Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00314 * 2 1 4 4 C 1.50696 * 109.47209 * 66.04494 * 3 2 1 5 5 O 1.21404 * 120.00093 * 0.02562 * 4 3 2 6 6 C 1.41735 * 119.99982 * 179.97438 * 4 3 2 7 7 C 1.37860 * 126.91196 * 359.97438 * 6 4 3 8 8 N 1.34665 * 109.61978 * 179.97438 * 7 6 4 9 9 C 1.46507 * 124.64296 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46557 * 264.99685 * 9 8 7 11 11 H 1.07994 * 120.00069 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99588 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00101 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99916 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47055 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47166 * 119.99956 * 14 12 10 17 17 H 1.48504 * 109.46791 * 239.99752 * 14 12 10 18 18 C 1.38017 * 110.71166 * 359.97438 * 8 7 6 19 19 C 1.39143 * 133.04094 * 180.02562 * 18 8 7 20 20 C 1.37773 * 119.94640 * 179.97438 * 19 18 8 21 21 C 1.38721 * 120.63971 * 0.02587 * 20 19 18 22 22 C 1.37806 * 120.26842 * 359.97438 * 21 20 19 23 23 C 1.39193 * 119.67024 * 0.25865 * 22 21 20 24 24 C 1.46903 * 110.99978 * 236.04369 * 2 1 3 25 25 C 1.50699 * 109.47012 * 293.95732 * 24 2 1 26 26 C 1.34512 * 125.79097 * 89.99778 * 25 24 2 27 27 C 1.41387 * 106.84166 * 180.02562 * 26 25 24 28 28 C 1.34513 * 106.83985 * 0.02562 * 27 26 25 29 29 O 1.34306 * 108.42154 * 359.73454 * 28 27 26 30 30 H 1.08999 * 109.47024 * 59.99817 * 1 2 3 31 31 H 1.08999 * 109.47519 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46590 * 300.00110 * 1 2 3 33 33 H 1.09001 * 109.46888 * 306.04744 * 3 2 1 34 34 H 1.09005 * 109.47467 * 186.04627 * 3 2 1 35 35 H 1.08009 * 125.18731 * 359.97438 * 7 6 4 36 36 H 1.08999 * 109.47389 * 24.99338 * 9 8 7 37 37 H 1.08998 * 109.46661 * 145.00029 * 9 8 7 38 38 H 0.97001 * 120.00005 * 179.97438 * 13 12 10 39 39 H 1.08001 * 120.02350 * 359.97438 * 19 18 8 40 40 H 1.07999 * 119.67971 * 179.97438 * 20 19 18 41 41 H 1.07997 * 119.87195 * 179.97438 * 21 20 19 42 42 H 1.08002 * 120.16161 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.46910 * 53.95570 * 24 2 1 44 44 H 1.08998 * 109.47148 * 173.95572 * 24 2 1 45 45 H 1.08004 * 126.58143 * 359.96650 * 26 25 24 46 46 H 1.08002 * 126.57852 * 179.97438 * 27 26 25 47 47 H 1.08000 * 125.78989 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0049 1.4448 2.1419 6 6 2.0388 3.3855 1.5353 7 6 2.7571 4.1974 0.6836 8 7 2.9455 5.4009 1.2578 9 6 3.6681 6.5150 0.6389 10 6 5.1020 6.5029 1.1026 11 1 5.4411 5.7413 1.7891 12 6 5.9808 7.4641 0.6503 13 7 5.5680 8.3912 -0.1862 14 14 7.7584 7.4487 1.2243 15 1 7.9679 6.3113 2.1557 16 1 8.6563 7.3002 0.0509 17 1 8.0638 8.7229 1.9232 18 6 2.3635 5.4414 2.5086 19 6 2.2769 6.4297 3.4842 20 6 1.6143 6.1744 4.6649 21 6 1.0299 4.9375 4.8944 22 6 1.1050 3.9459 3.9403 23 6 1.7756 4.1892 2.7451 24 6 1.9955 -0.7660 -1.1376 25 6 1.6369 -2.2204 -0.9728 26 6 0.5188 -2.8117 -1.4306 27 6 0.5920 -4.1728 -1.0550 28 6 1.7502 -4.3317 -0.3897 29 8 2.3815 -3.1470 -0.3477 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.5612 1.9273 -0.8309 34 1 3.0798 1.3444 -0.1082 35 1 3.1142 3.9119 -0.2949 36 1 3.6361 6.4112 -0.4456 37 1 3.2007 7.4563 0.9279 38 1 6.1862 9.0677 -0.5041 39 1 2.7288 7.3961 3.3160 40 1 1.5501 6.9445 5.4193 41 1 0.5139 4.7507 5.8246 42 1 0.6496 2.9834 4.1210 43 1 1.5611 -0.3873 -2.0628 44 1 3.0797 -0.6612 -1.1756 45 1 -0.2818 -2.3376 -1.9790 46 1 -0.1417 -4.9379 -1.2619 47 1 2.1129 -5.2561 0.0350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058288988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = 49.435128 kcal Electronic energy + Delta-G solvation = -29771.823271 eV Core-core repulsion = 25694.254365 eV Total energy + Delta-G solvation = -4077.568906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.67618 -41.02260 -39.00386 -36.70052 -36.65671 -33.64327 -33.10487 -31.97009 -31.00574 -29.74221 -29.35657 -27.93567 -27.16836 -26.56250 -23.92522 -22.98278 -22.38547 -21.85116 -21.28141 -20.47762 -20.39459 -18.55283 -17.47109 -16.95679 -16.70309 -16.27752 -16.11106 -15.63232 -15.29647 -15.22086 -15.04234 -14.58824 -14.45687 -14.11489 -13.83694 -13.69992 -13.32541 -13.25095 -13.06682 -12.98177 -12.85471 -12.74745 -12.47484 -12.06862 -11.81991 -11.75175 -11.59388 -11.48479 -11.42895 -11.20536 -10.97216 -10.89818 -10.60039 -10.28483 -10.03898 -9.79329 -9.20641 -9.03760 -8.82472 -8.72607 -8.33322 -7.77302 -7.16771 -6.43288 -4.53986 1.33224 1.56869 1.95697 2.35000 2.44018 2.86076 3.09317 3.18476 3.23121 3.51428 3.66812 3.82230 4.15557 4.42284 4.52652 4.56663 4.85072 4.87127 4.90502 5.04128 5.11614 5.14222 5.24174 5.30111 5.34159 5.45987 5.52495 5.53654 5.58308 5.65091 5.69666 5.74704 5.94368 5.97070 6.06078 6.10717 6.14847 6.32433 6.34002 6.48722 6.55194 6.75159 6.84348 6.86526 6.92441 7.03738 7.04739 7.17559 7.32475 7.48295 7.65411 7.75903 7.81268 8.23906 8.53791 9.15276 10.63101 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.010652 B = 0.002469 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.909635 B =11335.793358 C =13147.495117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.524 5.524 3 C 0.009 3.991 4 C 0.432 3.568 5 O -0.469 6.469 6 C -0.312 4.312 7 C 0.153 3.847 8 N -0.423 5.423 9 C 0.226 3.774 10 C -0.546 4.546 11 H 0.068 0.932 12 C 0.068 3.932 13 N -0.888 5.888 14 Si 0.905 3.095 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.084 3.916 19 C -0.101 4.101 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.083 4.083 23 C -0.057 4.057 24 C 0.128 3.872 25 C 0.008 3.992 26 C -0.210 4.210 27 C -0.216 4.216 28 C -0.042 4.042 29 O -0.168 6.168 30 H 0.022 0.978 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.173 0.827 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.269 0.731 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.926 -15.444 -2.497 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.248 5.248 3 C -0.119 4.119 4 C 0.314 3.686 5 O -0.348 6.348 6 C -0.321 4.321 7 C 0.011 3.989 8 N -0.096 5.096 9 C 0.108 3.892 10 C -0.584 4.584 11 H 0.086 0.914 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.732 3.268 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.021 4.021 19 C -0.120 4.120 20 C -0.141 4.141 21 C -0.162 4.162 22 C -0.101 4.101 23 C -0.060 4.060 24 C 0.000 4.000 25 C -0.043 4.043 26 C -0.230 4.230 27 C -0.235 4.235 28 C -0.110 4.110 29 O -0.063 6.063 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.190 0.810 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.163 0.837 46 H 0.164 0.836 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.567 -15.418 -1.733 17.723 hybrid contribution 0.716 0.465 -0.797 1.168 sum -7.851 -14.953 -2.530 17.077 Atomic orbital electron populations 1.22657 0.86379 1.02625 1.01730 1.61688 1.09095 1.12667 1.41345 1.22534 1.02266 0.88671 0.98405 1.19695 0.76895 0.85247 0.86811 1.90455 1.33029 1.65774 1.45509 1.19575 1.17438 0.97244 0.97819 1.22529 0.93985 0.84619 0.97729 1.44600 1.39852 1.12654 1.12533 1.19953 0.91933 0.82868 0.94415 1.21333 0.93174 1.14390 1.29500 0.91418 1.24939 0.99637 0.94616 0.94403 1.69919 1.36207 1.15197 1.31209 0.86306 0.83252 0.78444 0.78814 1.19381 1.20527 1.20528 1.18324 0.99900 0.96167 0.87698 1.20198 1.01004 0.98359 0.92483 1.20703 0.99595 0.97252 0.96581 1.20860 1.02399 0.93755 0.99181 1.20492 0.98534 0.99167 0.91919 1.18830 1.00411 0.92432 0.94370 1.20524 1.01809 0.84785 0.92837 1.22198 0.92224 0.91322 0.98574 1.21583 0.99567 0.94601 1.07289 1.21795 0.99629 0.97319 1.04796 1.24023 0.94365 0.88281 1.04314 1.84049 1.44478 1.17314 1.60431 0.95980 0.91202 0.89164 0.91546 0.87530 0.80953 0.92938 0.93148 0.92117 0.85792 0.86267 0.86570 0.85801 0.91437 0.88750 0.83750 0.83639 0.78278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.97 60.07 0.54 0.71 16 2 N -0.52 -6.63 4.49 -245.82 -1.10 -7.74 16 3 C 0.01 0.11 4.73 -4.98 -0.02 0.09 16 4 C 0.43 6.98 6.68 -32.98 -0.22 6.76 16 5 O -0.47 -8.76 13.95 5.45 0.08 -8.69 16 6 C -0.31 -5.47 6.11 -104.88 -0.64 -6.11 16 7 C 0.15 2.60 10.71 -16.45 -0.18 2.42 16 8 N -0.42 -8.44 2.70 -115.28 -0.31 -8.75 16 9 C 0.23 5.06 5.68 -5.19 -0.03 5.03 16 10 C -0.55 -13.64 9.39 -34.44 -0.32 -13.97 16 11 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -23.35 13.29 55.43 0.74 -22.62 16 14 Si 0.91 19.88 29.54 -169.99 -5.02 14.86 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.08 1.68 6.78 -83.95 -0.57 1.11 16 19 C -0.10 -1.87 9.96 -39.42 -0.39 -2.26 16 20 C -0.12 -1.95 10.01 -39.57 -0.40 -2.35 16 21 C -0.14 -2.25 10.03 -39.56 -0.40 -2.65 16 22 C -0.08 -1.46 9.80 -39.38 -0.39 -1.85 16 23 C -0.06 -1.10 6.24 -104.93 -0.65 -1.75 16 24 C 0.13 1.31 5.50 -4.97 -0.03 1.28 16 25 C 0.01 0.09 6.23 -35.63 -0.22 -0.13 16 26 C -0.21 -2.16 9.30 -39.70 -0.37 -2.53 16 27 C -0.22 -2.03 10.91 -39.70 -0.43 -2.46 16 28 C -0.04 -0.39 12.09 29.42 0.36 -0.04 16 29 O -0.17 -2.05 10.65 5.69 0.06 -1.99 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.82 6.09 -51.93 -0.32 0.51 16 32 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16 33 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.11 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.17 2.26 7.91 -52.48 -0.42 1.84 16 36 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.12 2.14 7.38 -52.49 -0.39 1.76 16 43 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 44 H 0.09 0.89 7.93 -51.93 -0.41 0.47 16 45 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 46 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 47 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 398.73 15.07 6.01 6.01 Total: -1.00 -30.50 398.73 -10.46 -40.95 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.44 Total: 5.01 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -4.46 Total: -17.05 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.68 Total: -39.11 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.14 Total: -10.68 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.50 -10.46 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058288988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.390 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds