Wall clock time and date at job start Tue Mar 31 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99824 * 2 1 4 4 H 1.48510 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47630 * 300.00066 * 3 2 1 6 6 H 1.48501 * 109.47429 * 60.00569 * 3 2 1 7 7 C 1.38814 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 174.43584 * 7 2 1 9 9 N 1.36932 * 120.00212 * 354.42333 * 7 2 1 10 10 C 1.46923 * 120.63386 * 145.35862 * 9 7 2 11 11 C 1.53194 * 108.89704 * 126.29857 * 10 9 7 12 12 C 1.53350 * 109.14484 * 54.58050 * 11 10 9 13 13 C 1.50699 * 109.41697 * 178.67528 * 12 11 10 14 14 O 1.21284 * 120.00091 * 120.12738 * 13 12 11 15 15 N 1.34779 * 120.00125 * 300.12910 * 13 12 11 16 16 C 1.39956 * 120.00198 * 185.54804 * 15 13 12 17 17 C 1.38870 * 120.05802 * 214.35548 * 16 15 13 18 18 C 1.38111 * 119.93650 * 179.76911 * 17 16 15 19 19 C 1.38371 * 120.05751 * 0.50742 * 18 17 16 20 20 Br 1.89093 * 119.93608 * 179.72373 * 19 18 17 21 21 C 1.38363 * 120.12249 * 359.74341 * 19 18 17 22 22 C 1.38109 * 120.06023 * 0.02562 * 21 19 18 23 23 C 1.53041 * 109.61009 * 298.71290 * 12 11 10 24 24 C 1.46927 * 120.63082 * 325.33908 * 9 7 2 25 25 H 0.96996 * 119.99942 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.59042 * 246.16124 * 10 9 7 27 27 H 1.09006 * 109.58107 * 6.44239 * 10 9 7 28 28 H 1.09002 * 109.49567 * 174.65906 * 11 10 9 29 29 H 1.08996 * 109.49464 * 294.75794 * 11 10 9 30 30 H 1.09002 * 109.41987 * 58.75367 * 12 11 10 31 31 H 0.96997 * 119.99622 * 5.54700 * 15 13 12 32 32 H 1.07997 * 120.03099 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.97552 * 180.22878 * 18 17 16 34 34 H 1.07992 * 119.96584 * 179.97438 * 21 19 18 35 35 H 1.08000 * 120.02805 * 179.97438 * 22 21 19 36 36 H 1.08998 * 109.49632 * 301.42453 * 23 12 11 37 37 H 1.08994 * 109.49819 * 181.32750 * 23 12 11 38 38 H 1.08997 * 109.58971 * 353.41386 * 24 9 7 39 39 H 1.09007 * 109.58873 * 113.69687 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0865 -1.2044 -0.0912 9 7 1.3305 -2.3853 0.1142 10 6 1.7969 -3.5880 -0.5891 11 6 1.9526 -4.7263 0.4242 12 6 0.6317 -4.9099 1.1813 13 6 0.7680 -6.0499 2.1573 14 8 0.6095 -5.8547 3.3438 15 7 1.0659 -7.2866 1.7118 16 6 1.0783 -8.3669 2.6015 17 6 1.9894 -9.4005 2.4280 18 6 2.0026 -10.4629 3.3103 19 6 1.1022 -10.5032 4.3602 20 35 1.1181 -11.9634 5.5615 21 6 0.1899 -9.4773 4.5323 22 6 0.1755 -8.4101 3.6558 23 6 0.2926 -3.6256 1.9415 24 6 0.1209 -2.4763 0.9433 25 1 -0.4850 0.8400 0.0004 26 1 1.0691 -3.8723 -1.3491 27 1 2.7582 -3.3852 -1.0615 28 1 2.2066 -5.6477 -0.0998 29 1 2.7449 -4.4786 1.1306 30 1 -0.1649 -5.1328 0.4714 31 1 1.2717 -7.4278 0.7745 32 1 2.6896 -9.3714 1.6063 33 1 2.7133 -11.2653 3.1780 34 1 -0.5119 -9.5115 5.3523 35 1 -0.5371 -7.6097 3.7904 36 1 1.1005 -3.3886 2.6337 37 1 -0.6342 -3.7660 2.4976 38 1 -0.0227 -1.5410 1.4842 39 1 -0.7441 -2.6675 0.3080 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058244015.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:38 Heat of formation + Delta-G solvation = 7.277425 kcal Electronic energy + Delta-G solvation = -22415.834360 eV Core-core repulsion = 18983.743729 eV Total energy + Delta-G solvation = -3432.090631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 352.053 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.76513 -38.92546 -37.01314 -35.02457 -33.28048 -31.77723 -31.34203 -30.62259 -29.90442 -28.53892 -25.79199 -23.59582 -23.11648 -22.34511 -21.82383 -20.36815 -19.20064 -18.08912 -16.98421 -16.80343 -16.14687 -15.52748 -14.90108 -14.80873 -14.50725 -14.03903 -13.83548 -13.70798 -13.59029 -13.39647 -13.08542 -12.54844 -12.38076 -12.07918 -11.79817 -11.62335 -11.30514 -11.08577 -10.96053 -10.82450 -10.53591 -10.35559 -10.27106 -10.15002 -10.07339 -9.89281 -9.65861 -9.43854 -9.25587 -8.51615 -8.29402 -6.62327 -5.82500 -3.34679 0.78133 1.04845 1.39919 2.59263 2.93527 3.34758 3.42346 3.43107 3.44071 4.45019 4.47834 4.61438 4.77660 4.99756 5.09940 5.20006 5.23112 5.28586 5.39696 5.50483 5.62571 5.69908 5.72415 5.95171 5.96744 6.03870 6.18211 6.19108 6.25056 6.54030 6.60326 6.64032 6.69117 6.74476 6.85221 7.24486 7.37633 7.67655 7.76547 8.10752 8.46707 9.19394 9.78857 10.38069 11.25557 Molecular weight = 352.05amu Principal moments of inertia in cm(-1) A = 0.040964 B = 0.001867 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.362287 B =14997.438189 C =15209.026875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.063 0.937 9 N -0.593 5.593 10 C 0.147 3.853 11 C -0.125 4.125 12 C -0.095 4.095 13 C 0.519 3.481 14 O -0.516 6.516 15 N -0.681 5.681 16 C 0.175 3.825 17 C -0.146 4.146 18 C -0.070 4.070 19 C -0.113 4.113 20 Br -0.059 7.059 21 C -0.069 4.069 22 C -0.119 4.119 23 C -0.121 4.121 24 C 0.171 3.829 25 H 0.254 0.746 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 -25.374 6.123 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.165 4.165 12 C -0.116 4.116 13 C 0.308 3.692 14 O -0.389 6.389 15 N -0.327 5.327 16 C 0.079 3.921 17 C -0.167 4.167 18 C -0.090 4.090 19 C -0.194 4.194 20 Br 0.026 6.974 21 C -0.089 4.089 22 C -0.140 4.140 23 C -0.160 4.160 24 C 0.045 3.955 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.250 0.750 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.011 -25.514 7.383 26.580 hybrid contribution 0.525 1.032 -0.731 1.369 sum 1.537 -24.481 6.653 25.416 Atomic orbital electron populations 1.69945 1.05311 1.25490 1.54025 1.25279 0.95492 0.98477 0.99920 0.86186 0.79307 0.83749 0.77304 1.20205 1.21558 1.21528 1.19181 0.90169 0.83377 1.45798 0.91888 1.43999 1.29661 1.05931 1.51939 1.20886 0.98105 0.87044 0.91959 1.22141 0.95170 0.99699 0.99463 1.21420 1.00457 0.93160 0.96558 1.21581 0.74181 0.83066 0.90355 1.90690 1.47472 1.83413 1.17374 1.43886 1.70350 1.06481 1.11967 1.17946 0.93933 0.88002 0.92199 1.20928 0.99065 0.94996 1.01757 1.20869 0.97285 0.98147 0.92727 1.21696 1.02879 0.96080 0.98698 1.96689 1.98697 1.41631 1.60343 1.20994 0.97215 0.91867 0.98850 1.21190 0.98897 0.98651 0.95232 1.22107 1.01014 0.93935 0.98972 1.20849 0.87933 0.95938 0.90730 0.93546 0.96189 0.92387 0.92913 0.91691 0.88734 0.75013 0.84717 0.84757 0.84762 0.83955 0.91965 0.92564 0.89031 0.96237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 11.02 55.49 0.61 -25.09 16 2 C 0.01 0.20 5.14 -17.43 -0.09 0.11 16 3 Si 0.90 21.38 29.56 -169.99 -5.02 16.36 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.84 9.56 -15.06 -0.14 -6.98 16 8 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 9 N -0.59 -14.29 2.98 -172.32 -0.51 -14.80 16 10 C 0.15 2.82 6.50 -3.71 -0.02 2.79 16 11 C -0.13 -1.91 5.29 -26.45 -0.14 -2.05 16 12 C -0.09 -1.47 2.50 -91.57 -0.23 -1.70 16 13 C 0.52 7.67 6.88 -10.98 -0.08 7.59 16 14 O -0.52 -9.31 13.77 5.55 0.08 -9.23 16 15 N -0.68 -7.66 5.26 -9.86 -0.05 -7.71 16 16 C 0.17 2.00 6.25 -83.68 -0.52 1.48 16 17 C -0.15 -1.36 9.96 -39.39 -0.39 -1.75 16 18 C -0.07 -0.64 9.78 -39.58 -0.39 -1.02 16 19 C -0.11 -1.14 6.23 -39.49 -0.25 -1.39 16 20 Br -0.06 -0.53 33.70 -68.01 -2.29 -2.82 16 21 C -0.07 -0.74 9.78 -39.58 -0.39 -1.13 16 22 C -0.12 -1.45 8.65 -39.40 -0.34 -1.79 16 23 C -0.12 -2.32 4.66 -26.61 -0.12 -2.45 16 24 C 0.17 3.97 5.22 -3.71 -0.02 3.95 16 25 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 28 H 0.05 0.60 7.42 -51.93 -0.39 0.22 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.41 3.41 8.07 -40.82 -0.33 3.08 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.14 1.92 6.52 -52.49 -0.34 1.57 16 36 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 37 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 38 H 0.09 2.42 6.20 -51.93 -0.32 2.10 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -30.58 339.24 -10.34 -40.92 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.14 Total: 1.59 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -3.12 Total: -4.34 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.05 Total: -47.60 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.58 -10.34 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058244015.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.202 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds