7.045 25 C -0.085 4.085 26 C -0.218 4.218 27 C -0.018 4.018 28 C -0.081 4.081 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.044 0.956 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.951 -5.367 -16.152 22.654 hybrid contribution 0.851 0.279 1.300 1.578 sum 15.802 -5.089 -14.852 22.275 Atomic orbital electron populations 1.21849 0.97506 0.99761 1.00008 1.19243 0.92476 0.91994 0.85532 0.98366 1.21057 1.31551 1.12383 0.89704 0.91874 1.24941 0.95112 0.95021 0.99084 1.69875 1.36486 1.22873 1.23693 0.86576 0.79030 0.79775 0.82103 1.20331 1.21346 1.20171 1.62100 1.08143 1.52932 1.02539 1.22488 1.01493 0.94820 0.90476 1.21817 0.78514 1.00641 0.99187 1.48151 1.09129 1.63586 1.12938 1.19851 0.87373 0.78875 0.83646 1.90726 1.75016 1.44376 1.30255 1.22613 0.92606 1.02330 0.86243 1.86183 1.18089 1.80637 1.34808 1.19157 0.82739 0.94469 0.94378 1.20418 0.93465 1.04706 0.97024 1.20869 0.92882 0.97072 0.97993 1.20796 0.85263 1.07552 0.96670 1.98368 1.12199 1.95730 1.98229 1.20854 0.93704 0.97561 0.96430 1.21277 0.94765 1.06314 0.99477 1.22212 0.97258 0.98932 0.83361 1.22436 0.90152 0.97587 0.97919 0.94543 0.89578 0.97228 0.92800 0.95567 0.89295 0.89304 0.90654 0.88707 0.88647 0.83948 0.84191 0.84494 0.84314 0.90065 0.90644 0.95594 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.75 37.16 0.33 -2.73 16 2 C 0.21 4.99 2.07 -68.86 -0.14 4.85 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 4 C -0.51 -12.83 7.84 -34.44 -0.27 -13.10 16 5 H 0.06 1.55 6.40 -52.48 -0.34 1.21 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.53 -10.23 4.49 -227.43 -1.02 -11.25 16 13 C 0.04 0.62 5.40 -3.70 -0.02 0.60 16 14 C 0.12 1.77 6.60 -3.60 -0.02 1.74 16 15 N -0.60 -8.34 3.00 -172.19 -0.52 -8.86 16 16 C 0.52 7.33 7.78 -10.99 -0.09 7.25 16 17 O -0.53 -9.48 15.95 -14.36 -0.23 -9.71 16 18 C 0.04 0.42 3.59 36.01 0.13 0.55 16 19 O -0.29 -3.50 9.67 -39.40 -0.38 -3.88 16 20 C 0.14 1.42 6.69 -39.22 -0.26 1.15 16 21 C -0.14 -1.25 9.99 -39.43 -0.39 -1.64 16 22 C -0.07 -0.56 9.82 -39.57 -0.39 -0.94 16 23 C -0.08 -0.64 6.32 -39.49 -0.25 -0.89 16 24 Cl -0.07 -0.60 28.95 -51.86 -1.50 -2.10 16 25 C -0.07 -0.54 9.82 -39.57 -0.39 -0.92 16 26 C -0.20 -1.68 9.04 -39.44 -0.36 -2.04 16 27 C 0.11 1.30 6.53 -3.36 -0.02 1.28 16 28 C 0.05 0.80 5.39 -3.46 -0.02 0.78 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 31 H 0.01 0.18 6.25 -51.93 -0.32 -0.14 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.50 5.95 -51.93 -0.31 1.19 16 35 H 0.09 1.32 7.06 -51.93 -0.37 0.95 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.10 0.74 7.50 -51.93 -0.39 0.35 16 38 H 0.10 0.82 7.20 -51.93 -0.37 0.45 16 39 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.14 0.89 6.30 -52.49 -0.33 0.56 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.67 6.02 -51.93 -0.31 0.36 16 45 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 1.82 5.98 -51.93 -0.31 1.50 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -30.25 381.24 -10.87 -41.12 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.31 Total: 0.06 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.26 Total: -2.59 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.91 Total: -43.74 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.61 Total: -13.60 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.25 -10.87 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053611423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.891 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds