Wall clock time and date at job start Tue Mar 31 2020 04:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31597 * 122.22485 * 2 1 4 4 C 1.29967 * 117.12651 * 179.97438 * 3 2 1 5 5 N 1.38795 * 125.36164 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00311 * 179.97438 * 5 4 3 7 7 O 1.21630 * 119.99487 * 359.97438 * 6 5 4 8 8 C 1.47330 * 120.00432 * 180.02562 * 6 5 4 9 9 C 1.36446 * 127.19560 * 270.02055 * 8 6 5 10 10 C 1.50703 * 125.80278 * 0.02562 * 9 8 6 11 11 O 1.33665 * 108.39204 * 179.73661 * 9 8 6 12 12 C 1.34216 * 110.90645 * 0.26594 * 11 9 8 13 13 C 1.50701 * 125.43134 * 180.02562 * 12 11 9 14 14 C 1.34174 * 109.13613 * 359.97438 * 12 11 9 15 15 C 1.50695 * 127.02218 * 179.97438 * 14 12 11 16 16 S 1.76130 * 109.27296 * 0.23727 * 4 3 2 17 17 C 1.34650 * 122.22944 * 179.97438 * 2 1 3 18 18 S 1.76193 * 125.93318 * 359.97438 * 17 2 1 19 19 C 1.76196 * 100.00354 * 179.97438 * 18 17 2 20 20 H 1.08001 * 119.99927 * 0.02562 * 19 18 17 21 21 C 1.38419 * 120.00224 * 179.97438 * 19 18 17 22 22 N 1.31812 * 120.00098 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00270 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46845 * 89.99531 * 23 21 19 25 25 H 1.48493 * 109.47495 * 210.00225 * 23 21 19 26 26 H 1.48502 * 109.46664 * 330.00097 * 23 21 19 27 27 H 1.08999 * 109.47201 * 90.03643 * 1 2 3 28 28 H 1.09007 * 109.46952 * 210.02608 * 1 2 3 29 29 H 1.08999 * 109.47197 * 330.02781 * 1 2 3 30 30 H 0.97004 * 120.00016 * 359.97438 * 5 4 3 31 31 H 1.09002 * 109.47152 * 179.71339 * 10 9 8 32 32 H 1.09001 * 109.46980 * 59.71439 * 10 9 8 33 33 H 1.09004 * 109.47113 * 299.71420 * 10 9 8 34 34 H 1.08997 * 109.47062 * 359.97438 * 13 12 11 35 35 H 1.09005 * 109.46608 * 119.97409 * 13 12 11 36 36 H 1.09000 * 109.47586 * 239.97496 * 13 12 11 37 37 H 1.09009 * 109.46990 * 90.03135 * 15 14 12 38 38 H 1.08999 * 109.47009 * 210.02598 * 15 14 12 39 39 H 1.08995 * 109.47577 * 330.02682 * 15 14 12 40 40 H 0.97005 * 120.00358 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2088 1.1133 0.0000 4 6 3.5033 0.9978 0.0005 5 7 4.4040 2.0538 0.0001 6 6 5.7294 1.8092 0.0012 7 8 6.1361 0.6629 0.0031 8 6 6.6854 2.9301 0.0014 9 6 7.2212 3.5574 -1.0855 10 6 6.9356 3.2221 -2.5267 11 8 8.0377 4.5240 -0.6545 12 6 8.0705 4.5607 0.6867 13 6 8.8828 5.5226 1.5148 14 6 7.2638 3.6050 1.1727 15 6 7.0007 3.2905 2.6228 16 16 3.9346 -0.7099 -0.0058 17 6 2.2252 -1.1390 0.0005 18 16 1.5698 -2.7745 0.0019 19 6 3.0666 -3.7041 0.0012 20 1 4.0188 -3.1944 0.0006 21 6 3.0222 -5.0875 0.0025 22 7 4.1420 -5.7829 0.0024 23 14 1.3753 -5.9693 0.0042 24 1 0.9381 -6.2040 -1.3954 25 1 1.5115 -7.2711 0.7054 26 1 0.3671 -5.1332 0.7041 27 1 -0.3633 -0.0007 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5134 30 1 4.0795 2.9680 -0.0010 31 1 7.5009 3.8920 -3.1745 32 1 5.8699 3.3404 -2.7229 33 1 7.2293 2.1912 -2.7250 34 1 9.4423 6.1865 0.8559 35 1 8.2165 6.1125 2.1444 36 1 9.5771 4.9647 2.1432 37 1 6.1520 3.8776 2.9738 38 1 6.7772 2.2290 2.7296 39 1 7.8826 3.5373 3.2139 40 1 4.1109 -6.7525 0.0037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053650648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:34 Heat of formation + Delta-G solvation = 7.142081 kcal Electronic energy + Delta-G solvation = -25375.937960 eV Core-core repulsion = 21603.065723 eV Total energy + Delta-G solvation = -3772.872237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.86654 -39.93298 -38.57634 -34.75930 -34.52034 -33.34211 -32.75443 -30.61853 -30.04643 -28.43168 -27.17720 -25.90202 -25.41034 -24.21548 -22.38932 -20.91257 -19.99383 -19.22413 -18.06639 -17.69274 -16.94458 -16.68652 -16.02927 -15.77735 -15.33804 -15.27494 -14.74095 -14.29328 -14.04504 -13.84137 -13.71566 -13.56992 -13.23085 -13.19841 -13.03383 -12.98315 -12.77724 -12.71820 -12.47121 -12.18133 -12.01685 -11.57565 -11.52171 -11.35432 -11.29936 -10.90038 -10.63280 -10.14920 -10.08768 -9.63136 -9.46494 -9.17676 -8.86015 -8.77843 -8.54808 -7.90006 -6.73101 -6.55373 -4.28763 1.28021 1.31934 1.77853 1.92597 2.34454 2.41009 2.50916 2.79273 2.99938 3.10395 3.19887 3.37718 3.51780 4.03036 4.15274 4.48377 4.49893 4.57153 4.81332 4.84482 4.86571 5.02328 5.08892 5.12932 5.16865 5.26167 5.40795 5.45288 5.47937 5.64429 5.70106 5.85746 5.89117 6.05124 6.12171 6.19663 6.33914 6.39088 6.82956 6.86655 7.12300 7.67459 7.93533 8.24296 8.41876 8.84225 10.52494 Molecular weight = 352.07amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.002694 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.793413 B =10389.855956 C =11057.739918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.032 3.968 3 N -0.479 5.479 4 C 0.192 3.808 5 N -0.607 5.607 6 C 0.587 3.413 7 O -0.491 6.491 8 C -0.225 4.225 9 C 0.053 3.947 10 C -0.085 4.085 11 O -0.169 6.169 12 C -0.015 4.015 13 C -0.071 4.071 14 C -0.140 4.140 15 C -0.088 4.088 16 S 0.232 5.768 17 C -0.239 4.239 18 S 0.055 5.945 19 C -0.545 4.545 20 H 0.105 0.895 21 C 0.102 3.898 22 N -0.857 5.857 23 Si 0.852 3.148 24 H -0.261 1.261 25 H -0.265 1.265 26 H -0.236 1.236 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.416 0.584 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 21.555 0.614 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.201 5.201 4 C -0.178 4.178 5 N -0.256 5.256 6 C 0.372 3.628 7 O -0.364 6.364 8 C -0.229 4.229 9 C 0.001 3.999 10 C -0.141 4.141 11 O -0.067 6.067 12 C -0.064 4.064 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.145 4.145 16 S 0.477 5.523 17 C -0.475 4.475 18 S 0.303 5.697 19 C -0.693 4.693 20 H 0.122 0.878 21 C -0.110 4.110 22 N -0.490 5.490 23 Si 0.676 3.324 24 H -0.185 1.185 25 H -0.190 1.190 26 H -0.160 1.160 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.253 0.747 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.045 20.134 0.441 20.761 hybrid contribution -0.292 0.255 0.067 0.393 sum 4.753 20.389 0.507 20.942 Atomic orbital electron populations 1.20150 0.87974 1.02224 1.01924 1.19110 0.96780 0.84570 1.10590 1.65880 1.02814 1.32169 1.19256 1.23950 0.90004 0.93356 1.10525 1.42391 1.04117 1.08178 1.70899 1.17367 0.80633 0.88289 0.76507 1.90837 1.77188 1.21527 1.46812 1.20587 1.06278 1.02277 0.93778 1.22497 0.92399 0.88886 0.96070 1.20526 1.03564 1.03694 0.86306 1.83686 1.54056 1.46316 1.22601 1.21972 1.03082 1.01271 0.80049 1.20311 0.98550 0.96446 0.97381 1.21025 1.00437 0.97168 0.95594 1.20241 1.02145 1.02812 0.89279 1.86212 1.00594 0.94337 1.71130 1.28171 1.01682 1.04507 1.13122 1.82451 1.13461 0.89139 1.84699 1.22663 0.92405 0.94493 1.59758 0.87754 1.24742 0.97375 0.96233 0.92623 1.70013 1.26465 1.07676 1.44880 0.86814 0.83872 0.81372 0.80373 1.18547 1.18984 1.15993 0.91689 0.91079 0.91708 0.74654 0.89665 0.88972 0.88612 0.90447 0.89564 0.89543 0.90918 0.91022 0.90978 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.02 36.01 0.36 -0.69 16 2 C 0.03 0.64 6.73 -83.96 -0.57 0.08 16 3 N -0.48 -9.41 10.55 -9.80 -0.10 -9.52 16 4 C 0.19 3.69 8.39 -87.27 -0.73 2.95 16 5 N -0.61 -9.34 5.39 -12.80 -0.07 -9.41 16 6 C 0.59 9.39 7.37 -12.56 -0.09 9.30 16 7 O -0.49 -9.81 14.62 5.25 0.08 -9.73 16 8 C -0.22 -2.97 6.07 -103.28 -0.63 -3.59 16 9 C 0.05 0.61 7.38 -34.95 -0.26 0.35 16 10 C -0.08 -0.74 10.18 36.01 0.37 -0.37 16 11 O -0.17 -1.86 10.52 7.62 0.08 -1.78 16 12 C -0.02 -0.15 7.28 -35.74 -0.26 -0.41 16 13 C -0.07 -0.40 9.93 36.01 0.36 -0.04 16 14 C -0.14 -1.61 6.38 -102.49 -0.65 -2.26 16 15 C -0.09 -0.86 10.15 36.00 0.37 -0.49 16 16 S 0.23 5.20 18.34 -107.50 -1.97 3.23 16 17 C -0.24 -5.41 6.67 29.46 0.20 -5.21 16 18 S 0.06 1.32 18.70 -107.50 -2.01 -0.69 16 19 C -0.54 -15.20 9.80 30.80 0.30 -14.90 16 20 H 0.10 3.13 6.21 -52.49 -0.33 2.80 16 21 C 0.10 2.82 5.49 -17.49 -0.10 2.72 16 22 N -0.86 -24.81 13.98 55.47 0.78 -24.03 16 23 Si 0.85 19.68 27.73 -169.99 -4.71 14.96 16 24 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.24 -5.20 6.73 56.52 0.38 -4.82 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.16 7.37 -51.93 -0.38 0.78 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.42 5.12 8.80 -40.82 -0.36 4.76 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 40 H 0.28 7.35 8.32 -40.82 -0.34 7.01 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -33.32 372.66 -8.52 -41.84 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.86 Total: 2.08 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.34 Total: -12.56 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.60 Total: -42.96 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.16 Total: -11.51 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.71 Total: 14.96 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -3.98 Total: 2.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.32 -8.52 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053650648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.979 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds