Wall clock time and date at job start Tue Mar 31 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46845 * 2 1 4 4 C 1.50697 * 109.47186 * 240.00017 * 2 1 3 5 5 C 1.39379 * 119.50260 * 354.51667 * 4 2 1 6 6 C 1.36098 * 120.98434 * 179.72942 * 5 4 2 7 7 C 1.40533 * 119.65298 * 0.56288 * 6 5 4 8 8 C 1.40549 * 121.28008 * 179.72176 * 7 6 5 9 9 C 1.36087 * 119.65256 * 180.02562 * 8 7 6 10 10 C 1.39378 * 120.98613 * 359.95813 * 9 8 7 11 11 C 1.36092 * 120.99340 * 0.02562 * 10 9 8 12 12 C 1.40534 * 119.65568 * 359.97438 * 11 10 9 13 13 C 1.36087 * 119.50835 * 174.78840 * 4 2 1 14 14 N 1.46905 * 109.47045 * 119.99928 * 2 1 3 15 15 C 1.46897 * 110.99666 * 287.60162 * 14 2 1 16 16 C 1.50700 * 109.46774 * 197.44600 * 15 14 2 17 17 O 1.21284 * 120.00074 * 6.16332 * 16 15 14 18 18 N 1.34777 * 119.99753 * 186.16533 * 16 15 14 19 19 C 1.46504 * 119.99616 * 179.97438 * 18 16 15 20 20 C 1.50710 * 109.46843 * 179.97438 * 19 18 16 21 21 H 1.07992 * 119.99697 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99562 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00300 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99702 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47370 * 89.99635 * 24 22 20 26 26 H 1.48500 * 109.47127 * 209.99657 * 24 22 20 27 27 H 1.48501 * 109.47276 * 329.99639 * 24 22 20 28 28 C 1.46902 * 110.99897 * 51.55832 * 14 2 1 29 29 C 1.52995 * 117.49822 * 138.14677 * 28 14 2 30 30 C 1.52997 * 117.49938 * 69.52189 * 28 14 2 31 31 H 1.09000 * 109.47167 * 300.00190 * 1 2 3 32 32 H 1.08996 * 109.47031 * 59.99894 * 1 2 3 33 33 H 1.09001 * 109.46845 * 180.02562 * 1 2 3 34 34 H 1.08002 * 119.50653 * 359.97438 * 5 4 2 35 35 H 1.07999 * 120.16978 * 180.23521 * 6 5 4 36 36 H 1.07994 * 120.17023 * 0.02996 * 8 7 6 37 37 H 1.08000 * 119.50888 * 179.97438 * 9 8 7 38 38 H 1.08007 * 119.50121 * 180.02562 * 10 9 8 39 39 H 1.07997 * 120.17242 * 180.02562 * 11 10 9 40 40 H 1.08007 * 120.17187 * 359.95560 * 13 4 2 41 41 H 1.08993 * 109.47885 * 317.44670 * 15 14 2 42 42 H 1.08999 * 109.46856 * 77.45124 * 15 14 2 43 43 H 0.96996 * 120.00742 * 0.02562 * 18 16 15 44 44 H 1.09001 * 109.47174 * 299.99804 * 19 18 16 45 45 H 1.09000 * 109.47227 * 60.00593 * 19 18 16 46 46 H 0.97001 * 119.99938 * 180.02562 * 23 22 20 47 47 H 1.08999 * 115.55083 * 283.85215 * 28 14 2 48 48 H 1.09011 * 117.49724 * 359.97438 * 29 28 14 49 49 H 1.08996 * 117.50081 * 145.02019 * 29 28 14 50 50 H 1.08995 * 117.50323 * 214.97998 * 30 28 14 51 51 H 1.09004 * 117.49941 * 359.97438 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.1228 -1.3356 -2.0815 6 6 1.5427 -1.9810 -3.2037 7 6 2.9144 -2.0297 -3.5056 8 6 3.3863 -2.6918 -4.6521 9 6 4.7218 -2.7189 -4.9121 10 6 5.6319 -2.0983 -4.0581 11 6 5.2115 -1.4477 -2.9392 12 6 3.8398 -1.3984 -2.6374 13 6 3.3678 -0.7366 -1.4910 14 7 2.0197 -0.6925 1.1995 15 6 1.8042 0.1224 2.4026 16 6 2.6736 -0.3928 3.5205 17 8 3.4816 -1.2712 3.3048 18 7 2.5531 0.1225 4.7600 19 6 3.3979 -0.3787 5.8469 20 6 3.0684 0.3579 7.1198 21 1 2.3057 1.1225 7.1192 22 6 3.7406 0.0555 8.2850 23 7 4.6691 -0.8759 8.2857 24 14 3.3317 0.9680 9.8628 25 1 2.2565 0.2450 10.5883 26 1 4.5426 1.0432 10.7191 27 1 2.8709 2.3412 9.5353 28 6 1.3913 -2.0130 1.3384 29 6 2.2847 -3.1790 1.7664 30 6 1.7804 -3.0907 0.3245 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.0685 -1.3040 -1.8490 35 1 0.8261 -2.4578 -3.8559 36 1 2.6926 -3.1763 -5.3231 37 1 5.0819 -3.2286 -5.7935 38 1 6.6866 -2.1343 -4.2879 39 1 5.9282 -0.9711 -2.2869 40 1 4.0614 -0.2509 -0.8205 41 1 2.0625 1.1597 2.1900 42 1 0.7571 0.0621 2.6993 43 1 1.9066 0.8247 4.9327 44 1 3.2166 -1.4445 5.9861 45 1 4.4464 -0.2181 5.5958 46 1 5.1418 -1.0889 9.1056 47 1 0.3624 -2.0085 1.6981 48 1 3.3389 -2.9663 1.9445 49 1 1.8436 -3.9418 2.4079 50 1 1.0077 -3.7955 0.0175 51 1 2.5025 -2.8198 -0.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:17 Heat of formation + Delta-G solvation = 45.411571 kcal Electronic energy + Delta-G solvation = -30882.225376 eV Core-core repulsion = 26940.315090 eV Total energy + Delta-G solvation = -3941.910286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 352.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.79738 -39.41604 -38.04782 -36.34114 -34.61188 -34.04937 -32.82371 -32.27825 -31.56291 -29.53589 -28.90438 -27.70352 -25.80545 -24.11525 -23.39306 -22.49196 -22.03439 -21.98543 -21.75486 -19.91124 -19.23652 -17.49116 -17.29292 -16.77799 -16.39694 -15.93521 -15.69884 -15.24345 -15.10460 -14.82613 -14.73306 -14.50747 -14.04579 -13.91683 -13.73461 -13.59571 -13.43822 -12.91266 -12.79215 -12.64747 -12.46962 -12.26935 -12.21624 -11.92346 -11.79919 -11.55798 -11.36149 -11.19279 -11.00987 -10.98626 -10.89489 -10.83427 -10.72112 -10.29653 -10.08403 -9.97699 -9.82592 -9.36746 -8.93455 -8.70101 -8.60253 -8.16536 -7.94118 -7.78075 -6.14900 -4.21493 0.45330 0.89414 1.97897 2.83794 3.24503 3.30667 3.32960 3.50438 3.64768 4.05532 4.10835 4.27026 4.41635 4.49522 4.55478 4.71701 4.77864 4.88624 5.01660 5.04547 5.13604 5.19297 5.21051 5.22506 5.25768 5.31544 5.32851 5.37297 5.40772 5.49488 5.65307 5.66726 5.67652 5.71626 5.81334 5.85519 5.93883 6.00102 6.02724 6.13022 6.14850 6.34427 6.40132 6.45838 6.58809 6.74448 6.75131 6.89495 7.01546 7.23224 7.37426 7.53721 7.56821 7.72108 8.00467 8.70712 8.84069 9.23185 9.45933 10.95231 Molecular weight = 352.19amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.002144 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.556770 B =13058.448666 C =13730.426755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.120 3.880 3 H 0.092 0.908 4 C -0.061 4.061 5 C -0.102 4.102 6 C -0.116 4.116 7 C -0.052 4.052 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.100 4.100 12 C -0.051 4.051 13 C -0.080 4.080 14 N -0.480 5.480 15 C 0.038 3.962 16 C 0.499 3.501 17 O -0.529 6.529 18 N -0.719 5.719 19 C 0.254 3.746 20 C -0.542 4.542 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.007 3.993 29 C -0.143 4.143 30 C -0.176 4.176 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.387 0.613 44 H 0.024 0.976 45 H 0.025 0.975 46 H 0.265 0.735 47 H 0.079 0.921 48 H 0.119 0.881 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 -0.329 -26.365 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.013 3.987 3 H 0.110 0.890 4 C -0.062 4.062 5 C -0.120 4.120 6 C -0.134 4.134 7 C -0.052 4.052 8 C -0.128 4.128 9 C -0.137 4.137 10 C -0.142 4.142 11 C -0.117 4.117 12 C -0.051 4.051 13 C -0.098 4.098 14 N -0.203 5.203 15 C -0.093 4.093 16 C 0.283 3.717 17 O -0.406 6.406 18 N -0.369 5.369 19 C 0.133 3.867 20 C -0.581 4.581 21 H 0.080 0.920 22 C -0.141 4.141 23 N -0.523 5.523 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.101 4.101 29 C -0.180 4.180 30 C -0.213 4.213 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.219 0.781 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.137 0.863 49 H 0.101 0.899 50 H 0.101 0.899 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.336 -1.136 -26.410 27.183 hybrid contribution -1.410 0.909 1.207 2.067 sum -7.747 -0.227 -25.202 26.367 Atomic orbital electron populations 1.22561 0.96972 1.02655 1.02285 1.20646 0.92869 0.97123 0.88100 0.89023 1.19323 0.93387 0.98222 0.95262 1.20871 0.99872 0.97055 0.94209 1.20921 0.94192 1.00404 0.97841 1.18085 0.93442 0.98449 0.95214 1.20994 0.95909 0.99364 0.96539 1.20817 0.93432 0.99848 0.99648 1.20829 0.99702 0.98491 0.95157 1.21100 0.94547 0.98895 0.97206 1.18109 0.93330 0.98525 0.95177 1.20907 0.95532 0.98213 0.95170 1.61594 1.56842 1.01414 1.00455 1.22017 0.98613 0.97989 0.90686 1.20227 0.84628 0.83390 0.83497 1.90609 1.36820 1.30376 1.82788 1.46439 1.41057 1.40037 1.09357 1.19027 0.89995 0.95036 0.82624 1.21242 1.21777 1.21451 0.93589 0.92009 1.24952 0.94751 0.95175 0.99188 1.69977 1.23562 1.30512 1.28224 0.86435 0.77921 0.79957 0.82705 1.20513 1.21020 1.19784 1.22166 0.95749 0.86020 1.06175 1.23100 1.02190 0.97574 0.95181 1.23165 1.03691 1.00242 0.94198 0.92262 0.91846 0.91545 0.85796 0.85945 0.85942 0.86311 0.86183 0.85518 0.85112 0.88543 0.92407 0.78079 0.95755 0.95703 0.92496 0.90321 0.86320 0.89882 0.89895 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 7.24 37.16 0.27 -1.35 16 2 C 0.12 1.27 2.54 -68.86 -0.18 1.10 16 3 H 0.09 0.91 7.79 -51.93 -0.40 0.51 16 4 C -0.06 -0.66 3.13 -104.97 -0.33 -0.99 16 5 C -0.10 -0.97 7.61 -39.93 -0.30 -1.28 16 6 C -0.12 -1.09 9.77 -39.49 -0.39 -1.47 16 7 C -0.05 -0.55 5.74 -106.83 -0.61 -1.16 16 8 C -0.11 -1.01 9.77 -39.48 -0.39 -1.39 16 9 C -0.12 -1.04 9.95 -39.93 -0.40 -1.43 16 10 C -0.12 -1.14 9.95 -39.93 -0.40 -1.54 16 11 C -0.10 -1.05 9.77 -39.49 -0.39 -1.43 16 12 C -0.05 -0.59 5.74 -106.84 -0.61 -1.21 16 13 C -0.08 -0.94 8.42 -39.49 -0.33 -1.27 16 14 N -0.48 -6.46 4.07 -221.53 -0.90 -7.36 16 15 C 0.04 0.53 4.93 -4.98 -0.02 0.50 16 16 C 0.50 9.66 7.60 -10.99 -0.08 9.58 16 17 O -0.53 -12.19 13.27 5.55 0.07 -12.11 16 18 N -0.72 -14.90 5.55 -61.46 -0.34 -15.24 16 19 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 20 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 21 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 24 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.01 0.10 3.19 -67.72 -0.22 -0.12 16 29 C -0.14 -2.26 9.14 -26.73 -0.24 -2.50 16 30 C -0.18 -2.29 8.48 -26.73 -0.23 -2.51 16 31 H 0.06 0.50 7.20 -51.93 -0.37 0.13 16 32 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 33 H 0.07 0.60 5.78 -51.93 -0.30 0.30 16 34 H 0.12 1.00 5.82 -52.49 -0.31 0.70 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.10 1.14 7.74 -51.93 -0.40 0.74 16 42 H 0.06 0.71 7.37 -51.93 -0.38 0.33 16 43 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 44 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.08 1.04 7.46 -51.93 -0.39 0.65 16 48 H 0.12 2.26 6.56 -51.92 -0.34 1.92 16 49 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.10 1.42 5.42 -51.93 -0.28 1.14 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -32.13 404.19 -12.33 -44.47 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.68 Total: 8.89 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -5.29 Total: -15.17 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.51 Total: -48.03 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.07 Total: -12.11 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.13 -12.33 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.880 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds