Wall clock time and date at job start Tue Mar 31 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39729 * 125.78084 * 2 1 4 4 C 1.36143 * 107.86059 * 180.14195 * 3 2 1 5 5 N 1.39387 * 126.26339 * 179.84093 * 4 3 2 6 6 C 1.34777 * 119.99684 * 359.97438 * 5 4 3 7 7 O 1.21563 * 120.00283 * 359.71657 * 6 5 4 8 8 C 1.47819 * 119.99826 * 179.71955 * 6 5 4 9 9 C 1.39636 * 120.11459 * 359.72582 * 8 6 5 10 10 C 1.37965 * 119.98270 * 179.71762 * 9 8 6 11 11 C 1.38269 * 120.21596 * 0.55958 * 10 9 8 12 12 C 1.38908 * 120.23478 * 359.71137 * 11 10 9 13 13 N 1.40280 * 119.99673 * 179.97438 * 12 11 10 14 14 C 1.35065 * 127.38730 * 0.02844 * 13 12 11 15 15 N 1.30743 * 107.27283 * 179.97438 * 14 13 12 16 16 N 1.28418 * 110.64855 * 0.02562 * 15 14 13 17 17 N 1.28957 * 110.20211 * 359.72766 * 16 15 14 18 18 C 1.38575 * 120.00730 * 0.02562 * 12 11 10 19 19 N 1.35805 * 107.47412 * 359.59210 * 4 3 2 20 20 C 1.46496 * 126.09572 * 180.24247 * 19 4 3 21 21 C 1.50703 * 109.47751 * 89.99298 * 20 19 4 22 22 H 1.07997 * 119.99468 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00026 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99455 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47491 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47238 * 120.00360 * 25 23 21 28 28 H 1.48499 * 109.47218 * 240.00021 * 25 23 21 29 29 N 1.30836 * 125.77936 * 179.67448 * 2 1 3 30 30 H 1.09001 * 109.47041 * 270.29809 * 1 2 3 31 31 H 1.08994 * 109.47088 * 30.29867 * 1 2 3 32 32 H 1.09000 * 109.47308 * 150.29850 * 1 2 3 33 33 H 1.08002 * 126.06917 * 0.03333 * 3 2 1 34 34 H 0.97001 * 119.99768 * 179.69159 * 5 4 3 35 35 H 1.08007 * 120.01097 * 359.97424 * 9 8 6 36 36 H 1.08001 * 119.89787 * 180.27438 * 10 9 8 37 37 H 1.08005 * 119.88624 * 179.74303 * 11 10 9 38 38 H 1.08002 * 126.36217 * 359.94208 * 14 13 12 39 39 H 1.08008 * 120.10199 * 179.97438 * 18 12 11 40 40 H 1.09004 * 109.47325 * 209.99758 * 20 19 4 41 41 H 1.09000 * 109.46993 * 329.99156 * 20 19 4 42 42 H 0.97002 * 119.99146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6193 0.7147 -0.0032 5 7 4.7496 1.5303 -0.0074 6 6 4.6129 2.8712 -0.0092 7 8 3.5040 3.3691 -0.0122 8 6 5.8116 3.7362 -0.0073 9 6 7.0865 3.1668 0.0019 10 6 8.2034 3.9767 -0.0023 11 6 8.0653 5.3525 -0.0040 12 6 6.8013 5.9286 -0.0076 13 7 6.6670 7.3249 -0.0088 14 6 7.6567 8.2440 -0.0074 15 7 7.0916 9.4230 -0.0099 16 7 5.8122 9.3120 -0.0122 17 7 5.4732 8.0678 -0.0172 18 6 5.6730 5.1241 -0.0089 19 7 3.6088 -0.6433 0.0041 20 6 4.7858 -1.5155 0.0088 21 6 5.1896 -1.8070 1.4312 22 1 4.6255 -1.3850 2.2498 23 6 6.2790 -2.6123 1.6873 24 7 6.9661 -3.1256 0.6904 25 14 6.7798 -2.9728 3.4504 26 1 5.8515 -2.2807 4.3801 27 1 6.7214 -4.4368 3.6921 28 1 8.1644 -2.4881 3.6807 29 7 2.2719 -1.0614 0.0060 30 1 -0.3633 0.0053 1.0277 31 1 -0.3633 0.8872 -0.5184 32 1 -0.3634 -0.8926 -0.5092 33 1 1.9875 2.1598 0.0005 34 1 5.6345 1.1329 -0.0050 35 1 7.1983 2.0926 0.0082 36 1 9.1889 3.5348 0.0004 37 1 8.9433 5.9815 -0.0032 38 1 8.7178 8.0425 -0.0042 39 1 4.6895 5.5704 -0.0112 40 1 4.5478 -2.4497 -0.5000 41 1 5.6076 -1.0196 -0.5078 42 1 7.7323 -3.6925 0.8707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058227908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:59 Heat of formation + Delta-G solvation = 200.885697 kcal Electronic energy + Delta-G solvation = -29464.158331 eV Core-core repulsion = 25256.483311 eV Total energy + Delta-G solvation = -4207.675020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.61382 -41.14133 -40.19652 -38.78995 -35.60913 -34.92090 -33.88367 -32.80998 -32.18389 -31.80840 -30.73510 -29.20338 -28.28969 -26.11990 -25.59478 -25.07845 -23.38724 -22.91061 -22.35402 -21.38141 -20.06525 -19.82589 -18.62309 -17.20648 -17.03203 -16.97922 -16.87600 -16.57034 -16.18571 -15.46042 -15.38729 -15.10266 -14.62615 -14.37874 -14.24031 -14.11067 -13.70436 -13.68969 -13.02586 -12.95461 -12.84179 -12.58721 -12.44830 -12.17499 -12.00531 -11.94706 -11.83230 -11.66075 -11.43670 -11.15108 -10.99320 -10.93076 -10.54117 -10.43497 -10.14629 -9.87602 -9.69645 -9.67115 -9.25784 -8.81594 -8.00400 -7.55758 -6.42567 -4.51252 -0.20966 0.31941 1.09193 1.26724 1.84202 2.19739 2.56159 2.84873 3.07580 3.17607 3.23018 3.30184 3.51327 3.57844 3.65417 3.74725 4.08497 4.16586 4.30282 4.36526 4.40223 4.51343 4.78189 4.88083 4.90802 4.92866 5.26947 5.28943 5.50140 5.58092 5.62913 5.66812 5.73718 5.99879 6.05308 6.08553 6.16755 6.20062 6.30140 6.56684 6.73136 6.95205 7.37535 7.46269 7.52121 7.69963 7.75948 7.96634 8.09884 8.52244 8.61756 9.16918 10.64412 Molecular weight = 353.13amu Principal moments of inertia in cm(-1) A = 0.010257 B = 0.002742 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.275689 B =10207.567252 C =12372.798114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.289 4.289 4 C 0.297 3.703 5 N -0.630 5.630 6 C 0.563 3.437 7 O -0.502 6.502 8 C -0.102 4.102 9 C -0.072 4.072 10 C -0.096 4.096 11 C -0.096 4.096 12 C 0.118 3.882 13 N -0.325 5.325 14 C 0.225 3.775 15 N -0.330 5.330 16 N -0.035 5.035 17 N -0.069 5.069 18 C -0.041 4.041 19 N -0.345 5.345 20 C 0.256 3.744 21 C -0.541 4.541 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.889 5.889 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.280 1.280 29 N -0.280 5.280 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.163 0.837 34 H 0.416 0.584 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.240 0.760 39 H 0.158 0.842 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.200 15.711 -2.977 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C -0.320 4.320 4 C 0.075 3.925 5 N -0.277 5.277 6 C 0.349 3.651 7 O -0.376 6.376 8 C -0.106 4.106 9 C -0.092 4.092 10 C -0.114 4.114 11 C -0.118 4.118 12 C 0.025 3.975 13 N -0.115 5.115 14 C -0.071 4.071 15 N -0.179 5.179 16 N -0.030 5.030 17 N -0.054 5.054 18 C -0.062 4.062 19 N -0.131 5.131 20 C 0.138 3.862 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.206 1.206 29 N -0.105 5.105 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.180 0.820 34 H 0.254 0.746 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.256 0.744 39 H 0.175 0.825 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.638 15.583 -3.032 16.539 hybrid contribution 1.821 -0.566 0.989 2.148 sum 6.459 15.017 -2.043 16.474 Atomic orbital electron populations 1.20033 0.87477 1.02422 1.02243 1.22032 0.96600 0.90932 1.01838 1.21291 0.89032 1.00559 1.21167 1.17947 0.87696 0.83343 1.03518 1.42531 1.08578 1.05225 1.71369 1.17873 0.88818 0.81053 0.77339 1.90754 1.25688 1.73760 1.47422 1.19660 0.93283 0.92953 1.04668 1.21728 0.91278 1.01539 0.94616 1.21026 0.99843 0.91759 0.98806 1.21080 0.94541 0.96280 0.99861 1.17367 0.95349 0.77346 1.07388 1.49079 1.06173 1.06946 1.49331 1.27453 0.98669 0.84171 0.96853 1.74500 1.00652 1.21375 1.21380 1.78121 1.05667 1.09506 1.09696 1.82789 1.03750 0.98164 1.20687 1.20994 0.98962 0.91708 0.94544 1.49516 1.06538 1.01942 1.55067 1.19637 0.77785 0.89781 0.98951 1.21389 1.13278 1.31927 0.91328 0.91608 1.24932 0.95703 0.94811 0.98202 1.69924 1.19187 1.32500 1.31088 0.86316 0.78330 0.78561 0.83626 1.19526 1.20484 1.20605 1.77355 0.86096 1.21783 1.25313 0.91242 0.91069 0.91488 0.82019 0.74633 0.83745 0.83186 0.84117 0.74370 0.82465 0.92424 0.93901 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.54 16 2 C 0.05 0.99 7.20 -82.46 -0.59 0.40 16 3 C -0.29 -5.72 9.58 -39.78 -0.38 -6.10 16 4 C 0.30 5.97 7.68 -152.74 -1.17 4.80 16 5 N -0.63 -10.21 5.36 -12.21 -0.07 -10.28 16 6 C 0.56 8.38 7.74 -12.34 -0.10 8.28 16 7 O -0.50 -8.79 13.47 5.31 0.07 -8.72 16 8 C -0.10 -1.12 5.87 -105.00 -0.62 -1.73 16 9 C -0.07 -0.60 9.54 -39.16 -0.37 -0.97 16 10 C -0.10 -0.54 10.02 -39.67 -0.40 -0.93 16 11 C -0.10 -0.50 9.48 -39.32 -0.37 -0.87 16 12 C 0.12 0.98 6.70 -83.62 -0.56 0.42 16 13 N -0.32 -3.00 3.85 -11.77 -0.05 -3.04 16 14 C 0.23 1.55 12.15 -90.15 -1.10 0.45 16 15 N -0.33 -3.50 12.15 29.64 0.36 -3.14 16 16 N -0.03 -0.45 13.39 60.35 0.81 0.36 16 17 N -0.07 -0.86 13.33 60.35 0.80 -0.05 16 18 C -0.04 -0.44 9.24 -39.00 -0.36 -0.80 16 19 N -0.34 -7.75 3.62 -61.45 -0.22 -7.97 16 20 C 0.26 6.08 6.02 -5.19 -0.03 6.05 16 21 C -0.54 -13.86 9.39 -34.44 -0.32 -14.19 16 22 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 23 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -23.13 13.29 55.43 0.74 -22.40 16 25 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 29 N -0.28 -6.32 12.56 33.64 0.42 -5.90 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.16 3.11 5.83 -52.49 -0.31 2.80 16 34 H 0.42 5.97 6.02 -40.82 -0.25 5.72 16 35 H 0.14 1.11 6.40 -52.48 -0.34 0.77 16 36 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.14 0.19 6.87 -52.48 -0.36 -0.17 16 38 H 0.24 0.20 7.18 -52.49 -0.38 -0.17 16 39 H 0.16 1.90 7.36 -52.48 -0.39 1.51 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.04 0.96 7.52 -51.93 -0.39 0.57 16 42 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -33.87 372.32 -6.70 -40.56 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.06 Total: 4.33 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -6.10 Total: -4.12 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 2.80 Total: -52.42 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.72 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.87 -6.70 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058227908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.448 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds