Wall clock time and date at job start Tue Mar 31 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46906 * 109.47405 * 2 1 4 4 C 1.46906 * 110.99948 * 287.90857 * 3 2 1 5 5 C 1.50698 * 109.46811 * 160.34840 * 4 3 2 6 6 H 1.08003 * 120.00314 * 4.72125 * 5 4 3 7 7 C 1.37880 * 119.99646 * 184.72368 * 5 4 3 8 8 N 1.31510 * 120.00016 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99759 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47128 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47127 * 120.00047 * 9 7 5 12 12 H 1.48495 * 109.47151 * 239.99692 * 9 7 5 13 13 C 1.46890 * 111.00020 * 163.95162 * 3 2 1 14 14 N 1.46497 * 109.47380 * 278.95194 * 13 3 2 15 15 N 1.39296 * 118.65672 * 284.98439 * 14 13 3 16 16 C 1.29914 * 123.39630 * 180.02562 * 15 14 13 17 17 C 1.46079 * 119.78035 * 0.02562 * 16 15 14 18 18 C 1.37233 * 137.24911 * 180.30012 * 17 16 15 19 19 N 1.34978 * 106.79582 * 180.08456 * 18 17 16 20 20 C 1.40091 * 124.09419 * 179.87834 * 19 18 17 21 21 C 1.38864 * 120.06781 * 179.72560 * 20 19 18 22 22 C 1.38111 * 119.92728 * 179.97438 * 21 20 19 23 23 C 1.38284 * 120.07139 * 0.02562 * 22 21 20 24 24 C 1.38282 * 120.13879 * 359.97438 * 23 22 21 25 25 C 1.38109 * 120.06916 * 0.02562 * 24 23 22 26 26 N 1.28626 * 111.80837 * 359.60902 * 19 18 17 27 27 C 1.31015 * 110.80241 * 0.24260 * 26 19 18 28 28 C 1.34932 * 118.64831 * 104.99870 * 14 13 3 29 29 O 1.21786 * 120.65186 * 0.02562 * 28 14 13 30 30 H 1.09002 * 109.47110 * 59.12672 * 1 2 3 31 31 H 1.08995 * 109.47371 * 179.12268 * 1 2 3 32 32 H 1.08998 * 109.47198 * 299.13101 * 1 2 3 33 33 H 1.09003 * 109.47141 * 240.00711 * 2 1 3 34 34 H 1.09000 * 109.47051 * 119.99948 * 2 1 3 35 35 H 1.08995 * 109.46897 * 280.34999 * 4 3 2 36 36 H 1.09002 * 109.46967 * 40.35152 * 4 3 2 37 37 H 0.96998 * 119.99924 * 179.97438 * 8 7 5 38 38 H 1.09007 * 109.47226 * 158.95579 * 13 3 2 39 39 H 1.09002 * 109.47270 * 38.95698 * 13 3 2 40 40 H 1.08008 * 120.10743 * 179.97438 * 16 15 14 41 41 H 1.07996 * 126.59911 * 359.94073 * 18 17 16 42 42 H 1.07995 * 120.03378 * 359.97438 * 21 20 19 43 43 H 1.08003 * 119.96219 * 179.72084 * 22 21 20 44 44 H 1.08005 * 119.92978 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.96254 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.03688 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.7977 2.0220 -1.3050 5 6 1.8485 3.5199 -1.1480 6 1 2.1031 3.9544 -0.1926 7 6 1.5700 4.3356 -2.2241 8 7 1.2604 3.8065 -3.3876 9 14 1.6323 6.1924 -2.0293 10 1 2.0018 6.5314 -0.6315 11 1 2.6446 6.7540 -2.9595 12 1 0.2996 6.7680 -2.3419 13 6 3.4378 1.4420 0.3791 14 7 3.5565 1.3728 1.8376 15 7 3.2325 2.5005 2.5884 16 6 3.3047 2.5413 3.8849 17 6 3.7453 1.3611 4.6246 18 6 3.9434 1.0099 5.9363 19 7 4.3738 -0.2695 5.9368 20 6 4.6898 -0.9913 7.0951 21 6 5.1205 -2.3079 6.9985 22 6 5.4318 -3.0166 8.1423 23 6 5.3146 -2.4167 9.3827 24 6 4.8860 -1.1057 9.4821 25 6 4.5731 -0.3916 8.3421 26 7 4.4532 -0.7473 4.7452 27 6 4.0965 0.1497 3.8594 28 6 3.9756 0.2194 2.3986 29 8 4.2498 -0.7441 1.7060 30 1 -0.3633 0.5273 -0.8821 31 1 -0.3634 -1.0275 -0.0157 32 1 -0.3633 0.5003 0.8977 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 2.5730 1.7030 -2.0016 36 1 0.8207 1.7300 -1.6902 37 1 1.0641 4.3804 -4.1445 38 1 3.8718 2.3764 0.0232 39 1 3.9677 0.6014 -0.0689 40 1 3.0407 3.4451 4.4141 41 1 3.7875 1.6371 6.8015 42 1 5.2119 -2.7771 6.0301 43 1 5.7625 -4.0421 8.0682 44 1 5.5582 -2.9732 10.2757 45 1 4.7950 -0.6401 10.4523 46 1 4.2388 0.6324 8.4203 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058247906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:31 Heat of formation + Delta-G solvation = 145.375300 kcal Electronic energy + Delta-G solvation = -30261.412290 eV Core-core repulsion = 26154.870502 eV Total energy + Delta-G solvation = -4106.541788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.19055 -40.10737 -39.34371 -36.91530 -36.60700 -33.95611 -32.69636 -32.42300 -31.79266 -30.67133 -29.86012 -29.66625 -27.17055 -25.63958 -24.80355 -23.66883 -22.81098 -22.54889 -22.02477 -20.88385 -19.85564 -19.21966 -18.38102 -17.36706 -16.70226 -16.48229 -16.38120 -16.32896 -15.51106 -15.46580 -15.07280 -14.85435 -14.58371 -14.32501 -14.11037 -13.87197 -13.66099 -13.45493 -13.21604 -13.03897 -12.46190 -12.26984 -12.24038 -11.82881 -11.79349 -11.50119 -11.33037 -11.17157 -11.02037 -10.84564 -10.60793 -10.56174 -10.47771 -10.25419 -9.93265 -9.71366 -9.65632 -9.62593 -9.19186 -8.83699 -8.39400 -8.15277 -7.33151 -5.97642 -3.98224 0.17498 0.72510 1.21012 1.45504 1.73614 2.43387 2.56294 3.19890 3.35560 3.43054 3.49105 3.52364 3.56120 3.96944 4.18098 4.26612 4.42320 4.47682 4.56290 4.66214 4.75325 4.83889 4.91070 4.95232 5.10823 5.36565 5.38381 5.52416 5.64777 5.66919 5.72682 5.74967 5.83436 5.91086 5.97101 6.10223 6.12866 6.19152 6.26235 6.39727 6.42985 6.52433 6.62107 6.85347 7.16482 7.32225 7.43520 7.87245 7.92789 8.08869 8.19074 8.32237 8.55164 9.11708 9.65875 11.12960 Molecular weight = 353.16amu Principal moments of inertia in cm(-1) A = 0.020064 B = 0.002247 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.213481 B =12460.441080 C =13294.413951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 N -0.542 5.542 4 C 0.196 3.804 5 C -0.503 4.503 6 H 0.070 0.930 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.298 3.702 14 N -0.407 5.407 15 N -0.199 5.199 16 C 0.133 3.867 17 C -0.194 4.194 18 C 0.033 3.967 19 N -0.230 5.230 20 C 0.133 3.867 21 C -0.106 4.106 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.097 4.097 25 C -0.126 4.126 26 N -0.223 5.223 27 C 0.005 3.995 28 C 0.573 3.427 29 O -0.517 6.517 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.054 0.946 35 H -0.008 1.008 36 H 0.043 0.957 37 H 0.260 0.740 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.193 0.807 41 H 0.198 0.802 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 -8.818 28.219 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 N -0.268 5.268 4 C 0.071 3.929 5 C -0.541 4.541 6 H 0.088 0.912 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.212 1.212 13 C 0.087 3.913 14 N -0.228 5.228 15 N -0.005 5.005 16 C -0.075 4.075 17 C -0.206 4.206 18 C -0.112 4.112 19 N -0.010 5.010 20 C 0.042 3.958 21 C -0.126 4.126 22 C -0.117 4.117 23 C -0.137 4.137 24 C -0.116 4.116 25 C -0.146 4.146 26 N -0.052 5.052 27 C -0.161 4.161 28 C 0.359 3.641 29 O -0.389 6.389 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.010 0.990 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.209 0.791 41 H 0.215 0.785 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.330 -9.758 27.161 29.777 hybrid contribution 0.248 0.797 0.114 0.843 sum 7.578 -8.961 27.275 29.693 Atomic orbital electron populations 1.21722 0.95352 0.99948 1.02791 1.22035 0.96053 0.90193 0.99388 1.61795 1.15152 1.15002 1.34845 1.19783 0.96930 0.94377 0.81764 1.21275 1.45899 0.90341 0.96630 0.91181 1.24991 0.95529 0.98966 0.95207 1.69968 1.47889 1.35133 1.01038 0.86449 0.77421 0.85405 0.78211 1.19459 1.21284 1.21209 1.22094 0.91884 1.03581 0.73692 1.49270 1.58720 1.06244 1.08573 1.74563 1.10147 1.08616 1.07207 1.24124 0.98575 0.96156 0.88680 1.21396 1.09697 0.96917 0.92633 1.22629 1.03112 0.86773 0.98654 1.42715 1.45189 1.09033 1.04025 1.17712 1.02862 0.92421 0.82756 1.21082 0.98642 0.92025 1.00814 1.21149 0.98612 1.00336 0.91566 1.21354 0.99109 0.95254 0.98019 1.21023 0.98170 0.94414 0.97945 1.20899 1.02599 1.01037 0.90060 1.73042 1.18714 1.24454 0.88970 1.22995 1.06004 0.91892 0.95201 1.17167 0.78809 0.83578 0.84532 1.90879 1.49582 1.34879 1.63556 0.91787 0.93658 0.92699 0.95408 0.92756 0.98975 0.93935 0.93061 0.86933 0.90792 0.79075 0.78495 0.83899 0.84661 0.85088 0.84573 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.99 37.16 0.37 -2.27 16 2 C 0.05 1.06 5.53 -3.82 -0.02 1.04 16 3 N -0.54 -12.17 4.48 -239.98 -1.07 -13.25 16 4 C 0.20 5.07 4.54 -4.97 -0.02 5.04 16 5 C -0.50 -13.92 8.51 -34.44 -0.29 -14.22 16 6 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.30 6.21 5.39 -63.33 -0.34 5.87 16 14 N -0.41 -7.81 3.66 -64.55 -0.24 -8.05 16 15 N -0.20 -3.45 11.31 31.85 0.36 -3.09 16 16 C 0.13 1.69 11.62 -15.22 -0.18 1.51 16 17 C -0.19 -2.48 6.68 -103.33 -0.69 -3.18 16 18 C 0.03 0.31 10.80 -16.53 -0.18 0.13 16 19 N -0.23 -2.67 3.48 -10.32 -0.04 -2.70 16 20 C 0.13 1.21 6.64 -83.62 -0.56 0.66 16 21 C -0.11 -0.93 9.57 -39.40 -0.38 -1.31 16 22 C -0.10 -0.59 10.04 -39.61 -0.40 -0.99 16 23 C -0.12 -0.56 10.04 -39.55 -0.40 -0.96 16 24 C -0.10 -0.44 10.04 -39.61 -0.40 -0.84 16 25 C -0.13 -0.75 9.41 -39.40 -0.37 -1.12 16 26 N -0.22 -3.42 11.00 34.38 0.38 -3.04 16 27 C 0.01 0.09 7.76 -80.99 -0.63 -0.54 16 28 C 0.57 11.07 7.00 -12.75 -0.09 10.98 16 29 O -0.52 -11.16 15.78 5.11 0.08 -11.08 16 30 H 0.06 1.29 6.52 -51.93 -0.34 0.95 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 34 H 0.05 1.12 6.46 -51.93 -0.34 0.79 16 35 H -0.01 -0.21 8.00 -51.93 -0.42 -0.62 16 36 H 0.04 1.17 6.24 -51.93 -0.32 0.85 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.11 2.43 7.25 -51.93 -0.38 2.06 16 39 H 0.07 1.54 6.73 -51.93 -0.35 1.19 16 40 H 0.19 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.20 0.85 6.86 -52.49 -0.36 0.49 16 42 H 0.14 1.41 7.60 -52.49 -0.40 1.01 16 43 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 44 H 0.13 0.31 8.06 -52.48 -0.42 -0.11 16 45 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 46 H 0.14 0.47 6.56 -52.48 -0.34 0.12 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -35.58 387.80 -9.38 -44.96 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.74 Total: -1.58 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -4.66 Total: 1.24 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.13 Total: -55.97 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.58 -9.38 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058247906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.333 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds