Wall clock time and date at job start Tue Mar 31 2020 05:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38234 * 120.00116 * 2 1 4 4 C 1.38235 * 119.99989 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00047 * 0.02562 * 4 3 2 6 6 S 1.76189 * 120.00011 * 179.97438 * 5 4 3 7 7 O 1.42106 * 106.40374 * 336.45848 * 6 5 4 8 8 O 1.42101 * 106.40496 * 203.53882 * 6 5 4 9 9 N 1.65600 * 107.22131 * 89.99785 * 6 5 4 10 10 C 1.46507 * 119.99580 * 65.00174 * 9 6 5 11 11 C 1.53002 * 109.46726 * 165.00166 * 10 9 6 12 12 H 1.08999 * 109.50322 * 55.07888 * 11 10 9 13 13 C 1.53118 * 109.50501 * 294.99795 * 11 10 9 14 14 C 1.53115 * 109.16177 * 182.40825 * 13 11 10 15 15 C 1.53039 * 109.27819 * 57.65187 * 14 13 11 16 16 N 1.46840 * 109.52528 * 300.81928 * 15 14 13 17 17 C 1.46895 * 111.00229 * 185.83875 * 16 15 14 18 18 C 1.50706 * 109.47182 * 66.04782 * 17 16 15 19 19 H 1.08005 * 119.99758 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00102 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 C 1.46848 * 111.19623 * 61.74209 * 16 15 14 27 27 C 1.38241 * 119.99702 * 0.25302 * 5 4 3 28 28 C 1.38233 * 120.00294 * 359.49187 * 27 5 4 29 29 H 1.09007 * 109.46845 * 89.99932 * 1 2 3 30 30 H 1.08999 * 109.47160 * 210.00179 * 1 2 3 31 31 H 1.08996 * 109.46856 * 330.00572 * 1 2 3 32 32 H 1.08004 * 119.99890 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99889 * 179.97438 * 4 3 2 34 34 H 0.97000 * 120.00432 * 245.00231 * 9 6 5 35 35 H 1.08993 * 109.47527 * 45.00050 * 10 9 6 36 36 H 1.09000 * 109.46674 * 284.99477 * 10 9 6 37 37 H 1.08992 * 109.52592 * 62.49933 * 13 11 10 38 38 H 1.09005 * 109.57440 * 302.34166 * 13 11 10 39 39 H 1.08995 * 109.50368 * 297.71167 * 14 13 11 40 40 H 1.08999 * 109.53573 * 177.61444 * 14 13 11 41 41 H 1.09009 * 109.45752 * 180.80365 * 15 14 13 42 42 H 1.08998 * 109.46500 * 60.83961 * 15 14 13 43 43 H 1.09001 * 109.47613 * 306.05128 * 17 16 15 44 44 H 1.09006 * 109.47521 * 186.04746 * 17 16 15 45 45 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 46 46 H 1.08998 * 109.46004 * 58.27805 * 26 16 15 47 47 H 1.09000 * 109.46139 * 178.23846 * 26 16 15 48 48 H 1.08002 * 119.99411 * 179.73097 * 27 5 4 49 49 H 1.07999 * 120.00521 * 180.23038 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 -0.0001 -0.0016 6 16 6.0337 -0.0001 -0.0030 7 8 6.4346 1.2499 -0.5472 8 8 6.4345 -1.2496 -0.5482 9 7 6.5252 -0.0007 1.5784 10 6 6.2305 -1.1511 2.4365 11 6 7.0903 -1.0782 3.7000 12 1 6.9329 -0.1187 4.1925 13 6 8.5672 -1.2228 3.3224 14 6 9.4155 -1.2093 4.5970 15 6 8.9563 -2.3390 5.5216 16 7 7.5379 -2.1550 5.8542 17 6 7.0983 -3.1419 6.8496 18 6 7.8082 -2.8896 8.1547 19 1 8.5150 -2.0770 8.2367 20 6 7.5555 -3.6960 9.2441 21 7 6.6952 -4.6857 9.1442 22 14 8.4361 -3.3836 10.8616 23 1 7.9916 -4.3811 11.8679 24 1 9.9022 -3.5041 10.6585 25 1 8.1140 -2.0168 11.3447 26 6 6.6986 -2.2117 4.6506 27 6 3.5805 -1.1972 -0.0074 28 6 2.1982 -1.1972 -0.0016 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6582 2.1325 -0.0004 33 1 4.1206 2.1324 -0.0010 34 1 7.0081 0.7604 1.9366 35 1 6.4529 -2.0724 1.8983 36 1 5.1763 -1.1373 2.7132 37 1 8.8618 -0.3932 2.6799 38 1 8.7186 -2.1642 2.7941 39 1 9.2948 -0.2521 5.1042 40 1 10.4643 -1.3543 4.3383 41 1 9.5489 -2.3231 6.4364 42 1 9.0901 -3.2969 5.0189 43 1 7.3347 -4.1453 6.4955 44 1 6.0221 -3.0533 6.9984 45 1 6.2383 -4.8481 8.3041 46 1 6.8430 -3.1702 4.1520 47 1 5.6513 -2.1035 4.9328 48 1 4.1205 -2.1325 -0.0127 49 1 1.6581 -2.1325 -0.0024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058330604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:36 Heat of formation + Delta-G solvation = -66.054657 kcal Electronic energy + Delta-G solvation = -28958.709927 eV Core-core repulsion = 25011.576959 eV Total energy + Delta-G solvation = -3947.132968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.72091 -38.88308 -37.44849 -36.07272 -35.79536 -33.54291 -33.42786 -31.76900 -31.46169 -30.79179 -27.73027 -26.61124 -25.49987 -23.46765 -23.27719 -22.34885 -22.15751 -20.95899 -19.90744 -19.30071 -18.29056 -17.57491 -16.70720 -16.51596 -15.90401 -15.72822 -15.20645 -15.07967 -14.71534 -14.52174 -14.30611 -14.17038 -13.96362 -13.76948 -13.71051 -13.57502 -12.83990 -12.78965 -12.69863 -12.57487 -12.52490 -12.34021 -12.29017 -12.22782 -11.87947 -11.59318 -11.57594 -11.20764 -11.10108 -10.87354 -10.80290 -10.67118 -10.41876 -10.11645 -10.10090 -9.85451 -9.64548 -9.50650 -9.44357 -8.67641 -8.38948 -7.34919 -6.38246 -4.07140 0.11559 0.45067 0.90338 2.71940 3.11087 3.43577 3.45700 3.53840 3.64219 4.04205 4.31662 4.34991 4.48355 4.49457 4.59838 4.79717 4.87514 4.88920 4.89569 5.07059 5.10408 5.16756 5.21140 5.27530 5.37392 5.43898 5.50410 5.53031 5.55364 5.58625 5.68573 5.75158 5.77650 5.87250 5.93847 6.02329 6.10731 6.13784 6.21894 6.28046 6.41929 6.43615 6.66671 6.68220 6.74038 6.99090 7.08694 7.78575 7.97965 8.31023 8.57055 8.85610 9.63523 11.00894 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.002320 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.467676 B =12067.849630 C =13524.926986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 C -0.144 4.144 4 C -0.014 4.014 5 C -0.683 4.683 6 S 2.697 3.303 7 O -0.962 6.962 8 O -0.956 6.956 9 N -1.112 6.112 10 C 0.121 3.879 11 C -0.088 4.088 12 H 0.086 0.914 13 C -0.114 4.114 14 C -0.117 4.117 15 C 0.064 3.936 16 N -0.529 5.529 17 C 0.184 3.816 18 C -0.587 4.587 19 H 0.057 0.943 20 C 0.013 3.987 21 N -0.915 5.915 22 Si 1.072 2.928 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.061 3.939 27 C -0.016 4.016 28 C -0.142 4.142 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.420 0.580 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.018 0.982 43 H -0.020 1.020 44 H 0.020 0.980 45 H 0.266 0.734 46 H 0.024 0.976 47 H 0.068 0.932 48 H 0.141 0.859 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 11.011 -20.786 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.031 4.031 3 C -0.163 4.163 4 C -0.034 4.034 5 C -0.770 4.770 6 S 2.787 3.213 7 O -0.953 6.953 8 O -0.946 6.946 9 N -0.873 5.873 10 C -0.006 4.006 11 C -0.108 4.108 12 H 0.104 0.896 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.065 4.065 16 N -0.253 5.253 17 C 0.058 3.942 18 C -0.626 4.626 19 H 0.075 0.925 20 C -0.190 4.190 21 N -0.551 5.551 22 Si 0.900 3.100 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.214 1.214 26 C -0.069 4.069 27 C -0.035 4.035 28 C -0.161 4.161 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.036 0.964 43 H -0.002 1.002 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.159 0.841 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.289 10.753 -19.811 24.017 hybrid contribution -0.710 0.042 -1.481 1.643 sum -8.999 10.794 -21.292 25.512 Atomic orbital electron populations 1.20958 0.90525 1.03638 1.02989 1.20311 0.96574 0.93338 0.92877 1.21190 0.94183 0.98042 1.02876 1.20918 0.94723 0.96579 0.91148 1.30942 1.27227 0.99556 1.19236 1.01750 0.73604 0.73576 0.72414 1.93588 1.81514 1.43826 1.76335 1.93593 1.80541 1.44239 1.76254 1.55433 1.72225 1.28555 1.31074 1.21404 0.99509 0.87512 0.92156 1.21364 0.94785 1.01156 0.93486 0.89587 1.21628 0.94361 1.01552 0.97623 1.21628 0.98152 1.00278 0.95476 1.21961 0.90644 0.95012 0.98838 1.61905 1.01602 1.52824 1.09009 1.19807 0.95955 0.87815 0.90616 1.21963 1.27209 1.17411 0.96010 0.92470 1.25850 0.96799 0.93383 1.02974 1.70802 1.25707 1.29512 1.29095 0.83496 0.75459 0.75916 0.75121 1.20860 1.21473 1.21378 1.21978 0.98100 0.95390 0.91419 1.20977 0.94807 0.96666 0.91060 1.21213 0.94197 0.98107 1.02601 0.90331 0.90782 0.90866 0.85037 0.84216 0.74496 0.90193 0.91568 0.92239 0.92203 0.91409 0.92209 0.89761 0.96365 1.00243 0.96241 0.92352 0.95741 0.91322 0.84099 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.03 -0.23 5.88 -104.62 -0.62 -0.85 16 3 C -0.14 -1.13 9.70 -39.58 -0.38 -1.52 16 4 C -0.01 -0.13 9.52 -39.58 -0.38 -0.51 16 5 C -0.68 -6.73 5.95 -39.58 -0.24 -6.97 16 6 S 2.70 29.03 5.74 -107.50 -0.62 28.41 16 7 O -0.96 -12.38 17.28 -57.17 -0.99 -13.37 16 8 O -0.96 -12.89 16.75 -57.17 -0.96 -13.85 16 9 N -1.11 -10.50 5.56 -10.61 -0.06 -10.56 16 10 C 0.12 1.27 5.62 -4.04 -0.02 1.25 16 11 C -0.09 -1.14 2.38 -90.54 -0.22 -1.35 16 12 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.11 -1.48 5.14 -26.61 -0.14 -1.61 16 14 C -0.12 -1.74 6.09 -26.65 -0.16 -1.90 16 15 C 0.06 1.22 5.30 -3.84 -0.02 1.20 16 16 N -0.53 -11.06 4.65 -236.11 -1.10 -12.16 16 17 C 0.18 4.68 4.03 -4.98 -0.02 4.66 16 18 C -0.59 -16.44 8.43 -34.44 -0.29 -16.73 16 19 H 0.06 1.60 7.14 -52.48 -0.37 1.22 16 20 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 21 N -0.91 -27.67 13.65 55.43 0.76 -26.91 16 22 Si 1.07 25.09 29.90 -169.99 -5.08 20.01 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.06 1.02 4.74 -3.83 -0.02 1.00 16 27 C -0.02 -0.15 9.52 -39.58 -0.38 -0.53 16 28 C -0.14 -1.17 9.70 -39.58 -0.38 -1.55 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.14 1.07 7.62 -52.49 -0.40 0.67 16 34 H 0.42 3.36 8.38 -34.47 -0.29 3.07 16 35 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.66 7.61 -51.93 -0.40 0.26 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.78 6.72 -51.92 -0.35 1.43 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H -0.02 -0.54 7.99 -51.93 -0.41 -0.96 16 44 H 0.02 0.52 7.85 -51.93 -0.41 0.11 16 45 H 0.27 8.02 7.22 -40.82 -0.29 7.72 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 48 H 0.14 1.18 7.61 -52.49 -0.40 0.78 16 49 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -35.08 403.66 -12.96 -48.05 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.01 Total: -0.31 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -3.00 Total: -25.39 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.40 Total: -49.63 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.95 Total: -27.22 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Atomic # 16 Polarization: 29.03 SS G_CDS: -0.62 Total: 28.41 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.08 -12.96 -48.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058330604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.009 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds