Wall clock time and date at job start Tue Mar 31 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39764 * 125.83553 * 2 1 4 4 C 1.36112 * 107.82312 * 180.14383 * 3 2 1 5 5 N 1.39468 * 126.21140 * 179.84921 * 4 3 2 6 6 C 1.34777 * 120.00408 * 359.68332 * 5 4 3 7 7 O 1.21286 * 119.99822 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.36827 * 125.06336 * 269.69551 * 9 8 6 11 11 C 1.50699 * 125.03364 * 0.02562 * 10 9 8 12 12 C 1.34235 * 109.92602 * 179.85170 * 10 9 8 13 13 C 1.46483 * 107.00053 * 0.40112 * 12 10 9 14 14 C 1.39629 * 134.03183 * 179.75947 * 13 12 10 15 15 C 1.36629 * 119.76649 * 179.97438 * 14 13 12 16 16 C 1.38828 * 120.52255 * 359.97438 * 15 14 13 17 17 C 1.37743 * 120.67192 * 0.02562 * 16 15 14 18 18 C 1.37690 * 125.05951 * 90.00217 * 9 8 6 19 19 N 1.35259 * 107.56737 * 359.58324 * 4 3 2 20 20 C 1.46505 * 126.04254 * 180.23022 * 19 4 3 21 21 C 1.50700 * 109.47077 * 90.00111 * 20 19 4 22 22 H 1.08001 * 120.00459 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99823 * 179.97438 * 21 20 19 24 24 N 1.31519 * 119.99751 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00247 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46788 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47368 * 119.99753 * 25 23 21 28 28 H 1.48507 * 109.47159 * 240.00081 * 25 23 21 29 29 N 1.30848 * 125.84086 * 179.67156 * 2 1 3 30 30 H 1.08993 * 109.47227 * 270.30160 * 1 2 3 31 31 H 1.09006 * 109.46750 * 30.30410 * 1 2 3 32 32 H 1.08998 * 109.46723 * 150.29984 * 1 2 3 33 33 H 1.07997 * 126.08639 * 359.97438 * 3 2 1 34 34 H 0.97005 * 120.00129 * 179.69049 * 5 4 3 35 35 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 36 36 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 37 37 H 1.08993 * 109.47458 * 90.00105 * 11 10 9 38 38 H 1.09004 * 109.46681 * 210.00344 * 11 10 9 39 39 H 1.09005 * 109.47305 * 329.99457 * 11 10 9 40 40 H 1.08004 * 126.50165 * 180.15168 * 12 10 9 41 41 H 1.08004 * 120.11836 * 359.97438 * 14 13 12 42 42 H 1.07996 * 119.73353 * 180.02562 * 15 14 13 43 43 H 1.08006 * 119.66437 * 179.97438 * 16 15 14 44 44 H 1.08003 * 120.11184 * 180.02562 * 17 16 15 45 45 H 1.09002 * 109.46833 * 209.99790 * 20 19 4 46 46 H 1.08998 * 109.46919 * 329.99636 * 20 19 4 47 47 H 0.97004 * 119.99868 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6197 0.7122 -0.0033 5 7 4.7512 1.5275 -0.0073 6 6 4.6157 2.8685 -0.0148 7 8 3.5096 3.3661 -0.0175 8 6 5.8384 3.7494 -0.0197 9 7 5.4271 5.1556 -0.0269 10 6 5.2118 5.9058 -1.1507 11 6 5.3620 5.4080 -2.5652 12 6 4.8432 7.1499 -0.8065 13 6 4.8300 7.2031 0.6573 14 6 4.5399 8.2013 1.5895 15 6 4.6219 7.9264 2.9253 16 6 4.9910 6.6619 3.3636 17 6 5.2815 5.6625 2.4613 18 6 5.2054 5.9205 1.0963 19 7 3.6092 -0.6403 0.0042 20 6 4.7871 -1.5115 0.0086 21 6 5.1914 -1.8024 1.4309 22 1 4.6276 -1.3803 2.2497 23 6 6.2810 -2.6075 1.6870 24 7 6.9672 -3.1220 0.6899 25 14 6.7826 -2.9676 3.4499 26 1 5.8552 -2.2743 4.3798 27 1 6.7243 -4.4316 3.6920 28 1 8.1673 -2.4827 3.6795 29 7 2.2732 -1.0607 0.0061 30 1 -0.3633 0.0054 1.0276 31 1 -0.3633 0.8873 -0.5186 32 1 -0.3633 -0.8927 -0.5092 33 1 1.9902 2.1597 -0.0004 34 1 5.6359 1.1296 -0.0049 35 1 6.4335 3.5400 -0.9086 36 1 6.4336 3.5498 0.8713 37 1 4.4119 4.9999 -2.9096 38 1 5.6583 6.2343 -3.2115 39 1 6.1248 4.6300 -2.5975 40 1 4.6057 7.9593 -1.4810 41 1 4.2517 9.1873 1.2558 42 1 4.3970 8.6987 3.6459 43 1 5.0518 6.4599 4.4229 44 1 5.5674 4.6819 2.8122 45 1 4.5498 -2.4459 -0.5000 46 1 5.6083 -1.0148 -0.5082 47 1 7.7340 -3.6881 0.8700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058328344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:38 Heat of formation + Delta-G solvation = 105.467302 kcal Electronic energy + Delta-G solvation = -30469.805919 eV Core-core repulsion = 26426.959502 eV Total energy + Delta-G solvation = -4042.846417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.64532 -40.84347 -39.18410 -37.19202 -34.85510 -33.84290 -33.24076 -32.13936 -31.38115 -30.49543 -29.25809 -28.55311 -27.16535 -26.40901 -26.07751 -23.04340 -22.34419 -21.61442 -21.56985 -20.05453 -19.72260 -19.30815 -17.32796 -17.15644 -16.85409 -16.51485 -16.37490 -15.49256 -15.24420 -15.15512 -14.74806 -14.44438 -14.20128 -14.06143 -13.85918 -13.75562 -13.21370 -13.08705 -12.92304 -12.85956 -12.79181 -12.56791 -12.51422 -12.26465 -12.03841 -11.84583 -11.64696 -11.57171 -11.41338 -11.12307 -10.96972 -10.88213 -10.49227 -10.41043 -10.09415 -9.85757 -9.70469 -9.55334 -8.79339 -8.12881 -7.99595 -7.67659 -7.53167 -6.40438 -4.49138 1.09361 1.58244 2.07710 2.28454 2.65114 2.87904 3.00522 3.09896 3.19444 3.25186 3.51310 3.69604 3.91940 4.18427 4.40319 4.45072 4.51771 4.60074 4.75162 4.93050 4.97391 5.03131 5.12767 5.30115 5.35892 5.38997 5.42377 5.51170 5.56919 5.69078 5.78837 5.92191 5.99952 6.04153 6.08585 6.09740 6.17984 6.33038 6.43630 6.57432 6.58179 6.72587 6.75314 6.78952 6.96795 7.13426 7.18921 7.41312 7.48981 7.54390 7.72214 7.80107 8.14551 8.54726 8.63810 9.19002 10.66637 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.003016 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.386316 B = 9280.086055 C =10351.763751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.293 4.293 4 C 0.300 3.700 5 N -0.637 5.637 6 C 0.497 3.503 7 O -0.493 6.493 8 C 0.094 3.906 9 N -0.464 5.464 10 C 0.093 3.907 11 C -0.096 4.096 12 C -0.206 4.206 13 C -0.102 4.102 14 C -0.075 4.075 15 C -0.148 4.148 16 C -0.103 4.103 17 C -0.124 4.124 18 C 0.108 3.892 19 N -0.343 5.343 20 C 0.256 3.744 21 C -0.541 4.541 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.889 5.889 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.280 1.280 29 N -0.283 5.283 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.160 0.840 34 H 0.417 0.583 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 19.445 -3.039 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.325 4.325 4 C 0.078 3.922 5 N -0.285 5.285 6 C 0.281 3.719 7 O -0.365 6.365 8 C -0.032 4.032 9 N -0.148 5.148 10 C -0.013 4.013 11 C -0.154 4.154 12 C -0.230 4.230 13 C -0.106 4.106 14 C -0.094 4.094 15 C -0.167 4.167 16 C -0.122 4.122 17 C -0.144 4.144 18 C 0.003 3.997 19 N -0.129 5.129 20 C 0.139 3.861 21 C -0.579 4.579 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.206 1.206 29 N -0.109 5.109 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.177 0.823 34 H 0.254 0.746 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.666 18.046 -3.127 18.327 hybrid contribution 1.018 0.002 1.045 1.459 sum 0.352 18.048 -2.082 18.171 Atomic orbital electron populations 1.20026 0.87537 1.02359 1.02215 1.22036 0.96553 0.90982 1.01767 1.21261 0.89096 1.00420 1.21703 1.17874 0.87829 0.83351 1.03164 1.42690 1.08492 1.05303 1.72001 1.20867 0.91813 0.81734 0.77505 1.90711 1.26114 1.73465 1.46174 1.21475 0.94928 0.79622 1.07177 1.43244 1.59324 1.07703 1.04486 1.20282 1.01599 0.91145 0.88256 1.20519 1.03051 1.02075 0.89717 1.21359 1.12165 0.96709 0.92794 1.19141 1.04823 0.93191 0.93494 1.20221 0.99218 0.97839 0.92112 1.20593 1.03649 0.97048 0.95409 1.20765 0.99759 0.92806 0.98862 1.20055 1.05103 0.99965 0.89313 1.18152 1.02589 0.90903 0.88012 1.49367 1.06578 1.02102 1.54821 1.19632 0.77759 0.89793 0.98954 1.21379 1.13297 1.31949 0.91321 0.91656 1.24939 0.95693 0.94805 0.98239 1.69926 1.19166 1.32499 1.31107 0.86307 0.78347 0.78539 0.83579 1.19541 1.20460 1.20599 1.77366 0.86103 1.21761 1.25653 0.91268 0.91147 0.91490 0.82290 0.74649 0.85883 0.85964 0.90138 0.89637 0.91460 0.83684 0.86260 0.86261 0.85908 0.86504 0.92501 0.93855 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.03 7.21 -82.44 -0.59 0.44 16 3 C -0.29 -5.98 9.58 -39.78 -0.38 -6.36 16 4 C 0.30 6.16 7.66 -153.16 -1.17 4.99 16 5 N -0.64 -10.40 5.41 -11.46 -0.06 -10.46 16 6 C 0.50 7.40 7.86 -10.98 -0.09 7.31 16 7 O -0.49 -9.03 13.56 5.55 0.08 -8.95 16 8 C 0.09 1.01 6.26 -5.19 -0.03 0.98 16 9 N -0.46 -5.83 2.27 -111.13 -0.25 -6.08 16 10 C 0.09 1.08 6.83 -81.77 -0.56 0.52 16 11 C -0.10 -0.81 10.03 36.01 0.36 -0.45 16 12 C -0.21 -2.45 10.95 -37.67 -0.41 -2.86 16 13 C -0.10 -1.36 6.37 -105.14 -0.67 -2.03 16 14 C -0.08 -0.87 10.05 -39.64 -0.40 -1.27 16 15 C -0.15 -1.60 9.97 -39.94 -0.40 -2.00 16 16 C -0.10 -1.17 10.01 -39.54 -0.40 -1.57 16 17 C -0.12 -1.60 9.97 -39.43 -0.39 -1.99 16 18 C 0.11 1.49 6.81 -83.99 -0.57 0.92 16 19 N -0.34 -7.87 3.60 -61.57 -0.22 -8.10 16 20 C 0.26 6.23 6.01 -5.19 -0.03 6.19 16 21 C -0.54 -14.21 9.39 -34.44 -0.32 -14.53 16 22 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 23 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -23.73 13.29 55.43 0.74 -22.99 16 25 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 29 N -0.28 -6.55 12.56 33.65 0.42 -6.12 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.16 3.23 5.83 -52.49 -0.31 2.92 16 34 H 0.42 6.05 7.97 -40.82 -0.33 5.72 16 35 H 0.12 0.93 6.87 -51.93 -0.36 0.57 16 36 H 0.12 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.48 6.91 -51.93 -0.36 0.12 16 40 H 0.15 1.37 8.06 -52.48 -0.42 0.94 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 44 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 45 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 47 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -33.57 400.86 -10.42 -43.99 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.35 Total: 8.04 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -5.78 Total: -10.61 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.62 Total: -53.75 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.57 -10.42 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058328344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.453 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds