Wall clock time and date at job start Tue Mar 31 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 N 1.46506 * 109.46809 * 180.02562 * 9 8 6 11 11 C 1.34775 * 120.00148 * 180.02562 * 10 9 8 12 12 O 1.21517 * 119.99590 * 359.97438 * 11 10 9 13 13 O 1.34630 * 120.00191 * 179.97438 * 11 10 9 14 14 C 1.45206 * 117.00065 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46897 * 59.99988 * 14 13 11 16 16 C 1.52998 * 109.47150 * 179.97438 * 14 13 11 17 17 C 1.53002 * 109.47235 * 300.00104 * 14 13 11 18 18 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 19 19 C 1.46491 * 126.04623 * 179.87688 * 18 4 3 20 20 C 1.50702 * 109.46957 * 269.71277 * 19 18 4 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48504 * 109.47196 * 60.00645 * 24 22 20 26 26 H 1.48504 * 109.46887 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47679 * 300.00280 * 24 22 20 28 28 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 30 30 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 31 31 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 32 32 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 33 33 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 34 34 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 35 35 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 36 36 H 1.09005 * 109.47406 * 299.99990 * 9 8 6 37 37 H 1.08990 * 109.47361 * 60.00544 * 9 8 6 38 38 H 0.97004 * 120.00050 * 359.97438 * 10 9 8 39 39 H 1.09001 * 109.46815 * 60.00068 * 15 14 13 40 40 H 1.09001 * 109.47143 * 179.97438 * 15 14 13 41 41 H 1.08993 * 109.47062 * 300.00194 * 15 14 13 42 42 H 1.09000 * 109.46978 * 60.00297 * 16 14 13 43 43 H 1.09000 * 109.47350 * 179.97438 * 16 14 13 44 44 H 1.09001 * 109.47480 * 300.00495 * 16 14 13 45 45 H 1.09005 * 109.46793 * 59.99928 * 17 14 13 46 46 H 1.08994 * 109.46998 * 179.97438 * 17 14 13 47 47 H 1.09000 * 109.47122 * 299.99843 * 17 14 13 48 48 H 1.09004 * 109.47166 * 149.71543 * 19 18 4 49 49 H 1.08994 * 109.47507 * 29.71250 * 19 18 4 50 50 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 7 6.5975 6.0742 0.0384 11 6 6.4619 7.4151 0.0437 12 8 5.3537 7.9137 0.0417 13 8 7.5542 8.2021 0.0513 14 6 7.3327 9.6372 0.0561 15 6 6.5370 10.0262 1.3037 16 6 8.6805 10.3612 0.0651 17 6 6.5472 10.0362 -1.1948 18 7 3.6093 -0.6405 0.0013 19 6 4.7870 -1.5116 0.0026 20 6 5.1921 -1.8109 -1.4178 21 1 4.6288 -1.3935 -2.2393 22 6 6.2856 -2.6124 -1.6685 23 7 6.9718 -3.1203 -0.6681 24 14 6.7923 -2.9770 -3.4290 25 1 7.1127 -1.7052 -4.1255 26 1 7.9891 -3.8562 -3.4277 27 1 5.6777 -3.6601 -4.1337 28 7 2.2731 -1.0608 0.0005 29 1 -0.3634 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5136 32 1 1.9901 2.1596 -0.0009 33 1 5.6359 1.1294 0.0155 34 1 6.4297 3.5415 0.9182 35 1 6.4372 3.5481 -0.8617 36 1 4.8172 5.4259 -0.8609 37 1 4.8102 5.4187 0.9191 38 1 7.4821 5.6761 0.0404 39 1 7.0967 9.7419 2.1948 40 1 6.3711 11.1035 1.3076 41 1 5.5769 9.5104 1.2977 42 1 9.2477 10.0841 -0.8235 43 1 8.5143 11.4384 0.0683 44 1 9.2398 10.0769 0.9564 45 1 5.5869 9.5203 -1.2007 46 1 6.3806 11.1133 -1.1909 47 1 7.1140 9.7591 -2.0836 48 1 4.5494 -2.4431 0.5166 49 1 5.6079 -1.0120 0.5169 50 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058295556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:50 Heat of formation + Delta-G solvation = -49.959517 kcal Electronic energy + Delta-G solvation = -30697.727614 eV Core-core repulsion = 26340.832464 eV Total energy + Delta-G solvation = -4356.895150 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 352.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04319 -40.86836 -39.37534 -37.73367 -35.41550 -34.78888 -34.28693 -33.80082 -32.11590 -31.26473 -29.14771 -28.17468 -27.74572 -27.68434 -26.07485 -24.89155 -22.92560 -22.28281 -21.30044 -20.37505 -19.76198 -19.29106 -18.36781 -17.13415 -16.94792 -16.67161 -16.61071 -16.40181 -15.86322 -15.24034 -14.89383 -14.80057 -14.75856 -14.45154 -14.25767 -13.88029 -13.68393 -13.66697 -12.89356 -12.83370 -12.79544 -12.58409 -12.52460 -12.30854 -12.22249 -12.15228 -12.12601 -11.95422 -11.79142 -11.62383 -11.60047 -11.57717 -11.12968 -10.90888 -10.65418 -10.44513 -10.37149 -10.30957 -9.98020 -9.86395 -9.55694 -9.44158 -8.75586 -7.95121 -7.47739 -6.37159 -4.45786 1.83600 2.17665 2.62514 2.78492 3.05936 3.14970 3.20161 3.24742 3.56915 3.70612 3.92121 4.21076 4.36913 4.38452 4.42857 4.57170 4.68325 4.77103 4.96141 5.12968 5.15188 5.20786 5.24440 5.34573 5.35629 5.43897 5.53661 5.58204 5.62443 5.65008 5.69171 5.90222 5.98215 6.02095 6.11412 6.14523 6.15690 6.23215 6.26825 6.39052 6.63565 6.79730 7.00812 7.14142 7.47537 7.54091 7.58411 7.75825 7.85610 8.14490 8.22845 8.58441 8.67563 9.21876 10.69851 Molecular weight = 352.19amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.002063 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.546693 B =13571.533494 C =15519.658506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.294 4.294 4 C 0.299 3.701 5 N -0.638 5.638 6 C 0.525 3.475 7 O -0.511 6.511 8 C -0.151 4.151 9 C 0.153 3.847 10 N -0.712 5.712 11 C 0.650 3.350 12 O -0.563 6.563 13 O -0.366 6.366 14 C 0.136 3.864 15 C -0.184 4.184 16 C -0.141 4.141 17 C -0.184 4.184 18 N -0.344 5.344 19 C 0.257 3.743 20 C -0.541 4.541 21 H 0.064 0.936 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 N -0.285 5.285 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.162 0.838 33 H 0.417 0.583 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.406 0.594 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.044 0.956 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 23.084 3.049 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.326 4.326 4 C 0.077 3.923 5 N -0.285 5.285 6 C 0.310 3.690 7 O -0.385 6.385 8 C -0.191 4.191 9 C 0.030 3.970 10 N -0.372 5.372 11 C 0.403 3.597 12 O -0.452 6.452 13 O -0.281 6.281 14 C 0.100 3.900 15 C -0.241 4.241 16 C -0.198 4.198 17 C -0.242 4.242 18 N -0.130 5.130 19 C 0.139 3.861 20 C -0.579 4.579 21 H 0.082 0.918 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.734 3.266 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.199 1.199 28 N -0.110 5.110 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.254 0.746 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.241 0.759 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.961 22.325 3.101 22.733 hybrid contribution 1.513 0.020 -0.962 1.794 sum 4.475 22.344 2.139 22.888 Atomic orbital electron populations 1.20021 0.87570 1.02471 1.02057 1.22042 0.96540 0.91043 1.01820 1.21284 0.89060 1.00483 1.21750 1.17922 0.87986 0.83365 1.03036 1.42745 1.08386 1.05530 1.71846 1.20153 0.90947 0.81398 0.76463 1.90688 1.26732 1.73646 1.47462 1.21751 0.97203 0.93947 1.06209 1.21021 0.85329 0.85844 1.04788 1.44673 1.11109 1.02821 1.78608 1.18010 0.82874 0.82525 0.76283 1.90932 1.25470 1.73744 1.55060 1.86293 1.34951 1.20088 1.86764 1.22076 0.96690 0.74650 0.96616 1.22524 1.02568 1.02686 0.96361 1.21864 0.94788 0.99744 1.03404 1.22525 1.02629 1.02654 0.96351 1.49354 1.06549 1.02168 1.54881 1.19615 0.77807 0.89781 0.98907 1.21299 1.13116 1.32183 0.91327 0.91755 1.24939 0.95705 0.94866 0.98190 1.69908 1.19069 1.32673 1.31102 0.86405 0.78111 0.78512 0.83618 1.19983 1.20901 1.19859 1.77365 0.86128 1.21808 1.25710 0.91361 0.91105 0.91504 0.82083 0.74600 0.87412 0.87267 0.89853 0.89872 0.75891 0.92160 0.91130 0.89272 0.91450 0.90127 0.91450 0.89272 0.91126 0.92136 0.92554 0.93821 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.00 7.21 -82.44 -0.59 0.41 16 3 C -0.29 -5.91 9.58 -39.78 -0.38 -6.29 16 4 C 0.30 6.11 7.66 -153.16 -1.17 4.94 16 5 N -0.64 -10.26 5.41 -11.46 -0.06 -10.33 16 6 C 0.52 7.31 7.79 -10.98 -0.09 7.22 16 7 O -0.51 -8.67 13.11 5.55 0.07 -8.59 16 8 C -0.15 -1.31 5.81 -27.88 -0.16 -1.47 16 9 C 0.15 1.53 4.96 -4.04 -0.02 1.51 16 10 N -0.71 -6.35 5.56 -65.28 -0.36 -6.71 16 11 C 0.65 7.36 8.06 54.05 0.44 7.80 16 12 O -0.56 -7.82 11.88 -19.29 -0.23 -8.05 16 13 O -0.37 -3.69 9.94 -40.30 -0.40 -4.09 16 14 C 0.14 1.15 1.13 -90.62 -0.10 1.05 16 15 C -0.18 -1.53 8.37 37.16 0.31 -1.22 16 16 C -0.14 -0.82 8.85 37.16 0.33 -0.49 16 17 C -0.18 -1.56 8.37 37.16 0.31 -1.24 16 18 N -0.34 -7.90 3.60 -61.58 -0.22 -8.13 16 19 C 0.26 6.26 6.01 -5.20 -0.03 6.23 16 20 C -0.54 -14.22 9.39 -34.44 -0.32 -14.54 16 21 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 22 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -23.83 13.29 55.43 0.74 -23.09 16 24 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 N -0.28 -6.57 12.56 33.65 0.42 -6.15 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.16 3.15 5.83 -52.49 -0.31 2.84 16 33 H 0.42 6.05 7.96 -40.82 -0.32 5.72 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.52 16 38 H 0.41 2.53 8.58 -40.82 -0.35 2.18 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.04 1.02 7.49 -51.93 -0.39 0.63 16 50 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 415.11 15.07 6.26 6.26 Total: -1.00 -33.22 415.11 -7.88 -41.10 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.86 Total: 7.52 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.21 Total: 4.99 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.51 Total: -54.40 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.56 Total: -20.74 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.22 -7.88 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058295556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.858 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds