Wall clock time and date at job start Tue Mar 31 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99885 * 2 1 4 4 H 1.48499 * 109.47045 * 240.00235 * 3 2 1 5 5 H 1.48496 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47111 * 120.00069 * 3 2 1 7 7 C 1.38945 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00145 * 175.01245 * 7 2 1 9 9 N 1.37100 * 120.00326 * 355.01455 * 7 2 1 10 10 C 1.46508 * 119.99296 * 5.72710 * 9 7 2 11 11 C 1.50701 * 109.46810 * 265.46073 * 10 9 7 12 12 C 1.38230 * 120.00487 * 274.96614 * 11 10 9 13 13 C 1.38237 * 120.00110 * 179.76809 * 12 11 10 14 14 C 1.38235 * 119.99744 * 0.50930 * 13 12 11 15 15 C 1.38230 * 119.99944 * 359.74527 * 14 13 12 16 16 C 1.38234 * 120.00263 * 0.02562 * 15 14 13 17 17 C 1.34767 * 120.00361 * 185.72741 * 9 7 2 18 18 O 1.21292 * 120.00011 * 179.97438 * 17 9 7 19 19 C 1.50698 * 120.00146 * 359.97438 * 17 9 7 20 20 C 1.52998 * 109.47479 * 179.97438 * 19 17 9 21 21 C 1.50698 * 109.47479 * 180.02562 * 20 19 17 22 22 C 1.38247 * 119.93079 * 270.02232 * 21 20 19 23 23 C 1.38241 * 120.14815 * 179.74647 * 22 21 20 24 24 C 1.38548 * 120.02363 * 0.43168 * 23 22 21 25 25 C 1.39271 * 119.82767 * 359.57258 * 24 23 22 26 26 C 1.38244 * 119.92785 * 89.99928 * 21 20 19 27 27 O 1.36505 * 108.63938 * 180.24920 * 25 24 23 28 28 C 1.43983 * 105.48230 * 342.71670 * 27 25 24 29 29 O 1.36501 * 131.53278 * 179.87557 * 24 23 22 30 30 H 0.97005 * 120.00418 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47357 * 25.46386 * 10 9 7 32 32 H 1.09004 * 109.46631 * 145.46817 * 10 9 7 33 33 H 1.07999 * 119.99699 * 0.02562 * 12 11 10 34 34 H 1.07995 * 119.99819 * 180.23595 * 13 12 11 35 35 H 1.07998 * 119.99429 * 179.72180 * 14 13 12 36 36 H 1.08007 * 120.00061 * 179.97438 * 15 14 13 37 37 H 1.08004 * 119.99908 * 179.97438 * 16 15 14 38 38 H 1.09001 * 109.47189 * 60.00209 * 19 17 9 39 39 H 1.08998 * 109.47196 * 300.00249 * 19 17 9 40 40 H 1.09005 * 109.47113 * 59.99863 * 20 19 17 41 41 H 1.08998 * 109.47201 * 300.00357 * 20 19 17 42 42 H 1.08008 * 119.92892 * 0.02562 * 22 21 20 43 43 H 1.07995 * 119.98862 * 180.33366 * 23 22 21 44 44 H 1.07995 * 119.98427 * 0.02934 * 26 21 20 45 45 H 1.09007 * 110.57246 * 268.55203 * 28 27 25 46 46 H 1.09006 * 110.57056 * 145.68009 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0858 -1.2051 -0.0808 9 7 1.3273 -2.3884 0.1042 10 6 -0.1376 -2.3946 0.0881 11 6 -0.6556 -2.3760 1.5032 12 6 -0.7910 -3.5590 2.2053 13 6 -1.2616 -3.5414 3.5050 14 6 -1.6068 -2.3418 4.0988 15 6 -1.4764 -1.1594 3.3949 16 6 -1.0013 -1.1765 2.0969 17 6 2.0049 -3.5474 0.2210 18 8 1.4019 -4.5958 0.3133 19 6 3.5118 -3.5410 0.2371 20 6 4.0265 -4.9749 0.3787 21 6 5.5334 -4.9684 0.3953 22 6 6.2368 -5.0778 -0.7898 23 6 7.6192 -5.0671 -0.7802 24 6 8.3033 -4.9555 0.4194 25 6 7.5946 -4.8454 1.6133 26 6 6.2094 -4.8526 1.5956 27 8 8.4862 -4.7439 2.6420 28 6 9.7423 -5.2031 2.1088 29 8 9.6387 -4.9233 0.7002 30 1 -0.4851 0.8401 -0.0004 31 1 -0.4989 -1.5138 -0.4427 32 1 -0.4915 -3.2936 -0.4166 33 1 -0.5252 -4.4966 1.7399 34 1 -1.3638 -4.4653 4.0548 35 1 -1.9787 -2.3286 5.1127 36 1 -1.7464 -0.2221 3.8587 37 1 -0.8998 -0.2526 1.5467 38 1 3.8637 -2.9444 1.0787 39 1 3.8833 -3.1115 -0.6933 40 1 3.6747 -5.5719 -0.4627 41 1 3.6551 -5.4040 1.3092 42 1 5.7052 -5.1673 -1.7257 43 1 8.1660 -5.1473 -1.7080 44 1 5.6573 -4.7673 2.5199 45 1 9.8624 -6.2731 2.2789 46 1 10.5710 -4.6487 2.5494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054246142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:16 Heat of formation + Delta-G solvation = -22.812570 kcal Electronic energy + Delta-G solvation = -30496.351648 eV Core-core repulsion = 26317.931184 eV Total energy + Delta-G solvation = -4178.420463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20971 -39.14297 -38.33290 -37.61414 -36.35909 -35.13095 -33.12812 -31.73238 -30.87074 -30.46954 -29.81846 -28.95700 -26.20996 -25.72246 -24.88484 -23.45253 -22.98394 -21.57019 -21.43246 -20.25091 -19.06985 -17.98396 -17.56279 -17.42047 -17.11172 -16.47173 -15.99278 -15.62947 -14.87923 -14.52799 -14.51133 -14.40688 -14.25105 -13.98084 -13.89970 -13.83111 -13.50227 -13.13783 -13.06243 -12.77077 -12.62982 -12.48785 -12.04866 -11.78241 -11.71461 -11.58803 -11.47803 -11.18040 -11.05011 -10.78981 -10.60628 -10.47109 -10.44406 -10.38584 -10.25846 -9.77544 -9.26608 -8.86024 -8.55066 -8.02401 -7.96750 -7.82906 -7.68266 -6.13243 -4.05141 1.12019 1.20863 2.28050 2.39484 2.66993 3.04570 3.14016 3.15456 3.33467 3.55593 3.81335 3.96919 4.44642 4.49204 4.57067 4.69693 4.88184 4.96765 5.02813 5.09712 5.19799 5.27375 5.46062 5.66746 5.68876 5.72742 5.83151 5.88897 5.96580 6.05900 6.08477 6.22197 6.27244 6.33078 6.38885 6.41060 6.50639 6.64106 6.67600 6.72776 6.82679 7.00138 7.06471 7.08095 7.22990 7.39298 7.45892 7.58163 7.79623 7.96632 8.09347 8.51089 8.99854 9.44957 9.83690 10.48128 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.002779 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.985031 B =10072.228578 C =11058.186188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.101 0.899 9 N -0.440 5.440 10 C 0.113 3.887 11 C -0.063 4.063 12 C -0.113 4.113 13 C -0.147 4.147 14 C -0.139 4.139 15 C -0.152 4.152 16 C -0.096 4.096 17 C 0.457 3.543 18 O -0.603 6.603 19 C -0.116 4.116 20 C -0.060 4.060 21 C -0.058 4.058 22 C -0.107 4.107 23 C -0.097 4.097 24 C 0.016 3.984 25 C 0.031 3.969 26 C -0.097 4.097 27 O -0.311 6.311 28 C 0.214 3.786 29 O -0.313 6.313 30 H 0.268 0.732 31 H 0.178 0.822 32 H 0.037 0.963 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.169 0.831 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.527 -5.420 1.497 11.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.173 4.173 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.427 4.427 8 H 0.119 0.881 9 N -0.157 5.157 10 C -0.009 4.009 11 C -0.064 4.064 12 C -0.132 4.132 13 C -0.165 4.165 14 C -0.157 4.157 15 C -0.171 4.171 16 C -0.114 4.114 17 C 0.245 3.755 18 O -0.490 6.490 19 C -0.156 4.156 20 C -0.098 4.098 21 C -0.058 4.058 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.028 4.028 25 C -0.013 4.013 26 C -0.115 4.115 27 O -0.227 6.227 28 C 0.102 3.898 29 O -0.229 6.229 30 H 0.082 0.918 31 H 0.193 0.807 32 H 0.055 0.945 33 H 0.139 0.861 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.186 0.814 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.157 0.843 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.098 0.902 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.285 -5.614 1.606 11.827 hybrid contribution 0.816 0.718 0.550 1.218 sum 11.102 -4.895 2.156 12.323 Atomic orbital electron populations 1.69145 1.05615 1.25867 1.51027 1.25183 0.95623 0.99744 0.96797 0.85895 0.78924 0.80417 0.78980 1.19871 1.20550 1.19961 1.19869 0.92850 0.83171 1.46827 0.88122 1.43845 1.05349 1.05105 1.61378 1.21846 0.80037 1.05574 0.93403 1.20353 0.96278 0.92072 0.97712 1.21437 0.98355 0.99128 0.94240 1.20934 1.02625 0.97039 0.95927 1.20936 1.02454 0.93379 0.98960 1.21220 1.02720 0.96885 0.96243 1.22652 0.93476 1.01708 0.93597 1.20113 0.89202 0.84022 0.82129 1.90503 1.70462 1.31406 1.56613 1.21404 0.94569 0.96136 1.03530 1.20344 0.87566 0.97586 1.04319 1.19869 0.96793 0.97585 0.91546 1.20904 0.92190 1.00802 0.98624 1.20048 0.93599 1.02946 0.94962 1.19771 0.82156 1.05548 0.95305 1.19771 0.92138 1.03966 0.85385 1.20036 0.88822 1.03084 0.99575 1.87362 1.18730 1.82514 1.34081 1.25564 0.87512 1.00345 0.76420 1.87330 1.21390 1.88064 1.26139 0.91826 0.80654 0.94485 0.86100 0.87773 0.87962 0.87769 0.81443 0.90029 0.90024 0.90063 0.90326 0.84274 0.84910 0.84658 0.90172 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -19.86 5.74 55.50 0.32 -19.55 16 2 C 0.02 0.55 5.45 -17.47 -0.10 0.46 16 3 Si 0.93 18.28 29.56 -169.99 -5.02 13.25 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.30 -6.99 9.39 -14.93 -0.14 -7.13 16 8 H 0.10 2.21 6.32 -52.48 -0.33 1.88 16 9 N -0.44 -10.44 2.62 -116.09 -0.30 -10.74 16 10 C 0.11 2.70 4.97 -5.19 -0.03 2.67 16 11 C -0.06 -1.45 5.43 -104.63 -0.57 -2.01 16 12 C -0.11 -2.48 9.40 -39.58 -0.37 -2.85 16 13 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 14 C -0.14 -2.58 10.05 -39.59 -0.40 -2.98 16 15 C -0.15 -2.98 10.05 -39.59 -0.40 -3.38 16 16 C -0.10 -2.11 9.21 -39.58 -0.36 -2.48 16 17 C 0.46 10.29 7.60 -10.99 -0.08 10.20 16 18 O -0.60 -14.66 14.08 5.55 0.08 -14.58 16 19 C -0.12 -2.10 4.06 -27.88 -0.11 -2.22 16 20 C -0.06 -0.94 4.63 -27.88 -0.13 -1.07 16 21 C -0.06 -0.79 5.13 -104.62 -0.54 -1.33 16 22 C -0.11 -1.31 9.69 -39.58 -0.38 -1.69 16 23 C -0.10 -1.16 10.06 -39.47 -0.40 -1.55 16 24 C 0.02 0.22 7.15 -39.08 -0.28 -0.06 16 25 C 0.03 0.44 7.15 -39.09 -0.28 0.16 16 26 C -0.10 -1.35 9.71 -39.47 -0.38 -1.73 16 27 O -0.31 -4.08 11.40 -45.71 -0.52 -4.60 16 28 C 0.21 2.03 8.89 101.05 0.90 2.92 16 29 O -0.31 -3.88 11.40 -45.69 -0.52 -4.40 16 30 H 0.27 5.80 8.08 -40.82 -0.33 5.47 16 31 H 0.18 4.31 4.56 -81.49 -0.37 3.94 16 32 H 0.04 0.90 7.54 -51.93 -0.39 0.51 16 33 H 0.12 2.75 6.81 -52.49 -0.36 2.40 16 34 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.17 3.76 4.56 -52.61 -0.24 3.52 16 38 H 0.08 1.48 7.98 -51.93 -0.41 1.07 16 39 H 0.08 1.40 7.82 -51.93 -0.41 0.99 16 40 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 41 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 42 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 378.57 15.07 5.71 5.71 Total: -1.00 -27.71 378.57 -10.57 -38.28 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -5.86 Total: 13.97 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -4.45 Total: -17.34 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 0.01 Total: -30.29 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.96 Total: -23.59 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.71 -10.57 -38.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054246142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.471 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds