Wall clock time and date at job start Tue Mar 31 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86800 * 120.00193 * 2 1 4 4 H 1.48497 * 109.47296 * 240.00016 * 3 2 1 5 5 H 1.48504 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46913 * 120.00142 * 3 2 1 7 7 C 1.40160 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.41693 * 119.99828 * 359.97438 * 7 2 1 10 10 O 1.21769 * 120.00454 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00108 * 180.02562 * 9 7 2 12 12 C 1.38265 * 120.00304 * 175.16418 * 11 9 7 13 13 C 1.46799 * 127.17398 * 330.41699 * 12 11 9 14 14 C 1.39556 * 133.95372 * 0.02562 * 13 12 11 15 15 C 1.36715 * 119.74046 * 179.97438 * 14 13 12 16 16 C 1.38754 * 120.37869 * 359.97438 * 15 14 13 17 17 C 1.37859 * 120.72492 * 0.02562 * 16 15 14 18 18 C 1.39057 * 119.88894 * 0.02562 * 17 16 15 19 19 O 1.34820 * 132.79357 * 180.02562 * 18 17 16 20 20 C 1.35058 * 111.15902 * 179.97438 * 19 18 17 21 21 C 1.41799 * 125.39903 * 179.97438 * 20 19 18 22 22 O 1.21800 * 120.00219 * 186.26893 * 21 20 19 23 23 C 1.47808 * 119.99892 * 6.26295 * 21 20 19 24 24 C 1.39679 * 120.11895 * 6.46232 * 23 21 20 25 25 C 1.37834 * 119.87750 * 179.78876 * 24 23 21 26 26 C 1.38674 * 120.11730 * 0.48488 * 25 24 23 27 27 F 1.35099 * 119.87465 * 179.72143 * 26 25 24 28 28 C 1.38668 * 120.24336 * 359.75085 * 26 25 24 29 29 C 1.37833 * 120.11919 * 0.02562 * 28 26 25 30 30 H 0.96999 * 119.99779 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99721 * 355.16534 * 11 9 7 32 32 H 1.08003 * 120.12840 * 359.94011 * 14 13 12 33 33 H 1.08005 * 119.80631 * 180.02562 * 15 14 13 34 34 H 1.08003 * 119.63987 * 179.74213 * 16 15 14 35 35 H 1.07999 * 120.05479 * 179.97438 * 17 16 15 36 36 H 1.08001 * 120.05915 * 0.02562 * 24 23 21 37 37 H 1.07999 * 119.93870 * 180.23319 * 25 24 23 38 38 H 1.07997 * 119.94138 * 179.97438 * 28 26 25 39 39 H 1.08005 * 120.05697 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0070 -1.2138 -0.0005 8 1 3.0870 -1.2139 -0.0001 9 6 1.2985 -2.4409 -0.0005 10 8 0.0808 -2.4409 -0.0005 11 7 1.9723 -3.6082 -0.0005 12 6 1.2847 -4.8034 0.1004 13 6 0.0063 -5.0364 0.7834 14 6 -0.8737 -4.2209 1.4962 15 6 -2.0159 -4.7549 2.0248 16 6 -2.3043 -6.1016 1.8561 17 6 -1.4472 -6.9230 1.1552 18 6 -0.2792 -6.4017 0.6096 19 8 0.7217 -6.9513 -0.1072 20 6 1.6594 -6.0312 -0.4203 21 6 2.8395 -6.2817 -1.1655 22 8 3.6757 -5.4056 -1.2948 23 6 3.0549 -7.6061 -1.7854 24 6 2.0421 -8.5675 -1.7545 25 6 2.2467 -9.7994 -2.3379 26 6 3.4590 -10.0887 -2.9459 27 9 3.6563 -11.2997 -3.5112 28 6 4.4697 -9.1397 -2.9751 29 6 4.2741 -7.9030 -2.3988 30 1 -0.4850 0.8401 0.0004 31 1 2.9397 -3.6097 -0.0713 32 1 -0.6531 -3.1721 1.6301 33 1 -2.6979 -4.1247 2.5763 34 1 -3.2078 -6.5119 2.2823 35 1 -1.6822 -7.9698 1.0307 36 1 1.0990 -8.3446 -1.2777 37 1 1.4629 -10.5422 -2.3179 38 1 5.4121 -9.3703 -3.4495 39 1 5.0621 -7.1647 -2.4218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057354863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:17 Heat of formation + Delta-G solvation = -54.397989 kcal Electronic energy + Delta-G solvation = -29879.620294 eV Core-core repulsion = 25440.536784 eV Total energy + Delta-G solvation = -4439.083509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.090 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.12396 -42.02774 -39.63552 -38.27523 -37.81685 -37.27008 -34.18689 -32.70016 -31.58610 -31.13618 -31.00634 -29.79531 -28.91989 -26.91902 -24.92907 -23.29631 -22.56349 -22.33164 -21.75949 -20.07935 -19.42344 -18.21900 -17.81701 -17.32568 -17.01501 -16.45062 -16.00940 -15.90891 -15.77758 -15.44849 -15.29084 -14.60104 -14.41553 -14.21009 -14.02377 -13.95423 -13.77636 -13.59999 -13.26843 -13.15318 -12.85240 -12.58330 -12.23453 -12.17054 -11.84227 -11.59490 -11.52503 -11.23164 -11.10775 -10.86388 -10.70592 -10.50316 -10.12618 -9.75662 -9.29596 -9.14246 -8.88474 -8.54930 -8.29208 -7.97618 -7.18467 -6.59059 -5.11271 0.35215 1.06932 1.10671 1.77360 2.15614 2.97037 2.99311 3.04269 3.06246 3.08643 3.76538 3.82928 4.02844 4.06591 4.13696 4.23926 4.33229 4.59760 4.69449 4.95469 5.11667 5.13137 5.18739 5.28564 5.36261 5.51773 5.63016 5.71143 5.73648 5.76372 5.87722 5.94213 6.04410 6.16858 6.32868 6.44234 6.57936 6.68625 6.82862 6.94848 7.05044 7.09471 7.40263 7.54912 7.73746 7.84886 7.89370 8.59206 8.95457 10.12934 10.31443 Molecular weight = 353.09amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.003271 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.073153 B = 8558.405502 C =10895.927706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.530 3.470 10 O -0.555 6.555 11 N -0.643 5.643 12 C 0.256 3.744 13 C -0.153 4.153 14 C 0.003 3.997 15 C -0.174 4.174 16 C -0.068 4.068 17 C -0.147 4.147 18 C 0.095 3.905 19 O -0.186 6.186 20 C -0.189 4.189 21 C 0.474 3.526 22 O -0.467 6.467 23 C -0.159 4.159 24 C -0.042 4.042 25 C -0.168 4.168 26 C 0.119 3.881 27 F -0.139 7.139 28 C -0.170 4.170 29 C -0.036 4.036 30 H 0.277 0.723 31 H 0.410 0.590 32 H 0.158 0.842 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 -14.441 0.244 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.558 4.558 8 H 0.093 0.907 9 C 0.341 3.659 10 O -0.439 6.439 11 N -0.286 5.286 12 C 0.145 3.855 13 C -0.156 4.156 14 C -0.015 4.015 15 C -0.192 4.192 16 C -0.086 4.086 17 C -0.166 4.166 18 C 0.046 3.954 19 O -0.090 6.090 20 C -0.241 4.241 21 C 0.360 3.640 22 O -0.349 6.349 23 C -0.160 4.160 24 C -0.059 4.059 25 C -0.187 4.187 26 C 0.099 3.901 27 F -0.118 7.118 28 C -0.189 4.189 29 C -0.054 4.054 30 H 0.088 0.912 31 H 0.248 0.752 32 H 0.175 0.825 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.175 0.825 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.071 -14.041 0.070 14.082 hybrid contribution 0.849 0.528 -0.265 1.034 sum 1.920 -13.514 -0.195 13.651 Atomic orbital electron populations 1.69964 1.07331 1.28527 1.30838 1.25785 0.94765 1.00863 0.92338 0.86242 0.79862 0.79808 0.79977 1.18819 1.20178 1.18840 1.20051 0.94754 0.89589 1.51372 0.90673 1.17227 0.87832 0.81690 0.79114 1.90634 1.13183 1.85556 1.54488 1.44071 1.10945 1.03263 1.70354 1.19427 0.90731 0.86991 0.88337 1.19544 0.97296 0.93642 1.05080 1.21283 0.90343 1.01054 0.88819 1.20831 0.98767 0.95218 1.04389 1.20972 0.97891 0.93598 0.96157 1.19768 0.92461 1.00473 1.03902 1.19735 0.90221 0.91355 0.94097 1.83942 1.27833 1.35550 1.61646 1.20402 0.97842 0.88782 1.17043 1.17383 0.82593 0.86542 0.77461 1.90674 1.42503 1.46015 1.55679 1.20527 0.95655 0.96413 1.03392 1.21753 0.99556 0.90884 0.93735 1.21132 0.96738 0.98931 1.01864 1.18021 0.95160 0.80947 0.95954 1.91502 1.95531 1.42127 1.82602 1.21082 0.99615 0.93792 1.04382 1.21227 0.96483 0.95465 0.92204 0.91212 0.75184 0.82464 0.85678 0.85324 0.85405 0.82547 0.84274 0.84286 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.84 11.73 55.56 0.65 -19.19 16 2 C 0.09 2.19 5.50 -17.34 -0.10 2.10 16 3 Si 0.92 18.47 29.56 -169.99 -5.02 13.44 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.52 -13.62 9.31 -37.54 -0.35 -13.97 16 8 H 0.08 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.53 14.01 7.42 -14.94 -0.11 13.90 16 10 O -0.55 -15.85 10.58 5.13 0.05 -15.79 16 11 N -0.64 -14.77 5.09 -10.85 -0.06 -14.83 16 12 C 0.26 5.53 6.78 -81.40 -0.55 4.98 16 13 C -0.15 -3.16 5.79 -105.07 -0.61 -3.77 16 14 C 0.00 0.06 8.64 -39.64 -0.34 -0.29 16 15 C -0.17 -2.81 9.98 -39.94 -0.40 -3.20 16 16 C -0.07 -0.92 10.01 -39.53 -0.40 -1.32 16 17 C -0.15 -2.11 10.07 -39.42 -0.40 -2.50 16 18 C 0.09 1.67 7.38 -38.40 -0.28 1.39 16 19 O -0.19 -3.19 7.26 2.15 0.02 -3.17 16 20 C -0.19 -3.59 6.76 -38.12 -0.26 -3.85 16 21 C 0.47 8.36 6.92 -34.31 -0.24 8.12 16 22 O -0.47 -8.97 15.19 5.10 0.08 -8.89 16 23 C -0.16 -2.30 5.87 -104.91 -0.62 -2.92 16 24 C -0.04 -0.54 9.28 -39.19 -0.36 -0.90 16 25 C -0.17 -1.87 10.01 -39.57 -0.40 -2.26 16 26 C 0.12 1.34 7.31 -39.26 -0.29 1.05 16 27 F -0.14 -1.57 17.26 2.25 0.04 -1.53 16 28 C -0.17 -1.84 10.01 -39.57 -0.40 -2.23 16 29 C -0.04 -0.44 9.59 -39.19 -0.38 -0.82 16 30 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16 31 H 0.41 8.75 7.27 -40.82 -0.30 8.46 16 32 H 0.16 3.70 5.81 -52.48 -0.30 3.40 16 33 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.16 2.05 4.94 -52.49 -0.26 1.79 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.14 1.68 7.66 -52.48 -0.40 1.27 16 LS Contribution 346.72 15.07 5.23 5.23 Total: -1.00 -30.12 346.72 -8.40 -38.52 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -2.92 Total: 12.73 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -6.46 Total: -6.50 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.60 Total: -34.02 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.15 Total: -27.86 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.12 -8.40 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057354863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.876 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds