Wall clock time and date at job start Tue Mar 31 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47054 * 2 1 4 4 C 1.37473 * 123.35060 * 265.02920 * 3 2 1 5 5 C 1.33820 * 115.10345 * 179.97438 * 4 3 2 6 6 S 1.70625 * 110.95235 * 359.71921 * 5 4 3 7 7 C 1.36654 * 123.35279 * 85.00142 * 3 2 1 8 8 C 1.46579 * 125.45486 * 0.02562 * 7 3 2 9 9 O 1.21697 * 120.00118 * 7.10910 * 8 7 3 10 10 N 1.34774 * 119.99824 * 187.11384 * 8 7 3 11 11 C 1.46500 * 119.99887 * 5.69836 * 10 8 7 12 12 C 1.50694 * 109.47417 * 274.65337 * 11 10 8 13 13 H 1.08004 * 120.00223 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00234 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00047 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00024 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47672 * 89.99804 * 16 14 12 18 18 H 1.48504 * 109.47362 * 209.99858 * 16 14 12 19 19 H 1.48503 * 109.47430 * 329.99656 * 16 14 12 20 20 C 1.46502 * 120.00248 * 185.69900 * 10 8 7 21 21 C 1.52994 * 109.47043 * 270.00179 * 20 10 8 22 22 N 1.46905 * 109.46723 * 179.97438 * 21 20 10 23 23 C 1.47015 * 111.00044 * 293.63212 * 22 21 20 24 24 C 1.53095 * 109.25524 * 177.60750 * 23 22 21 25 25 O 1.43014 * 109.25865 * 56.85174 * 24 23 22 26 26 C 1.43015 * 113.73791 * 301.32716 * 25 24 23 27 27 C 1.47014 * 110.99599 * 169.99713 * 22 21 20 28 28 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46909 * 299.99823 * 1 2 3 30 30 H 1.08993 * 109.47436 * 59.99901 * 1 2 3 31 31 H 1.09001 * 109.47246 * 240.00452 * 2 1 3 32 32 H 1.08993 * 109.47436 * 120.00099 * 2 1 3 33 33 H 1.08000 * 122.45368 * 359.94752 * 4 3 2 34 34 H 1.07995 * 124.52810 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47286 * 34.65575 * 11 10 8 36 36 H 1.09002 * 109.47112 * 154.65353 * 11 10 8 37 37 H 0.96991 * 120.00072 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.46680 * 149.99644 * 20 10 8 39 39 H 1.09001 * 109.46379 * 30.00177 * 20 10 8 40 40 H 1.08994 * 109.47356 * 60.00166 * 21 20 10 41 41 H 1.09001 * 109.47531 * 299.99292 * 21 20 10 42 42 H 1.08993 * 109.50552 * 297.54182 * 23 22 21 43 43 H 1.08996 * 109.50316 * 57.67590 * 23 22 21 44 44 H 1.08995 * 109.51066 * 296.91310 * 24 23 22 45 45 H 1.08996 * 109.54005 * 176.80372 * 24 23 22 46 46 H 1.08995 * 109.50545 * 298.73428 * 26 25 24 47 47 H 1.09000 * 109.54173 * 178.62489 * 26 25 24 48 48 H 1.08995 * 109.51016 * 302.32292 * 27 22 21 49 49 H 1.09000 * 109.50942 * 62.41536 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3780 2.1002 -1.1440 5 6 2.8033 3.3546 -0.9528 6 16 2.7845 3.7592 0.7046 7 6 2.1890 2.1623 1.1371 8 6 1.9006 1.7022 2.4986 9 8 1.6097 0.5376 2.6986 10 7 1.9575 2.5691 3.5291 11 6 2.1842 3.9941 3.2758 12 6 3.6644 4.2565 3.1712 13 1 4.3663 3.4432 3.2828 14 6 4.1229 5.5351 2.9343 15 7 3.2684 6.5256 2.7989 16 14 5.9578 5.8602 2.8040 17 1 6.3879 5.7109 1.3905 18 1 6.2501 7.2405 3.2671 19 1 6.6942 4.8876 3.6508 20 6 1.7927 2.0864 4.9024 21 6 0.3114 2.1275 5.2831 22 7 0.1461 1.6429 6.6600 23 6 0.4869 0.2163 6.7609 24 6 0.3587 -0.2314 8.2193 25 8 -0.9664 0.0428 8.6822 26 6 -1.3313 1.4231 8.5987 27 6 -1.2202 1.8877 7.1442 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3117 1.6541 -2.1254 34 1 3.1128 4.0230 -1.7425 35 1 1.6979 4.2792 2.3428 36 1 1.7685 4.5795 4.0959 37 1 3.5909 7.4249 2.6319 38 1 2.3603 2.7225 5.5816 39 1 2.1578 1.0618 4.9736 40 1 -0.2561 1.4915 4.6039 41 1 -0.0538 3.1521 5.2119 42 1 -0.1946 -0.3654 6.1404 43 1 1.5111 0.0619 6.4215 44 1 1.0780 0.3124 8.8316 45 1 0.5551 -1.3011 8.2909 46 1 -0.6612 2.0150 9.2221 47 1 -2.3572 1.5505 8.9442 48 1 -1.4422 2.9531 7.0845 49 1 -1.9291 1.3332 6.5292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058227197.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:11 Heat of formation + Delta-G solvation = -44.155442 kcal Electronic energy + Delta-G solvation = -30205.679178 eV Core-core repulsion = 26259.495832 eV Total energy + Delta-G solvation = -3946.183346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.70722 -39.14201 -37.39287 -35.97754 -34.91893 -32.95499 -32.09932 -31.27871 -30.32406 -28.33848 -27.52838 -26.01398 -24.46006 -24.04968 -23.22439 -22.16537 -21.65351 -20.37823 -19.63780 -17.53218 -17.26363 -16.77634 -16.58354 -16.16227 -15.46691 -15.27698 -15.10211 -14.92653 -14.67826 -14.52590 -14.51856 -13.91039 -13.49545 -13.48321 -13.12535 -13.00457 -12.63602 -12.49935 -12.39896 -12.28049 -12.15037 -11.92476 -11.57840 -11.44611 -11.38380 -11.28028 -11.17814 -10.95444 -10.77719 -10.72543 -10.47073 -10.40297 -10.20222 -10.01971 -9.72205 -9.24005 -9.08164 -8.75252 -8.37781 -8.08179 -7.79351 -7.40756 -6.44573 -4.45327 1.40524 2.64124 3.03218 3.11953 3.16217 3.19025 3.22433 3.54047 3.79902 3.94915 4.13098 4.19599 4.83393 4.90996 4.98079 4.99721 5.10532 5.22788 5.33856 5.43040 5.49720 5.52393 5.56728 5.60822 5.64576 5.74697 5.81637 5.83829 5.89265 5.92491 5.93737 6.03866 6.17304 6.27874 6.28829 6.36883 6.44886 6.50102 6.68628 6.76615 6.88404 6.96460 6.99580 7.07891 7.13983 7.18397 7.39101 7.51618 7.70414 8.17207 8.54808 8.93325 9.12581 10.58761 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.003964 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.795237 B = 7062.665404 C = 9360.716839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 C -0.047 4.047 4 C -0.166 4.166 5 C -0.338 4.338 6 S 0.399 5.601 7 C -0.300 4.300 8 C 0.592 3.408 9 O -0.561 6.561 10 N -0.598 5.598 11 C 0.223 3.777 12 C -0.531 4.531 13 H 0.071 0.929 14 C 0.078 3.922 15 N -0.872 5.872 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.268 1.268 20 C 0.131 3.869 21 C 0.043 3.957 22 N -0.533 5.533 23 C 0.015 3.985 24 C 0.064 3.936 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.272 0.728 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 -6.184 3.161 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 C -0.063 4.063 4 C -0.197 4.197 5 C -0.475 4.475 6 S 0.679 5.321 7 C -0.421 4.421 8 C 0.382 3.618 9 O -0.443 6.443 10 N -0.329 5.329 11 C 0.101 3.899 12 C -0.575 4.575 13 H 0.089 0.911 14 C -0.130 4.130 15 N -0.507 5.507 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.193 1.193 20 C 0.007 3.993 21 C -0.085 4.085 22 N -0.259 5.259 23 C -0.113 4.113 24 C -0.013 4.013 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.104 0.896 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.136 -5.066 4.319 8.408 hybrid contribution 0.378 -0.935 -1.917 2.167 sum -4.758 -6.002 2.401 8.027 Atomic orbital electron populations 1.21573 0.95440 1.00639 1.01369 1.20277 0.95637 0.92056 1.02583 1.19130 0.99569 0.96734 0.90912 1.19488 1.07149 0.94898 0.98214 1.26787 1.08328 1.01862 1.10562 1.86393 1.51285 1.05740 0.88641 1.24525 1.18179 1.02598 0.96805 1.17033 0.76460 0.84872 0.83414 1.90648 1.50972 1.17718 1.85004 1.47988 1.69790 1.10086 1.04993 1.19703 0.97159 0.75244 0.97809 1.21523 0.91829 0.94624 1.49538 0.91094 1.24939 0.98517 0.95573 0.93959 1.69908 1.34504 1.00789 1.45518 0.86576 0.84567 0.78093 0.79168 1.19847 1.20624 1.19269 1.21169 0.94448 1.00674 0.82978 1.22521 0.98496 1.00465 0.87064 1.62154 1.24224 1.16622 1.22855 1.22836 1.02613 0.88535 0.97317 1.22682 0.84233 1.00947 0.93397 1.87954 1.32005 1.25726 1.85117 1.22647 1.00860 0.82561 0.95131 1.22765 0.89692 1.01968 0.96603 0.93255 0.92674 0.93595 0.92538 0.89105 0.86646 0.83836 0.93798 0.93155 0.91852 0.89517 0.90918 0.94294 0.90441 0.93860 0.89083 0.92221 0.88617 0.92214 0.88698 0.89571 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.86 37.16 0.37 -1.70 16 2 C -0.07 -1.13 5.55 -27.88 -0.15 -1.29 16 3 C -0.05 -0.89 5.16 -105.47 -0.54 -1.44 16 4 C -0.17 -2.98 9.96 -41.41 -0.41 -3.40 16 5 C -0.34 -6.18 10.92 29.18 0.32 -5.86 16 6 S 0.40 8.16 15.53 -107.50 -1.67 6.49 16 7 C -0.30 -6.25 6.19 -36.79 -0.23 -6.47 16 8 C 0.59 12.64 7.57 -12.90 -0.10 12.54 16 9 O -0.56 -12.31 13.76 5.19 0.07 -12.24 16 10 N -0.60 -12.16 2.47 -176.64 -0.44 -12.59 16 11 C 0.22 4.88 4.72 -5.20 -0.02 4.86 16 12 C -0.53 -12.36 6.57 -34.44 -0.23 -12.59 16 13 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 14 C 0.08 1.82 4.85 -17.82 -0.09 1.73 16 15 N -0.87 -21.13 13.29 55.43 0.74 -20.40 16 16 Si 0.89 18.80 29.54 -169.99 -5.02 13.78 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C 0.13 2.32 5.28 -4.04 -0.02 2.29 16 21 C 0.04 0.68 5.28 -3.82 -0.02 0.66 16 22 N -0.53 -7.38 4.73 -234.32 -1.11 -8.48 16 23 C 0.02 0.20 5.44 -3.71 -0.02 0.18 16 24 C 0.06 0.73 7.01 37.21 0.26 0.99 16 25 O -0.39 -4.90 10.83 -35.23 -0.38 -5.29 16 26 C 0.07 0.70 7.01 37.21 0.26 0.96 16 27 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.96 7.96 -51.92 -0.41 0.55 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.09 1.71 6.17 -51.93 -0.32 1.39 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.05 1.01 4.96 -26.09 -0.13 0.88 16 36 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16 37 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 38 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 39 H 0.07 1.30 5.88 -51.93 -0.31 0.99 16 40 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.20 6.38 -51.93 -0.33 0.86 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 49 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -25.85 395.67 -10.28 -36.13 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.79 Total: 4.98 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.65 Total: -8.34 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.81 Total: -41.47 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.31 Total: -17.52 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: 8.16 SS G_CDS: -1.67 Total: 6.49 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -25.85 -10.28 -36.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058227197.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.024 kcal (2) G-P(sol) polarization free energy of solvation -25.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds