Wall clock time and date at job start Tue Mar 31 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53122 * 109.52321 * 2 1 4 4 C 1.53032 * 109.28031 * 177.62265 * 3 2 1 5 5 N 1.46850 * 109.52107 * 300.82217 * 4 3 2 6 6 C 1.38544 * 110.99763 * 185.83875 * 5 4 3 7 7 N 1.31247 * 126.40417 * 300.21701 * 6 5 4 8 8 N 1.28512 * 110.05606 * 180.25476 * 7 6 5 9 9 C 1.31216 * 109.99046 * 359.74345 * 8 7 6 10 10 S 1.76193 * 126.44954 * 180.02562 * 9 8 7 11 11 C 1.76195 * 100.00147 * 359.97273 * 10 9 8 12 12 H 1.08008 * 119.99977 * 0.02562 * 11 10 9 13 13 C 1.38534 * 120.00438 * 180.02562 * 11 10 9 14 14 N 1.31726 * 119.99766 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00231 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47336 * 90.00140 * 15 13 11 17 17 H 1.48501 * 109.46964 * 209.99844 * 15 13 11 18 18 H 1.48494 * 109.47165 * 329.99570 * 15 13 11 19 19 N 1.36798 * 126.40161 * 120.03529 * 6 5 4 20 20 C 1.46508 * 127.17105 * 0.02562 * 19 6 5 21 21 C 1.53002 * 109.47065 * 274.75659 * 20 19 6 22 22 H 1.09001 * 109.87135 * 53.99349 * 21 20 19 23 23 C 1.54095 * 109.87417 * 175.00241 * 21 20 19 24 24 C 1.54809 * 104.18753 * 121.45489 * 23 21 20 25 25 C 1.54991 * 102.09463 * 20.87605 * 24 23 21 26 26 O 1.43745 * 109.87717 * 292.82883 * 21 20 19 27 27 C 1.46840 * 111.20080 * 61.74005 * 5 4 3 28 28 C 1.53034 * 109.52327 * 298.25890 * 27 5 4 29 29 H 1.09000 * 109.47024 * 60.00170 * 1 2 3 30 30 H 1.09006 * 109.46995 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47263 * 300.00163 * 1 2 3 32 32 H 1.09005 * 109.52526 * 239.87055 * 2 1 3 33 33 H 1.08997 * 109.50588 * 57.67753 * 3 2 1 34 34 H 1.09007 * 109.49920 * 297.56013 * 3 2 1 35 35 H 1.08994 * 109.46642 * 180.80016 * 4 3 2 36 36 H 1.09000 * 109.46290 * 60.83392 * 4 3 2 37 37 H 0.97002 * 120.00032 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.46711 * 154.75240 * 20 19 6 39 39 H 1.09001 * 109.46730 * 34.75639 * 20 19 6 40 40 H 1.08999 * 110.48414 * 240.12627 * 23 21 20 41 41 H 1.08995 * 110.49089 * 2.77196 * 23 21 20 42 42 H 1.08997 * 110.91104 * 139.07711 * 24 23 21 43 43 H 1.09007 * 110.90472 * 262.63987 * 24 23 21 44 44 H 1.09000 * 110.62123 * 81.48068 * 25 24 23 45 45 H 1.08997 * 110.61919 * 204.32156 * 25 24 23 46 46 H 1.09000 * 109.46481 * 58.27962 * 27 5 4 47 47 H 1.09004 * 109.46501 * 178.24230 * 27 5 4 48 48 H 1.09003 * 109.50389 * 299.23601 * 28 27 5 49 49 H 1.09004 * 109.53366 * 179.13926 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4371 0.0599 5 7 4.0115 0.7425 1.2764 6 6 5.3856 0.8320 1.4290 7 7 6.2929 0.3938 0.5880 8 7 7.4698 0.6360 1.0437 9 6 7.3855 1.2485 2.2011 10 16 8.7325 1.7812 3.2041 11 6 10.0849 1.2535 2.2057 12 1 9.8999 0.7556 1.2652 13 6 11.3856 1.4772 2.6267 14 7 11.6113 2.0850 3.7734 15 14 12.8194 0.9171 1.5685 16 1 13.1989 2.0058 0.6325 17 1 13.9769 0.5862 2.4380 18 1 12.4225 -0.2859 0.7937 19 7 6.0503 1.3967 2.4829 20 6 5.4601 2.0233 3.6685 21 6 5.1370 3.4875 3.3640 22 1 4.5152 3.5517 2.4710 23 6 4.4022 4.1216 4.5609 24 6 5.3038 5.3107 4.9729 25 6 6.1265 5.5567 3.6826 26 8 6.3545 4.2265 3.1698 27 6 3.5721 -0.6586 1.2766 28 6 2.0430 -0.7150 1.2530 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8943 -0.5157 -0.8886 33 1 1.6456 1.9698 0.8682 34 1 1.7152 1.9450 -0.9109 35 1 3.9378 2.4633 0.0744 36 1 3.9666 0.9224 -0.8156 37 1 12.5221 2.2413 4.0685 38 1 6.1670 1.9717 4.4966 39 1 4.5443 1.4978 3.9392 40 1 3.4169 4.4767 4.2589 41 1 4.3168 3.4062 5.3787 42 1 4.7036 6.1852 5.2241 43 1 5.9543 5.0361 5.8033 44 1 5.5541 6.1501 2.9696 45 1 7.0711 6.0472 3.9174 46 1 3.9679 -1.1635 0.3954 47 1 3.9400 -1.1545 2.1749 48 1 1.6469 -0.2224 2.1410 49 1 1.7168 -1.7550 1.2377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054809856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:27 Heat of formation + Delta-G solvation = 24.217839 kcal Electronic energy + Delta-G solvation = -30222.491694 eV Core-core repulsion = 26311.565987 eV Total energy + Delta-G solvation = -3910.925707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.95490 -39.31073 -39.05569 -34.78242 -34.37291 -32.54482 -32.07441 -30.99860 -29.97278 -29.51062 -27.33450 -25.64082 -25.51612 -23.26960 -22.82675 -22.23345 -21.76545 -21.06969 -20.42893 -19.54967 -18.00817 -17.21881 -16.38865 -16.08080 -15.53587 -15.49092 -15.06705 -14.99365 -14.82923 -14.67015 -14.46839 -14.08851 -13.98465 -13.61166 -13.28005 -12.90604 -12.71335 -12.52529 -12.36047 -12.20531 -12.01562 -11.79042 -11.63690 -11.29628 -11.22810 -11.07982 -11.07456 -11.01657 -10.87597 -10.79781 -10.58033 -10.45487 -10.43851 -10.12386 -9.97739 -9.76218 -9.49420 -9.23674 -8.78311 -8.66759 -8.44085 -6.58201 -6.36227 -4.07249 2.38763 2.53103 3.24452 3.25687 3.30643 3.41282 3.66695 3.88497 4.05759 4.11436 4.50845 4.59360 4.61382 4.64242 4.71437 4.85613 5.00417 5.05826 5.07905 5.13473 5.20296 5.25834 5.29826 5.30929 5.40906 5.44679 5.46823 5.48204 5.55488 5.56258 5.63143 5.72687 5.74726 5.80833 5.87677 5.88413 5.89724 5.93743 5.97684 6.01518 6.03990 6.09096 6.28914 6.34524 6.74081 6.90444 7.01590 7.08356 7.67150 7.82024 8.47813 9.15971 9.57164 10.71861 Molecular weight = 352.17amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003650 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.072183 B = 7669.987256 C = 9726.160454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.109 4.109 4 C 0.069 3.931 5 N -0.455 5.455 6 C 0.298 3.702 7 N -0.306 5.306 8 N -0.308 5.308 9 C 0.187 3.813 10 S 0.152 5.848 11 C -0.531 4.531 12 H 0.102 0.898 13 C 0.075 3.925 14 N -0.880 5.880 15 Si 0.929 3.071 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.267 1.267 19 N -0.460 5.460 20 C 0.123 3.877 21 C 0.065 3.935 22 H 0.071 0.929 23 C -0.146 4.146 24 C -0.154 4.154 25 C 0.045 3.955 26 O -0.347 6.347 27 C 0.067 3.933 28 C -0.108 4.108 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.272 0.728 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.095 0.905 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.089 3.075 1.489 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.147 4.147 4 C -0.059 4.059 5 N -0.181 5.181 6 C -0.061 4.061 7 N -0.151 5.151 8 N -0.154 5.154 9 C -0.184 4.184 10 S 0.384 5.616 11 C -0.680 4.680 12 H 0.120 0.880 13 C -0.134 4.134 14 N -0.516 5.516 15 Si 0.755 3.245 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.191 1.191 19 N -0.158 5.158 20 C -0.001 4.001 21 C 0.005 3.995 22 H 0.089 0.911 23 C -0.184 4.184 24 C -0.192 4.192 25 C -0.032 4.032 26 O -0.266 6.266 27 C -0.061 4.061 28 C -0.146 4.146 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.299 3.195 1.760 21.610 hybrid contribution 0.383 -0.513 -1.143 1.310 sum -20.917 2.683 0.617 21.097 Atomic orbital electron populations 1.21798 0.95089 1.01575 1.01699 1.21210 0.95516 0.96263 0.98489 1.21669 0.94167 0.96574 1.02249 1.22076 0.95173 0.98769 0.89867 1.58421 1.04624 1.15713 1.39350 1.22003 0.90484 1.04486 0.89143 1.74260 0.96338 1.20152 1.24315 1.74612 1.13554 1.19156 1.08112 1.28264 0.88400 1.01936 0.99786 1.83479 0.88930 1.68223 1.20969 1.23218 0.90535 1.44316 1.09953 0.87972 1.25011 0.98522 0.94272 0.95552 1.69996 1.22063 1.39738 1.19797 0.85976 0.79564 0.79489 0.79504 1.20037 1.20789 1.19109 1.45974 1.05505 1.46225 1.18106 1.21931 1.00044 0.91670 0.86466 1.23085 0.87242 0.91432 0.97706 0.91139 1.22904 0.99300 0.98131 0.98059 1.23138 0.98636 0.98111 0.99296 1.23534 1.00465 0.86007 0.93196 1.89189 1.32416 1.22404 1.82552 1.22105 0.95283 0.86721 1.01977 1.21662 0.94130 1.00475 0.98368 0.92789 0.92788 0.92654 0.91219 0.91108 0.91249 0.90911 0.93189 0.91859 0.88201 0.88054 0.90495 0.90171 0.90471 0.90095 0.92768 0.88663 0.93258 0.90854 0.91081 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.20 37.16 0.34 -0.66 16 2 C -0.10 -0.84 2.79 -90.50 -0.25 -1.09 16 3 C -0.11 -1.03 5.38 -26.65 -0.14 -1.17 16 4 C 0.07 0.90 5.36 -3.84 -0.02 0.88 16 5 N -0.46 -6.66 4.67 -174.46 -0.81 -7.47 16 6 C 0.30 5.76 6.43 -318.41 -2.05 3.71 16 7 N -0.31 -7.12 12.17 30.38 0.37 -6.75 16 8 N -0.31 -8.09 11.02 30.81 0.34 -7.75 16 9 C 0.19 4.56 8.07 -87.71 -0.71 3.85 16 10 S 0.15 3.93 21.30 -107.50 -2.29 1.64 16 11 C -0.53 -15.41 9.36 30.84 0.29 -15.12 16 12 H 0.10 3.08 6.92 -52.48 -0.36 2.71 16 13 C 0.07 2.10 5.49 -17.49 -0.10 2.01 16 14 N -0.88 -25.15 13.22 55.48 0.73 -24.42 16 15 Si 0.93 21.96 29.55 -169.99 -5.02 16.93 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 19 N -0.46 -9.10 2.81 -117.24 -0.33 -9.43 16 20 C 0.12 1.87 5.54 -4.04 -0.02 1.84 16 21 C 0.06 0.89 3.67 -26.16 -0.10 0.80 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 23 C -0.15 -1.42 6.64 -25.21 -0.17 -1.58 16 24 C -0.15 -1.51 7.15 -24.73 -0.18 -1.69 16 25 C 0.04 0.56 7.72 38.21 0.29 0.86 16 26 O -0.35 -5.92 11.17 -35.23 -0.39 -6.31 16 27 C 0.07 0.86 5.39 -3.84 -0.02 0.84 16 28 C -0.11 -1.01 5.38 -26.65 -0.14 -1.16 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.24 8.32 -40.82 -0.34 6.90 16 38 H 0.10 1.57 7.73 -51.93 -0.40 1.16 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.69 7.70 -51.93 -0.40 0.29 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -33.74 406.09 -12.58 -46.32 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.33 Total: -1.21 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.97 Total: -7.68 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.30 Total: -55.82 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.39 Total: -6.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.29 Total: 1.64 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.74 -12.58 -46.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054809856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.541 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds