Wall clock time and date at job start Tue Mar 31 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39727 * 125.77695 * 2 1 4 4 C 1.36144 * 107.85918 * 180.02562 * 3 2 1 5 5 N 1.39376 * 126.26620 * 180.26388 * 4 3 2 6 6 C 1.34779 * 119.99996 * 359.68286 * 5 4 3 7 7 O 1.21568 * 119.99638 * 0.02562 * 6 5 4 8 8 C 1.47807 * 120.00309 * 179.97438 * 6 5 4 9 9 C 1.39584 * 120.14513 * 359.72484 * 8 6 5 10 10 C 1.37959 * 119.85299 * 179.79114 * 9 8 6 11 11 C 1.38361 * 120.14106 * 0.48310 * 10 9 8 12 12 C 1.50703 * 119.84932 * 179.76667 * 11 10 9 13 13 F 1.39902 * 109.46978 * 269.98276 * 12 11 10 14 14 F 1.39896 * 109.46929 * 29.98163 * 12 11 10 15 15 F 1.39898 * 109.46829 * 149.98260 * 12 11 10 16 16 C 1.38364 * 120.30051 * 359.75163 * 11 10 9 17 17 C 1.37955 * 120.14519 * 0.02562 * 16 11 10 18 18 N 1.35814 * 107.47311 * 359.97438 * 4 3 2 19 19 C 1.46502 * 126.09056 * 179.97438 * 18 4 3 20 20 C 1.50693 * 109.46939 * 90.00481 * 19 18 4 21 21 H 1.07997 * 120.00549 * 359.97438 * 20 19 18 22 22 C 1.37886 * 119.99903 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99842 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00094 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46981 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47210 * 119.99753 * 24 22 20 27 27 H 1.48501 * 109.47098 * 240.00243 * 24 22 20 28 28 N 1.30835 * 125.77646 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46891 * 269.97553 * 1 2 3 30 30 H 1.08999 * 109.47444 * 29.97659 * 1 2 3 31 31 H 1.09003 * 109.47301 * 149.97659 * 1 2 3 32 32 H 1.08001 * 126.07108 * 0.03108 * 3 2 1 33 33 H 0.97001 * 120.00796 * 179.68705 * 5 4 3 34 34 H 1.08001 * 120.07966 * 0.02562 * 9 8 6 35 35 H 1.07993 * 119.92863 * 180.21246 * 10 9 8 36 36 H 1.07997 * 119.92872 * 179.97438 * 16 11 10 37 37 H 1.07999 * 120.07436 * 180.02562 * 17 16 11 38 38 H 1.09003 * 109.46453 * 210.00334 * 19 18 4 39 39 H 1.08988 * 109.47458 * 329.99911 * 19 18 4 40 40 H 0.96996 * 119.99580 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6193 0.7148 -0.0006 5 7 4.7495 1.5304 0.0044 6 6 4.6129 2.8712 0.0040 7 8 3.5039 3.3692 -0.0002 8 6 5.8114 3.7362 0.0099 9 6 7.0862 3.1677 0.0216 10 6 8.2008 3.9807 0.0226 11 6 8.0569 5.3568 0.0222 12 6 9.2789 6.2387 0.0287 13 9 9.6500 6.5117 1.3497 14 9 10.3290 5.5853 -0.6252 15 9 8.9920 7.4378 -0.6324 16 6 6.7962 5.9269 0.0155 17 6 5.6734 5.1253 0.0098 18 7 3.6087 -0.6433 -0.0004 19 6 4.7859 -1.5155 -0.0013 20 6 5.1907 -1.8144 1.4191 21 1 4.6279 -1.3962 2.2405 22 6 6.2799 -2.6218 1.6702 23 7 6.9651 -3.1315 0.6699 24 14 6.7822 -2.9918 3.4309 25 1 5.8560 -2.3026 4.3651 26 1 6.7228 -4.4569 3.6652 27 1 8.1674 -2.5092 3.6623 28 7 2.2719 -1.0615 0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.9874 2.1599 0.0005 33 1 5.6344 1.1331 0.0081 34 1 7.1999 2.0937 0.0260 35 1 9.1876 3.5421 0.0282 36 1 6.6909 7.0017 0.0156 37 1 4.6899 5.5715 0.0042 38 1 4.5474 -2.4469 -0.5149 39 1 5.6071 -1.0169 -0.5160 40 1 7.7314 -3.6992 0.8466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054537843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:22 Heat of formation + Delta-G solvation = -81.919428 kcal Electronic energy + Delta-G solvation = -30130.512535 eV Core-core repulsion = 25304.131922 eV Total energy + Delta-G solvation = -4826.380613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.48799 -48.00430 -47.94333 -41.09812 -40.05452 -38.57565 -34.97711 -33.87353 -32.66401 -32.10493 -31.51924 -29.24604 -28.46133 -26.71485 -26.08222 -23.62616 -23.30282 -22.81946 -21.38395 -19.96906 -19.55198 -18.87172 -18.79735 -18.66049 -17.51185 -16.90264 -16.53826 -15.85282 -15.37014 -15.23444 -15.08182 -14.81471 -14.70270 -14.60523 -14.40989 -14.26761 -14.19618 -14.11100 -14.09634 -13.83249 -13.56382 -13.12785 -12.93001 -12.82128 -12.56689 -12.11756 -12.03465 -11.85391 -11.66534 -11.63711 -11.12552 -10.96458 -10.52250 -10.40699 -10.11879 -9.85324 -9.68142 -9.65899 -9.52917 -8.78521 -7.98988 -7.54599 -6.39606 -4.48412 0.09146 0.83672 2.16061 2.28366 2.60988 2.85076 3.10942 3.20396 3.25669 3.32364 3.33517 3.59559 3.65087 3.67087 4.07284 4.19147 4.32248 4.35077 4.44841 4.77767 4.91196 4.93753 5.12266 5.29051 5.45132 5.54000 5.65014 5.68927 5.81977 5.99574 6.06399 6.09477 6.17486 6.24228 6.31223 6.57473 6.75403 6.97030 7.39530 7.47680 7.54499 7.72547 7.77630 8.11894 8.54062 8.63796 9.19789 10.67416 Molecular weight = 353.11amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.003059 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.390543 B = 9150.254705 C =11649.070942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.289 4.289 4 C 0.297 3.703 5 N -0.631 5.631 6 C 0.561 3.439 7 O -0.505 6.505 8 C -0.093 4.093 9 C -0.085 4.085 10 C -0.074 4.074 11 C -0.163 4.163 12 C 0.508 3.492 13 F -0.174 7.174 14 F -0.175 7.175 15 F -0.176 7.176 16 C -0.079 4.079 17 C -0.059 4.059 18 N -0.345 5.345 19 C 0.256 3.744 20 C -0.542 4.542 21 H 0.066 0.934 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.280 1.280 28 N -0.280 5.280 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.416 0.584 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 18.162 -2.873 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.321 4.321 4 C 0.075 3.925 5 N -0.277 5.277 6 C 0.348 3.652 7 O -0.379 6.379 8 C -0.096 4.096 9 C -0.103 4.103 10 C -0.092 4.092 11 C -0.165 4.165 12 C 0.454 3.546 13 F -0.156 7.156 14 F -0.156 7.156 15 F -0.157 7.157 16 C -0.097 4.097 17 C -0.078 4.078 18 N -0.131 5.131 19 C 0.138 3.862 20 C -0.580 4.580 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.206 1.206 28 N -0.106 5.106 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.254 0.746 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.360 17.068 -2.930 17.478 hybrid contribution 1.382 0.326 0.981 1.726 sum 3.742 17.394 -1.950 17.899 Atomic orbital electron populations 1.20031 0.87493 1.02398 1.02221 1.22028 0.96585 0.90945 1.01898 1.21276 0.89010 1.00516 1.21309 1.17969 0.87737 0.83356 1.03422 1.42589 1.08605 1.05359 1.71191 1.18014 0.88984 0.81040 0.77188 1.90730 1.25734 1.73835 1.47634 1.20070 0.92811 0.94391 1.02356 1.21478 0.90972 1.01023 0.96844 1.20923 1.00350 0.91295 0.96594 1.20210 0.92871 0.94610 1.08796 1.18284 0.83566 0.78790 0.73952 1.93246 1.92481 1.94136 1.35712 1.93210 1.60156 1.80893 1.81343 1.93198 1.93408 1.48080 1.81055 1.20929 0.90376 1.01070 0.97287 1.21268 0.99759 0.91505 0.95232 1.49528 1.06533 1.01970 1.55018 1.19640 0.77773 0.89760 0.98981 1.21385 1.13381 1.31929 0.91326 0.91602 1.24936 0.95684 0.94809 0.98191 1.69924 1.19206 1.32519 1.31001 0.86315 0.78382 0.78536 0.83598 1.19529 1.20474 1.20585 1.77353 0.86114 1.21799 1.25302 0.91258 0.91094 0.91497 0.82035 0.74586 0.83764 0.83685 0.83826 0.83067 0.92420 0.93899 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.52 16 2 C 0.05 0.98 7.20 -82.46 -0.59 0.39 16 3 C -0.29 -5.72 9.58 -39.78 -0.38 -6.10 16 4 C 0.30 6.05 7.68 -152.74 -1.17 4.88 16 5 N -0.63 -10.54 5.36 -12.21 -0.07 -10.60 16 6 C 0.56 8.46 7.74 -12.35 -0.10 8.37 16 7 O -0.50 -8.64 13.47 5.31 0.07 -8.57 16 8 C -0.09 -1.08 5.87 -104.97 -0.62 -1.70 16 9 C -0.08 -0.87 9.54 -39.18 -0.37 -1.24 16 10 C -0.07 -0.68 9.38 -39.64 -0.37 -1.05 16 11 C -0.16 -1.49 5.46 -104.53 -0.57 -2.06 16 12 C 0.51 4.62 3.36 36.01 0.12 4.74 16 13 F -0.17 -1.71 17.30 2.25 0.04 -1.67 16 14 F -0.17 -1.66 16.45 2.25 0.04 -1.63 16 15 F -0.18 -1.59 16.45 2.25 0.04 -1.55 16 16 C -0.08 -0.67 9.38 -39.64 -0.37 -1.04 16 17 C -0.06 -0.58 9.60 -39.18 -0.38 -0.95 16 18 N -0.34 -7.85 3.62 -61.45 -0.22 -8.07 16 19 C 0.26 6.20 6.02 -5.20 -0.03 6.17 16 20 C -0.54 -14.14 9.39 -34.44 -0.32 -14.47 16 21 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.75 5.46 -17.81 -0.10 1.65 16 23 N -0.89 -23.60 13.29 55.43 0.74 -22.86 16 24 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 N -0.28 -6.37 12.56 33.64 0.42 -5.95 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.16 3.07 5.83 -52.49 -0.31 2.76 16 33 H 0.42 6.32 6.03 -40.82 -0.25 6.08 16 34 H 0.14 1.37 6.41 -52.49 -0.34 1.03 16 35 H 0.15 1.10 7.59 -52.49 -0.40 0.70 16 36 H 0.14 0.90 7.59 -52.49 -0.40 0.50 16 37 H 0.15 1.37 7.65 -52.49 -0.40 0.97 16 38 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.04 0.99 7.53 -51.94 -0.39 0.60 16 40 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -30.42 362.78 -7.09 -37.51 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.71 Total: 5.70 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -4.88 Total: -2.94 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.87 Total: -47.49 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.07 Total: -8.57 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.11 Total: -4.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.42 -7.09 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054537843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.412 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds