Wall clock time and date at job start Tue Mar 31 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39702 * 125.77383 * 2 1 4 4 C 1.36199 * 107.85851 * 180.15290 * 3 2 1 5 5 N 1.39265 * 126.26991 * 179.88511 * 4 3 2 6 6 C 1.34778 * 119.99694 * 359.68303 * 5 4 3 7 7 O 1.21527 * 120.00063 * 0.02562 * 6 5 4 8 8 C 1.48117 * 119.99728 * 180.02562 * 6 5 4 9 9 C 1.35507 * 118.72085 * 180.02562 * 8 6 5 10 10 C 1.47027 * 118.78030 * 179.97438 * 9 8 6 11 11 O 1.21841 * 121.59931 * 179.97438 * 10 9 8 12 12 C 1.47556 * 116.80596 * 359.97438 * 10 9 8 13 13 C 1.39453 * 121.32736 * 179.97438 * 12 10 9 14 14 C 1.36735 * 119.67112 * 180.02562 * 13 12 10 15 15 C 1.38797 * 120.39379 * 359.97438 * 14 13 12 16 16 C 1.37802 * 120.75004 * 359.97438 * 15 14 13 17 17 C 1.39149 * 119.84368 * 0.04004 * 16 15 14 18 18 O 1.34108 * 118.71926 * 359.97438 * 8 6 5 19 19 N 1.35833 * 107.45990 * 359.61750 * 4 3 2 20 20 C 1.46501 * 126.09847 * 180.22232 * 19 4 3 21 21 C 1.50692 * 109.47257 * 89.99601 * 20 19 4 22 22 H 1.08002 * 120.00130 * 0.02562 * 21 20 19 23 23 C 1.37885 * 119.99965 * 180.02562 * 21 20 19 24 24 N 1.31507 * 119.99846 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99969 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46942 * 90.00063 * 25 23 21 27 27 H 1.48497 * 109.46956 * 210.00333 * 25 23 21 28 28 H 1.48501 * 109.46828 * 330.00176 * 25 23 21 29 29 N 1.30844 * 125.77287 * 179.72559 * 2 1 3 30 30 H 1.08997 * 109.46963 * 270.25218 * 1 2 3 31 31 H 1.09001 * 109.46813 * 30.25209 * 1 2 3 32 32 H 1.08996 * 109.47091 * 150.24917 * 1 2 3 33 33 H 1.08004 * 126.07390 * 0.02562 * 3 2 1 34 34 H 0.96999 * 119.99739 * 179.68957 * 5 4 3 35 35 H 1.08001 * 120.61390 * 359.97438 * 9 8 6 36 36 H 1.08001 * 120.16917 * 0.02562 * 13 12 10 37 37 H 1.07997 * 119.80690 * 179.72658 * 14 13 12 38 38 H 1.08001 * 119.62392 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.07720 * 179.97438 * 16 15 14 40 40 H 1.09004 * 109.47374 * 210.00444 * 20 19 4 41 41 H 1.09005 * 109.46750 * 329.99646 * 20 19 4 42 42 H 0.97007 * 120.00080 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3237 1.1334 0.0000 4 6 3.6197 0.7145 -0.0035 5 7 4.7490 1.5294 -0.0069 6 6 4.6124 2.8702 -0.0134 7 8 3.5037 3.3681 -0.0159 8 6 5.8134 3.7370 -0.0176 9 6 5.6461 5.0817 -0.0237 10 6 6.8374 5.9433 -0.0273 11 8 6.7466 7.1583 -0.0332 12 6 8.1484 5.2661 -0.0234 13 6 9.3393 5.9917 -0.0269 14 6 10.5355 5.3293 -0.0237 15 6 10.5699 3.9418 -0.0164 16 6 9.4034 3.2081 -0.0118 17 6 8.1746 3.8611 -0.0153 18 8 7.0242 3.1604 -0.0143 19 7 3.6089 -0.6438 0.0031 20 6 4.7858 -1.5163 0.0069 21 6 5.1898 -1.8085 1.4289 22 1 4.6261 -1.3869 2.2480 23 6 6.2792 -2.6142 1.6844 24 7 6.9659 -3.1272 0.6870 25 14 6.7797 -2.9771 3.4472 26 1 6.0790 -4.1984 3.9192 27 1 8.2476 -3.1927 3.5105 28 1 6.4103 -1.8285 4.3129 29 7 2.2719 -1.0616 0.0051 30 1 -0.3633 0.0045 1.0276 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8922 -0.5099 33 1 1.9872 2.1597 0.0004 34 1 5.6338 1.1320 -0.0047 35 1 4.6558 5.5126 -0.0258 36 1 9.3170 7.0714 -0.0321 37 1 11.4591 5.8890 -0.0309 38 1 11.5216 3.4313 -0.0144 39 1 9.4428 2.1288 -0.0066 40 1 4.5475 -2.4501 -0.5024 41 1 5.6075 -1.0202 -0.5097 42 1 7.7326 -3.6937 0.8666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058283077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:26 Heat of formation + Delta-G solvation = 30.378258 kcal Electronic energy + Delta-G solvation = -30038.142677 eV Core-core repulsion = 25758.488397 eV Total energy + Delta-G solvation = -4279.654279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17971 -40.97997 -39.53778 -38.92737 -38.22441 -35.10541 -33.90595 -33.00641 -32.17891 -31.50118 -31.05219 -29.29562 -28.52318 -26.17107 -25.83049 -24.61194 -23.09553 -22.71415 -21.98403 -20.10933 -20.07160 -19.46241 -18.51589 -17.99334 -16.99165 -16.85723 -16.61519 -16.15931 -15.91881 -15.55622 -15.26740 -15.07164 -14.65434 -14.49713 -14.38793 -14.29686 -14.16846 -14.10422 -13.23650 -12.99279 -12.85663 -12.77828 -12.60571 -12.51171 -12.16055 -11.90266 -11.67182 -11.58504 -11.16875 -10.95850 -10.65115 -10.55209 -10.38002 -10.10880 -10.05813 -9.89020 -9.77562 -9.54712 -8.77987 -8.73899 -8.04863 -7.63638 -6.39619 -4.48380 -0.03995 0.37439 0.99781 1.71499 2.08212 2.45915 2.53993 2.99006 3.12578 3.19729 3.23513 3.39773 3.46864 3.49092 3.67779 4.03793 4.16099 4.20112 4.47783 4.63432 4.79711 4.86376 4.93809 4.93913 5.13425 5.23893 5.46676 5.49909 5.55799 5.59949 5.86938 5.93388 5.97333 5.98404 6.01514 6.10669 6.20659 6.23793 6.46593 6.72822 6.83004 6.94433 7.17487 7.28692 7.40378 7.50434 7.60364 7.72336 7.97144 8.49096 8.61186 9.19569 10.67507 Molecular weight = 353.12amu Principal moments of inertia in cm(-1) A = 0.008197 B = 0.003683 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.940742 B = 7599.887568 C =10465.912766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.286 4.286 4 C 0.292 3.708 5 N -0.617 5.617 6 C 0.579 3.421 7 O -0.478 6.478 8 C 0.111 3.889 9 C -0.232 4.232 10 C 0.424 3.576 11 O -0.453 6.453 12 C -0.229 4.229 13 C -0.030 4.030 14 C -0.151 4.151 15 C -0.052 4.052 16 C -0.138 4.138 17 C 0.160 3.840 18 O -0.221 6.221 19 N -0.341 5.341 20 C 0.255 3.745 21 C -0.543 4.543 22 H 0.065 0.935 23 C 0.069 3.931 24 N -0.889 5.889 25 Si 0.905 3.095 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.272 1.272 29 N -0.276 5.276 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.163 0.837 34 H 0.425 0.575 35 H 0.178 0.822 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.590 14.317 -3.007 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.318 4.318 4 C 0.070 3.930 5 N -0.263 5.263 6 C 0.363 3.637 7 O -0.351 6.351 8 C 0.060 3.940 9 C -0.254 4.254 10 C 0.306 3.694 11 O -0.333 6.333 12 C -0.231 4.231 13 C -0.048 4.048 14 C -0.169 4.169 15 C -0.070 4.070 16 C -0.156 4.156 17 C 0.115 3.885 18 O -0.126 6.126 19 N -0.127 5.127 20 C 0.138 3.862 21 C -0.581 4.581 22 H 0.084 0.916 23 C -0.135 4.135 24 N -0.526 5.526 25 Si 0.732 3.268 26 H -0.201 1.201 27 H -0.208 1.208 28 H -0.197 1.197 29 N -0.102 5.102 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.180 0.820 34 H 0.264 0.736 35 H 0.195 0.805 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.120 13.585 -3.062 14.838 hybrid contribution 1.055 0.293 0.992 1.477 sum 6.175 13.879 -2.070 15.331 Atomic orbital electron populations 1.20042 0.87357 1.02494 1.02308 1.22026 0.96653 0.90821 1.01836 1.21284 0.88925 1.00600 1.20973 1.17924 0.87450 0.83514 1.04102 1.42483 1.09376 1.04892 1.69538 1.17269 0.86747 0.81175 0.78540 1.90823 1.22889 1.73560 1.47858 1.21742 0.82069 0.92935 0.97205 1.24192 1.02866 0.91723 1.06577 1.19824 0.87304 0.88648 0.73584 1.90708 1.88580 1.14623 1.39347 1.20700 0.97007 0.92746 1.12606 1.20848 0.90304 1.00791 0.92903 1.21010 0.98317 0.94549 1.03069 1.21274 0.97869 0.93951 0.93920 1.20694 0.88265 1.01878 1.04756 1.19321 0.84077 0.89147 0.95945 1.82876 1.11217 1.39924 1.78589 1.49572 1.06623 1.01854 1.54608 1.19680 0.77707 0.89757 0.99059 1.21330 1.13451 1.32096 0.91232 0.91648 1.24919 0.95617 0.94786 0.98193 1.69912 1.19159 1.32394 1.31136 0.86365 0.77679 0.79140 0.83608 1.20146 1.20792 1.19671 1.77378 0.86048 1.21769 1.24986 0.91177 0.91019 0.91424 0.81992 0.73647 0.80508 0.84079 0.84639 0.83988 0.83114 0.92331 0.93712 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.44 36.01 0.38 -0.51 16 2 C 0.05 0.98 7.20 -82.46 -0.59 0.39 16 3 C -0.29 -5.52 9.58 -39.77 -0.38 -5.90 16 4 C 0.29 5.87 7.68 -152.82 -1.17 4.70 16 5 N -0.62 -10.46 5.40 -12.13 -0.07 -10.53 16 6 C 0.58 8.89 7.76 -12.20 -0.09 8.80 16 7 O -0.48 -8.03 13.30 5.34 0.07 -7.96 16 8 C 0.11 1.45 6.88 -36.50 -0.25 1.20 16 9 C -0.23 -2.93 9.76 -37.00 -0.36 -3.29 16 10 C 0.42 5.55 7.18 -32.22 -0.23 5.32 16 11 O -0.45 -6.81 17.42 5.06 0.09 -6.73 16 12 C -0.23 -2.65 5.89 -104.78 -0.62 -3.26 16 13 C -0.03 -0.28 9.62 -39.67 -0.38 -0.67 16 14 C -0.15 -1.09 9.98 -39.92 -0.40 -1.49 16 15 C -0.05 -0.38 10.01 -39.53 -0.40 -0.77 16 16 C -0.14 -1.28 10.01 -39.40 -0.39 -1.68 16 17 C 0.16 1.83 6.78 -38.38 -0.26 1.57 16 18 O -0.22 -2.76 8.88 5.14 0.05 -2.71 16 19 N -0.34 -7.67 3.62 -61.46 -0.22 -7.90 16 20 C 0.26 6.15 6.02 -5.20 -0.03 6.12 16 21 C -0.54 -14.13 9.39 -34.44 -0.32 -14.45 16 22 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -23.49 13.29 55.43 0.74 -22.75 16 25 Si 0.91 20.13 29.54 -169.99 -5.02 15.10 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 N -0.28 -6.17 12.56 33.64 0.42 -5.75 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.16 2.96 5.83 -52.48 -0.31 2.66 16 34 H 0.43 6.83 7.34 -40.82 -0.30 6.53 16 35 H 0.18 2.13 7.50 -52.49 -0.39 1.73 16 36 H 0.14 1.19 7.80 -52.49 -0.41 0.78 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.05 1.04 7.52 -51.93 -0.39 0.65 16 42 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -30.93 373.83 -8.23 -39.15 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.30 Total: 6.68 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -5.61 Total: -2.25 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.87 Total: -46.92 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.20 Total: -17.40 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.93 -8.23 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058283077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.530 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds